TCONS_00054191 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054191
Unique NameTCONS_00054191
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length4565

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054191 ID=TCONS_00054191|Name=TCONS_00054191|organism=Clytia hemisphaerica|type=transcript|length=4565bp
CGGATTAGAGAGGGCTGCACTGGGAAATATTGCCTGAGTAACACAGAACT
TAGTAAAACTATATATTTATTTATCTTAACAGACCTTCACTTggaatgga
aaaaaaaacattctcaaATATTACGTCAAGATTTAAACGATAAAATGACA
GTAGACGAAATTAAGCGCAATTTCATTCAGCAAAGGACCCACAACAAAAA
GTTTGGACGTTTATTTCTAAAGTTATATGTCCAAAATGAAAAGATCTCAT
CAATatcattcaaaaactgaaatCTGCAACCTGTACAATATGTCCAGAAT
GTCTACTTTAACAATATTGTTCAATCAAAAGACAATATTTATGAAGCTTT
GCAGTGCTTCTTATGCTCACTCCAATGTTTAGCTTGACATTCTTTTCCAC
AATAACTCACCGCACGACAACGTCCACACTTCTTAAATCGTTTCTGCGCA
CTCTCCGACATCGTCTGCTCTCCGCCTGACTTGCTACGCGGGCAGCTAGA
TAGTGCACaggttttgattttctttgtttttttctctttctctcgTTTTT
CGCCGTCGTCATCGTCGATCTCAACGATTTTCGGCGCCGGTTGTTTCTCC
GACTTCGGATTTTCTTTCGAATGACTTCTTTGGCAATCCGAATTCTTTGC
TTTCGGATTCGGTATAATTGAAATAATAGCTCTTGTTTTTGTTccgtttt
tgtttttcaacttAGTTATTCCAACCTCATTTTTGCATGCACTAAATGTC
TCAGCGATTTTCAAACTGGACTGTAAAGCTTCTACAAGCTTTTTATCACG
AGGACCTTTAACGGCTTGCTTATCCGATTTCTTCTTAGTATCGCCAAAAC
CGAGCTTTGCGTATTGCTTTTTGGTGATAGCATCTTTGAAATCACCTCCA
TCAgacaaataaaaacaattagcTTCATCTTGGTACATCTCATTAACGGT
GGAAACTAAAGAACGAGTGATATGCTTGGAGACATCAAGCTCGTCATGGT
GCATAATATGTGCCATGCAAGCAACAGCGATGGTGCTATATCGATCAGGC
ATAGATTTATCTGAGATTGTAGCGATCAAAACTTCCATCATCTTATCCGC
TACCGATTGAGGGATTTTCGACGTTTCTTTGTTGAGACCGTCCGCTTTTA
CGTAATCCAACATTTTCGTCCAGTTTTCGCCGTTGACGTAAACGCACATG
TTACGGAAGGTGTCGGGTTTCAAGGAGCGAAAGAGTTGCATTCGTTCGCC
GTTCAGCTCTTCAAGGACACCAGATGATTTCATGTGATACAAGATGCATA
AATCGTAGTGAATCAGCTTGACAGTGACGGGCATTAATTGCGAATACAAA
TTCTTATTGATGTTACGACGGTTGCGGTACAAATCATAAATCTCTTCACC
CCAAGTCTTGATTGGGACCAGTCGAAAAAGTTCCAACTTCTTATCGAAAC
TTGTTTGACAAACGTTGACAGTATTGACACGAGATAACAACTTAATGTCT
CGTTCATCGTAACTATAAAACTTGGAGAGGNAATAATGACGGATTAGAGA
GGGCTGCACTGGGAAATATTGCCTGAGTAACACAGAACTTAGTAAAACTA
TATATTTATTTATCTTAACAGACCTTCACTTggaatggaaaaaaaaacat
tctcaaATATTACGTCAAGATTTAAACGATAAAATGACAGTAGACGAAAT
TAAGCGCAATTTCATTCAGCAAAGGACCCACAACAAAAAGTTTGGACGTT
TATTTCTAAAGTTATATGTCCAAAATGAAAAGATCTCATCAATatcattc
aaaaactgaaatCTGCAACCTGTACAATATGTCCAGAATGTCTACTTTAA
CAATATTGTTCAATCAAAAGACAATATTTATGAAGCTTTGCAGTGCTTCT
TATGCTCACTCCAATGTTTAGCTTGACATTCTTTTCCACAATAACTCACC
GCACGACAACGTCCACACTTCTTAAATCGTTTCTGCGCACTCTCCGACAT
CGTCTGCTCTCCGCCTGACTTGCTACGCGGGCAGCTAGATAGTGCACagg
ttttgattttctttgtttttttctctttctctcgTTTTTCGCCGTCGTCA
TCGTCGATCTCAACGATTTTCGGCGCCGGTTGTTTCTCCGACTTCGGATT
TTCTTTCGAATGACTTCTTTGGCAATCCGAATTCTTTGCTTTCGGATTCG
GTATAATTGAAATAATAGCTCTTGTTTTTGTTccgtttttgtttttcaac
ttAGTTATTCCAACCTCATTTTTGCATGCACTAAATGTCTCAGCGATTTT
CAAACTGGACTGTAAAGCTTCTACAAGCTTGTTATCACGAGGACCTTTAA
CGGCTTGCTTATCCGATTTCTTCTTAGTATCGCCAAAACCGAGCTTTGCG
TATTGCTTTTTGGTGAGAGCATCTTTGAAATCACCTCCATCAgacaaata
aaaacaattagcTTCATCTTGGTACATCTCATTAACGGCAGAAACTAAAG
AACGAGTGATATGCTTGGAGACATCAAGCTCGTCATGGTGCATAATATGT
GCCATGCAAGCAACAGCGATGGTGCTATATCGATCAGGCATAGATTTATC
TGAGATTGTAGCGATCAAAACTTCCATCATCTTATCCGCTACCGATTGAG
GGATTTTCGACGTTTCTTTGTTGAGACCGTCCGCTTTTACGTAATCCAAC
ATTTTCGTCCAGTTTTCGCCGTTGACGTAAACGCACATGTTACGGAAGGT
GTCGGGTTTCAAGGAGCGAAAGAGTTGCATTCGTTCGCCGTTCAGCTCTT
CAAGGACACCAGATGATTTCATGTGATACAAGATGCATAAATCGTAGTGA
ATCAGCTTGACAGTGACGGGCATTAATTGCGAATACAAATTCTTATTGAT
GTTACGACGGTTGCGGTACAAATCATAAATCTCTTCACCCCAAGTCTTGA
TTGGGACCAGTCGAAAAAGTTCCAACTTCTTATCGAAACTTGTTTGACAA
ACGTTGACAGTATTGACGCGAGATAACAACTTAATGTCCTTTTCATCGTA
ACTATAAAACTTGGAGAGGACTTCTACGGTGTTATTGGTGAAGATGGAAG
GGCATTCTTTCTCTTCCAAAGGACCGATAGCGACTAACAGATTCAAAGCA
CATGAGATCAATTGATCTTTAGTGTCTTTATTACACTTGGACATCGTGGT
AGGGAACGCTTTCAACACACATATTGCATAATCTTGAAACTTCTCTTTAA
TGATGGATTCCTTTTCACTTTCAACTCTTTCGGTAACGATGATGAATGAA
AAGATTTTATCATCTAGTCCACCCTTCGTGATCATATGTTTCAAACGTGA
AAACTCAACTTGAATTAATTCCTCTTTACACGGTCGTTGGAAAGAGAATC
CGGATTTTAGTGCGAGATCAAGGAAACGTAGAGTGTGCAAGATAATCTTT
TGAGCCAACGCTCGACGATAATTCACTTCGTCGTGGACAGCAAATTTCAA
GATGAGCGAATAATCTAACTGATCTAATAGCTTACGAAGTAACTCGAATC
TGGAATCTGTGGTGTCGATAGACATCAGTGCATCAATGGAGAAAAGGAGT
GGTGAATGCATTCGTTGACATGATTTGTTGCTCAGCAAGTCCATCAAGAT
TGGGATTCCAGGGTCGAGGAGAAGGAAGAGATCAATCATAACAGGTCTTG
TAAGAGACAAACGAGTGAATAATGCAATGAGATCGACCGGCTGCGTATCT
TTCAATGAATACCATTCCTTTTGTGCGACGGCCGTTGCAAAAAGCGGTGA
AACGATACGGTCGTAGCTAAATTCGTAATCCTCAAGTCTAGCTTTCCCTT
GAAGTTCATAAAGTTTCTTAAAGATGGGATACATTTTGTTATGATGGAAT
GAACCATCTAAATACAAGAACTCATCAACGACAATCATATACGGTCCACA
ACAAAGTTGTTTCGTTTTCTCAGTAAAAGCAGAGCTGACAACAGTTAAAA
ACACTGTGATGCTTTCCAGAAATACGTGATCCGGTAATAAGAGTATCCGG
TCGAAAAGCATGAACCAAAAACGCCTGGCGTTGTAAATTTGGTAATGATA
TTTCTTGGAGCGTGTGATGCATGTGTATGCCAACTGAACAACCGATGATA
CATAACGCTCGTTACGAAGTCCAGCTGTTAACAAGCTAGTTAATAGTTCC
ACTGTCTCTTCCGCACTAAAAAGAGCATCCGGATGTACCCCACTGTTATG
AATATCTTTGACATTACTTGAAAAACCTTCACATACATCATCAATAGCGc
cccaatttttcgattttatatTACGGAAATCATCGAAAAAGCATTTTTTC
CATCCTCTGACGTCATCTTCNTTTATATTACGGAAATCATCGAAAAAGCA
TCTTTTCCATCCTCTGACGTCATCTTCGCCATTTGCAAACCAATCATCAT
CGACGATGAGGACGTCACCATTCAAACAATGTAAGCATAGAGTTTTCGAT
AGCTGTTCTTGCTGTTGGGCTGCCATCTTGTTTAtctattttgtattttc
tttgtttgctAAAAc
Run BLAST on NCBI

transcript from alignment at scaffold_242:157791..162355+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054191 ID=TCONS_00054191|Name=TCONS_00054191|organism=Clytia hemisphaerica|type=transcript|length=4565bp|location=Sequence derived from alignment at scaffold_242:157791..162355+ (Clytia hemisphaerica)
CGGATTAGAGAGGGCTGCACTGGGAAATATTGCCTGAGTAACACAGAACT
TAGTAAAACTATATATTTATTTATCTTAACAGACCTTCACTTggaatgga
aaaaaaaacattctcaaATATTACGTCAAGATTTAAACGATAAAATGACA
GTAGACGAAATTAAGCGCAATTTCATTCAGCAAAGGACCCACAACAAAAA
GTTTGGACGTTTATTTCTAAAGTTATATGTCCAAAATGAAAAGATCTCAT
CAATatcattcaaaaactgaaatCTGCAACCTGTACAATATGTCCAGAAT
GTCTACTTTAACAATATTGTTCAATCAAAAGACAATATTTATGAAGCTTT
GCAGTGCTTCTTATGCTCACTCCAATGTTTAGCTTGACATTCTTTTCCAC
AATAACTCACCGCACGACAACGTCCACACTTCTTAAATCGTTTCTGCGCA
CTCTCCGACATCGTCTGCTCTCCGCCTGACTTGCTACGCGGGCAGCTAGA
TAGTGCACaggttttgattttctttgtttttttctctttctctcgTTTTT
CGCCGTCGTCATCGTCGATCTCAACGATTTTCGGCGCCGGTTGTTTCTCC
GACTTCGGATTTTCTTTCGAATGACTTCTTTGGCAATCCGAATTCTTTGC
TTTCGGATTCGGTATAATTGAAATAATAGCTCTTGTTTTTGTTccgtttt
tgtttttcaacttAGTTATTCCAACCTCATTTTTGCATGCACTAAATGTC
TCAGCGATTTTCAAACTGGACTGTAAAGCTTCTACAAGCTTTTTATCACG
AGGACCTTTAACGGCTTGCTTATCCGATTTCTTCTTAGTATCGCCAAAAC
CGAGCTTTGCGTATTGCTTTTTGGTGATAGCATCTTTGAAATCACCTCCA
TCAgacaaataaaaacaattagcTTCATCTTGGTACATCTCATTAACGGT
GGAAACTAAAGAACGAGTGATATGCTTGGAGACATCAAGCTCGTCATGGT
GCATAATATGTGCCATGCAAGCAACAGCGATGGTGCTATATCGATCAGGC
ATAGATTTATCTGAGATTGTAGCGATCAAAACTTCCATCATCTTATCCGC
TACCGATTGAGGGATTTTCGACGTTTCTTTGTTGAGACCGTCCGCTTTTA
CGTAATCCAACATTTTCGTCCAGTTTTCGCCGTTGACGTAAACGCACATG
TTACGGAAGGTGTCGGGTTTCAAGGAGCGAAAGAGTTGCATTCGTTCGCC
GTTCAGCTCTTCAAGGACACCAGATGATTTCATGTGATACAAGATGCATA
AATCGTAGTGAATCAGCTTGACAGTGACGGGCATTAATTGCGAATACAAA
TTCTTATTGATGTTACGACGGTTGCGGTACAAATCATAAATCTCTTCACC
CCAAGTCTTGATTGGGACCAGTCGAAAAAGTTCCAACTTCTTATCGAAAC
TTGTTTGACAAACGTTGACAGTATTGACACGAGATAACAACTTAATGTCT
CGTTCATCGTAACTATAAAACTTGGAGAGGNAATAATGACGGATTAGAGA
GGGCTGCACTGGGAAATATTGCCTGAGTAACACAGAACTTAGTAAAACTA
TATATTTATTTATCTTAACAGACCTTCACTTggaatggaaaaaaaaacat
tctcaaATATTACGTCAAGATTTAAACGATAAAATGACAGTAGACGAAAT
TAAGCGCAATTTCATTCAGCAAAGGACCCACAACAAAAAGTTTGGACGTT
TATTTCTAAAGTTATATGTCCAAAATGAAAAGATCTCATCAATatcattc
aaaaactgaaatCTGCAACCTGTACAATATGTCCAGAATGTCTACTTTAA
CAATATTGTTCAATCAAAAGACAATATTTATGAAGCTTTGCAGTGCTTCT
TATGCTCACTCCAATGTTTAGCTTGACATTCTTTTCCACAATAACTCACC
GCACGACAACGTCCACACTTCTTAAATCGTTTCTGCGCACTCTCCGACAT
CGTCTGCTCTCCGCCTGACTTGCTACGCGGGCAGCTAGATAGTGCACagg
ttttgattttctttgtttttttctctttctctcgTTTTTCGCCGTCGTCA
TCGTCGATCTCAACGATTTTCGGCGCCGGTTGTTTCTCCGACTTCGGATT
TTCTTTCGAATGACTTCTTTGGCAATCCGAATTCTTTGCTTTCGGATTCG
GTATAATTGAAATAATAGCTCTTGTTTTTGTTccgtttttgtttttcaac
ttAGTTATTCCAACCTCATTTTTGCATGCACTAAATGTCTCAGCGATTTT
CAAACTGGACTGTAAAGCTTCTACAAGCTTGTTATCACGAGGACCTTTAA
CGGCTTGCTTATCCGATTTCTTCTTAGTATCGCCAAAACCGAGCTTTGCG
TATTGCTTTTTGGTGAGAGCATCTTTGAAATCACCTCCATCAgacaaata
aaaacaattagcTTCATCTTGGTACATCTCATTAACGGCAGAAACTAAAG
AACGAGTGATATGCTTGGAGACATCAAGCTCGTCATGGTGCATAATATGT
GCCATGCAAGCAACAGCGATGGTGCTATATCGATCAGGCATAGATTTATC
TGAGATTGTAGCGATCAAAACTTCCATCATCTTATCCGCTACCGATTGAG
GGATTTTCGACGTTTCTTTGTTGAGACCGTCCGCTTTTACGTAATCCAAC
ATTTTCGTCCAGTTTTCGCCGTTGACGTAAACGCACATGTTACGGAAGGT
GTCGGGTTTCAAGGAGCGAAAGAGTTGCATTCGTTCGCCGTTCAGCTCTT
CAAGGACACCAGATGATTTCATGTGATACAAGATGCATAAATCGTAGTGA
ATCAGCTTGACAGTGACGGGCATTAATTGCGAATACAAATTCTTATTGAT
GTTACGACGGTTGCGGTACAAATCATAAATCTCTTCACCCCAAGTCTTGA
TTGGGACCAGTCGAAAAAGTTCCAACTTCTTATCGAAACTTGTTTGACAA
ACGTTGACAGTATTGACGCGAGATAACAACTTAATGTCCTTTTCATCGTA
ACTATAAAACTTGGAGAGGACTTCTACGGTGTTATTGGTGAAGATGGAAG
GGCATTCTTTCTCTTCCAAAGGACCGATAGCGACTAACAGATTCAAAGCA
CATGAGATCAATTGATCTTTAGTGTCTTTATTACACTTGGACATCGTGGT
AGGGAACGCTTTCAACACACATATTGCATAATCTTGAAACTTCTCTTTAA
TGATGGATTCCTTTTCACTTTCAACTCTTTCGGTAACGATGATGAATGAA
AAGATTTTATCATCTAGTCCACCCTTCGTGATCATATGTTTCAAACGTGA
AAACTCAACTTGAATTAATTCCTCTTTACACGGTCGTTGGAAAGAGAATC
CGGATTTTAGTGCGAGATCAAGGAAACGTAGAGTGTGCAAGATAATCTTT
TGAGCCAACGCTCGACGATAATTCACTTCGTCGTGGACAGCAAATTTCAA
GATGAGCGAATAATCTAACTGATCTAATAGCTTACGAAGTAACTCGAATC
TGGAATCTGTGGTGTCGATAGACATCAGTGCATCAATGGAGAAAAGGAGT
GGTGAATGCATTCGTTGACATGATTTGTTGCTCAGCAAGTCCATCAAGAT
TGGGATTCCAGGGTCGAGGAGAAGGAAGAGATCAATCATAACAGGTCTTG
TAAGAGACAAACGAGTGAATAATGCAATGAGATCGACCGGCTGCGTATCT
TTCAATGAATACCATTCCTTTTGTGCGACGGCCGTTGCAAAAAGCGGTGA
AACGATACGGTCGTAGCTAAATTCGTAATCCTCAAGTCTAGCTTTCCCTT
GAAGTTCATAAAGTTTCTTAAAGATGGGATACATTTTGTTATGATGGAAT
GAACCATCTAAATACAAGAACTCATCAACGACAATCATATACGGTCCACA
ACAAAGTTGTTTCGTTTTCTCAGTAAAAGCAGAGCTGACAACAGTTAAAA
ACACTGTGATGCTTTCCAGAAATACGTGATCCGGTAATAAGAGTATCCGG
TCGAAAAGCATGAACCAAAAACGCCTGGCGTTGTAAATTTGGTAATGATA
TTTCTTGGAGCGTGTGATGCATGTGTATGCCAACTGAACAACCGATGATA
CATAACGCTCGTTACGAAGTCCAGCTGTTAACAAGCTAGTTAATAGTTCC
ACTGTCTCTTCCGCACTAAAAAGAGCATCCGGATGTACCCCACTGTTATG
AATATCTTTGACATTACTTGAAAAACCTTCACATACATCATCAATAGCGc
cccaatttttcgattttatatTACGGAAATCATCGAAAAAGCATTTTTTC
CATCCTCTGACGTCATCTTCNTTTATATTACGGAAATCATCGAAAAAGCA
TCTTTTCCATCCTCTGACGTCATCTTCGCCATTTGCAAACCAATCATCAT
CGACGATGAGGACGTCACCATTCAAACAATGTAAGCATAGAGTTTTCGAT
AGCTGTTCTTGCTGTTGGGCTGCCATCTTGTTTAtctattttgtattttc
tttgtttgctAAAAc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034181XLOC_034181Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054191-exon-scaffold_242-1491911889:157791..162355TCONS_00054191-exon-scaffold_242-1491911889:157791..162355Clytia hemisphaericaexon
TCONS_00054191-exon-scaffold_242-1510915933:157791..162355TCONS_00054191-exon-scaffold_242-1510915933:157791..162355Clytia hemisphaericaexon
TCONS_00054191-exon-scaffold_242-1575043694:157791..162355TCONS_00054191-exon-scaffold_242-1575043694:157791..162355Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_242supercontigscaffold_242:157791..162355 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.10988	0.0566668	0.150639	0.0932195	0.0247983	0.188986	0	0.0400028	0.11685	0.0560934	0	0	0.0387785	0	0	0.0319225	0	0	0	0	0.365918	0.143191	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054191 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top