TCONS_00054011 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054011
Unique NameTCONS_00054011
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length510

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054011 ID=TCONS_00054011|Name=TCONS_00054011|organism=Clytia hemisphaerica|type=transcript|length=510bp
AAATCGATCTGttcaagcagacaaggtttatatttttgccgTGTACCTCT
TTAGTGATCAAGCACTGTTGTTTACTCACACTGTTGGTGATCAATGCTTC
CTTAATCACCAGCACACTGAATGGCACTtttaggagaaaaaaaaaataaa
aaaaataaagaatattgcatccaaaaacttcaaaaatcctTAGGAAAAAG
ATCCCTGAAAGTCACTTTTAAAGCTGTCTGACTGTCTGAAAAATAACCAG
AGAGAAAGTTTCCAATTCAGTCGAGTTGACAACCATAACAGTCAAGAACA
TGCACCACATGGTGAGTTAAATTTCCTCAATAAAAATCGCACATTGATTA
ATCCTGACTAAAGGTTTTACACTATAGACAAGAGTTCCGCCTCGCTGCAC
AAATGCCTCGCTGCACAAATCGATCGGGAGAGGCGTGGGCGTTATTAAAg
gcgcaaaaagggcgtaagtagccaaggatcggagaaatgcctttttaact
aatatttccc
Run BLAST on NCBI

transcript from alignment at scaffold_237:507043..507552

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054011 ID=TCONS_00054011|Name=TCONS_00054011|organism=Clytia hemisphaerica|type=transcript|length=510bp|location=Sequence derived from alignment at scaffold_237:507043..507552 (Clytia hemisphaerica)
gggaaatattagttaaaaaggcatttctccgatccttggctacttacgcc
ctttttgcgccTTTAATAACGCCCACGCCTCTCCCGATCGATTTGTGCAG
CGAGGCATTTGTGCAGCGAGGCGGAACTCTTGTCTATAGTGTAAAACCTT
TAGTCAGGATTAATCAATGTGCGATTTTTATTGAGGAAATTTAACTCACC
ATGTGGTGCATGTTCTTGACTGTTATGGTTGTCAACTCGACTGAATTGGA
AACTTTCTCTCTGGTTATTTTTCAGACAGTCAGACAGCTTTAAAAGTGAC
TTTCAGGGATCTTTTTCCTAaggatttttgaagtttttggatgcaatatt
ctttattttttttattttttttttctcctaaaAGTGCCATTCAGTGTGCT
GGTGATTAAGGAAGCATTGATCACCAACAGTGTGAGTAAACAACAGTGCT
TGATCACTAAAGAGGTACAcggcaaaaatataaaccttgtctgcttgaaC
AGATCGATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034096XLOC_034096Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054011-exon-scaffold_237-1491911889:507043..507552TCONS_00054011-exon-scaffold_237-1491911889:507043..507552Clytia hemisphaericaexon
TCONS_00054011-exon-scaffold_237-1510915933:507043..507552TCONS_00054011-exon-scaffold_237-1510915933:507043..507552Clytia hemisphaericaexon
TCONS_00054011-exon-scaffold_237-1575043694:507043..507552TCONS_00054011-exon-scaffold_237-1575043694:507043..507552Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_237supercontigscaffold_237:507043..507552 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.06645	5.26033	2.45695	1.4531	29.5039	17.7291	13.2524	15.0171	9.16351	7.86689	7.71196	9.56728	11.3761	12.1268	7.21472	5.57482	7.64663	5.97685	9.71485	13.1398	18.8002	18.3846	8.09387	11.4243	9.30518	10.9852	38.1513	36.1513	30.1882	28.4463
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054011 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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