TCONS_00054233 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054233
Unique NameTCONS_00054233
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length198

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054233 ID=TCONS_00054233|Name=TCONS_00054233|organism=Clytia hemisphaerica|type=transcript|length=198bp
TCTTTACATTGAAACTTTGTTTTTGGTTTATTGTGATTATCTTATTTTCT
TTAGTCCAAAGGAACGACTATCAAAGATGCTTTAGCAAAATGGGAAGCAG
ACTCCGGCACTAAAGCATCAGAATCTGAAGAAATTAAATTGATAGCACAA
ATACCTCCTGTTGAAAAAATGGATGCTTCTTTGTCAACACTTGGAACA
Run BLAST on NCBI

transcript from alignment at scaffold_242:809904..810819+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054233 ID=TCONS_00054233|Name=TCONS_00054233|organism=Clytia hemisphaerica|type=transcript|length=916bp|location=Sequence derived from alignment at scaffold_242:809904..810819+ (Clytia hemisphaerica)
TCTTTACATTGAAACTTTGTTTTTGGTTTATTGTGATTATCTTATTTTCT
TTAGTCCAAAGGAACGACTATCAAAGATGCTTTAGCAAAATGGGTATGTT
AAATTGTATCTAAAGTCACTTTGTATAATGTCTTGGTACAGAGTGACAAG
AGAACAGTTTTAGTGCCAATATTACACAAAACTAACTAAACCTTTATTTA
TCTATTTGTCATTCatatattatttttcattgaatattGCATCCTCCTTT
TTGATATACTCATCGTTTTGAGCCTCTATTTTGGTATAAGTGATCTTCAA
AACAATCATATTTCTTATGCTTTtctaaaatgaatttgaatacttgattt
taaatatattttcatatatgAAAAAGTACTCATTATACAGTGTGTTCCAG
GTGGATAAATTCGTCTATAAATTCAAATCCACAAAATTCATTATCTAAAG
TGGGTTTAGAATAATTtaagtaaaattaaaattttctgttcaattaatag
atattcaatttccaagaTGACTTAATaggtttttgagattgaaatattgA
GTATGCAAGTCATAAAAATTCGCATGAATCATGAAGATTATActttatac
acgctttttcttttataagaatatcagggtgagatttcaaatttaaaaca
atagaaaaataagaacaatgctcactctcaaccaaagtacactattatta
taaaagaaaaagcgtgtattaaaaTTTGTCTACTTTTTTGGAcgcaatgt
ttacaaaaactaAACATAATCTGTTATATATTTGAATATGTGGGGTTTAT
TTTCTTACCAGGAAGCAGACTCCGGCACTAAAGCATCAGAATCTGAAGAA
ATTAAATTGATAGCACAAATACCTCCTGTTGAAAAAATGGATGCTTCTTT
GTCAACACTTGGAACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034209XLOC_034209Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054233-exon-scaffold_242-1491911889:809904..809996TCONS_00054233-exon-scaffold_242-1491911889:809904..809996Clytia hemisphaericaexon
TCONS_00054233-exon-scaffold_242-1510915933:809904..809996TCONS_00054233-exon-scaffold_242-1510915933:809904..809996Clytia hemisphaericaexon
TCONS_00054233-exon-scaffold_242-1575043694:809904..809996TCONS_00054233-exon-scaffold_242-1575043694:809904..809996Clytia hemisphaericaexon
TCONS_00054233-exon-scaffold_242-1491911889:810715..810819TCONS_00054233-exon-scaffold_242-1491911889:810715..810819Clytia hemisphaericaexon
TCONS_00054233-exon-scaffold_242-1510915933:810715..810819TCONS_00054233-exon-scaffold_242-1510915933:810715..810819Clytia hemisphaericaexon
TCONS_00054233-exon-scaffold_242-1575043694:810715..810819TCONS_00054233-exon-scaffold_242-1575043694:810715..810819Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_242supercontigscaffold_242:809904..810819 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
15.4192	15.0362	23.2779	24.6716	221.799	153.36	151.983	123.726	31.7619	23.2477	31.2435	31.9484	3.41828	3.54992	0.972839	2.08801	20.5781	13.1824	14.5698	3.81155	3.31293	0	3.92875	3.57181	148.995	123.124	11.746	0	1.90157	7.7496
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054233 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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