TCONS_00054417 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054417
Unique NameTCONS_00054417
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length850

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054417 ID=TCONS_00054417|Name=TCONS_00054417|organism=Clytia hemisphaerica|type=transcript|length=850bp
ttattttctaaaataatttaCAGGAAAGATTCATTTAAATCCCACTCGCT
TAGAGAAAGTTTTTCTAGTACTATAAGCGATCAACCAAATCTACTttcat
tttgtgaaaatttaccTGCACATGCTTGGAGGATTTTCATACTTTGGTTT
TATAATGCAGTTTTTAGTTGAGTTTTGAGCTTAGGTTTCAACTATGAACA
TCAAAATGATTCAGAGTTCAAGACAATTAATCAGGTCACAATGTTGGATT
CGTTTTTTTCACCACCGAAACCTACCGAAAGATGGAGTTTTTAAATTATG
GAATTATACAGGTCAAAACTCTGGGTATTTTTGGATGTTTCCAATTAGAC
AAAGGCAATCAGCCCTCTCTAGCCGTTCAttttacagtaatttttgttct
ACAAGAAACATATGTTCTTCAGCCACTCTGCTTGAAGAAAAGCAGCCTAT
TGGGAAAATTGAAGGAACATTATATTTAGAGTTCACATGCAATGTCTGTG
AGCATCGTTCAAGTAAAACTTTAAGTAAACAAGCATATCAAAGTGGTGTT
GTTTTGATACGTTGTGAGGGGTGCCAAAATTTGCATTTGATTGCTGATAA
CCTTGGTTGGTTTAGAGACAACAAAGTGAATATCGAAGATCTAATGAAGG
AAAAAGGCGAAGAAGTGAAGCAACTCAGTGTGGACGATTTGCAATTTGTT
CCGAAATGATTCCAATATTCTGGTAATCCCAATTTTGTAcatttatcttt
ttcatttattatttttaaaaatcacgcTTGTATCTTGttttatggtcaaa
atattttgaaaatcctttaaatttttgagACATATTCTTGAGAAATTCTC
Run BLAST on NCBI

protein sequence of TCONS_00054417-protein

>TCONS_00054417-protein ID=TCONS_00054417-protein|Name=TCONS_00054417-protein|organism=Clytia hemisphaerica|type=polypeptide|length=171bp
MNIKMIQSSRQLIRSQCWIRFFHHRNLPKDGVFKLWNYTGQNSGYFWMFP
IRQRQSALSSRSFYSNFCSTRNICSSATLLEEKQPIGKIEGTLYLEFTCN
VCEHRSSKTLSKQAYQSGVVLIRCEGCQNLHLIADNLGWFRDNKVNIEDL
MKEKGEEVKQLSVDDLQFVPK
Run BLAST on NCBI

transcript from alignment at scaffold_242:1572489..1575254-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054417 ID=TCONS_00054417|Name=TCONS_00054417|organism=Clytia hemisphaerica|type=transcript|length=2766bp|location=Sequence derived from alignment at scaffold_242:1572489..1575254- (Clytia hemisphaerica)
TTATTTTCTAAAATAATTTACAGGAAAGATTCATTTAAATCCCACTCGCT
TAGAGAAAGTTTTTCTAGTACTATAAGCGATCAACCAAATCTACTTTCAT
TTTGTGAAAATTTACCTGCACATGCTTGGAGGATTTTCATACTTTGGTTT
TATAATGCAGTTTTTAGTTGAGTTTTGAGCTTAGGTTTCAACTATGAACA
TCAAAATGATTCAGAGTTCAAGACAATTAATCAGGTCACAATGTTGGATT
CGTTTTTTTCACCACCGAAACCTACCGAAAGATGGAGTTTTTAAATTATG
GAATTATACAGGTCAAAACTCTGGGTATTTTTGGATGTTTCCAATTAGAC
AAAGGCAATCAGCCCTCTCTAGCCGTTCATTTTACAGTAATTTTTGTTCT
ACAAGAAACATATGTTCTTCAGCCACTCTGCTTGAAGAAAAGCAGCCTAT
TGGGAAAATTGAAGGAACATTATATTTAGAGTTCACATGCAATGTCTGTG
AGCATCGTTCAAGTAAAACTTTAAGTAAACAAGCATATCAAAGTGGTGTT
GTTTTGATACGTTGTGAGGGGTGCCAAAATTTGCATTTGATTGCTGATAA
CCTTGGTTGGTTTAGAGACAACAAAGTGTAAGTATTGTTTTACTGCACTA
CACTTTTTTTTTTTTATAAGGAACACGTTTATAAGGAACTCGAGGCTGAA
AATGGTTCAAAAAATAAGGAATTGTTAAGGAACTGCTCAGGCTGAGAATA
AGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNGATTCAGGTAACTCTCATCCTTGTTG
TTGAAATGTATCCTGTAGATGACTGATGTTTTTTTTTCTGAAAGCTAGAT
TTCCTAGTGTGACTAACTGTTAAGGTTCCTTATAAAAAAAAAAACCTGTA
TAAGACCGCCAGAGGGTCTAAATCAAACAGAACCGACGATCAAACCAGTC
AAACCAAATCAAATGAAATCAAGTGATTGAAATTTGATTGTTGAACAGGC
ACAGGTTCGATATTCAATAGAATATTACCACAATTTGCAGATTCTATTAT
TAATATTTGATTTCGTCGTTTGAGATTTGAATTGCGTTCAATTTTGACAT
ATGATTGAGATTCGATTGCAAAAATTATTTTCTATCAAAAATAGTACAAA
TTTTCTTCTTCTTTTTTCTTCACTTTCTTACTTGTATTTTGAAAAACTAA
CCAGTAGAAAATATAATCGTATTCAAATTTGTTTCCAATGATACCGAACT
TTTTATTATACAACAACTGGTTGGAAAGTATTGGCCAAAATAAAAAATCC
TACACACCTTTTTGACACACACTTTATAACATTATTTCAAAATTTATGTT
TTTTTGTTTAGATATTTTAATGTTCTGTAGATACTTTTTTAAATTGATAC
ACTTCTATTGAGCTGTATATGGTTCTTGTGAGAGCCAGTTGCAAAAAAAT
TGCGTCACCTGTATATAACCCAAAATACATTTTTAACTTGCCTTCACTCA
CGTGAGAAAAAATACAAATGACTACCAAATTTTTATCAATTTTATTCACA
TATATTGATATCTTTTCAAAAAGCCCTGGACTATCATCGTACTTCCTCAA
ACCTGATGTATAAAAGTTCTGCAAAACATTTACGAGGTTATAGGTCTTAT
GTTACACTGCATCGAAACGTGCCAACTTTGAGCCAACAGTGACAATTAAA
TGGTGAATTGGACTGTGACGGAGATCGATGAAATGAAATGAAAAGTTAGA
AAAACTACCTTGCATTTAAAGCCGAAGATTTGGAAAATGAACAGCAAGAC
AAGTTATTAGCAGAAAGTTCACTTTGCCTTAAATATAGTTTTGCTCCGAT
TTGGTAAAATAATGAAATATTGTTTAAAATTGCTTTTTTTTAGGAATATC
GAAGATCTAATGAAGGAAAAAGGCGAAGAAGTGAAGCAACTCAGTGTGGA
CGATTTGCAATTTGTTCCGAAATGATTCCAATATTCTGGTAATCCCAATT
TTGTACATTTATCTTTTTCATTTATTATTTTTAAAAATCACGCTTGTATC
TTGTTTTATGGTCAAAATATTTTGAAAATCCTTTAAATTTTTGAGACATA
TTCTTGAGAAATTCTC

Coding sequence (CDS) from alignment at scaffold_242:1572489..1575254-

>TCONS_00054417 ID=TCONS_00054417|Name=TCONS_00054417|organism=Clytia hemisphaerica|type=CDS|length=1032bp|location=Sequence derived from alignment at scaffold_242:1572489..1575254- (Clytia hemisphaerica)
GAATATCGAAGATCTAATGAAGGAAAAAGGCGAAGAAGTGAAGCAACTCA
GTGTGGACGATTTGCAATTTGTTCCGAAATGAATGAACATCAAAATGATT
CAGAGTTCAAGACAATTAATCAGGTCACAATGTTGGATTCGTTTTTTTCA
CCACCGAAACCTACCGAAAGATGGAGTTTTTAAATTATGGAATTATACAG
GTCAAAACTCTGGGTATTTTTGGATGTTTCCAATTAGACAAAGGCAATCA
GCCCTCTCTAGCCGTTCATTTTACAGTAATTTTTGTTCTACAAGAAACAT
ATGTTCTTCAGCCACTCTGCTTGAAGAAAAGCAGCCTATTGGGAAAATTG
AAGGAACATTATATTTAGAGTTCACATGCAATGTCTGTGAGCATCGTTCA
AGTAAAACTTTAAGTAAACAAGCATATCAAAGTGGTGTTGTTTTGATACG
TTGTGAGGGGTGCCAAAATTTGCATTTGATTGCTGATAACCTTGGTTGGT
TTAGAGACAACAAAGTGAATATCGAAGATCTAATGAAGGAAAAAGGCGAA
GAAGTGAAGCAACTCAGTGTGGACGATTTGCAATTTGTTCCGAAATGAAT
GAACATCAAAATGATTCAGAGTTCAAGACAATTAATCAGGTCACAATGTT
GGATTCGTTTTTTTCACCACCGAAACCTACCGAAAGATGGAGTTTTTAAA
TTATGGAATTATACAGGTCAAAACTCTGGGTATTTTTGGATGTTTCCAAT
TAGACAAAGGCAATCAGCCCTCTCTAGCCGTTCATTTTACAGTAATTTTT
GTTCTACAAGAAACATATGTTCTTCAGCCACTCTGCTTGAAGAAAAGCAG
CCTATTGGGAAAATTGAAGGAACATTATATTTAGAGTTCACATGCAATGT
CTGTGAGCATCGTTCAAGTAAAACTTTAAGTAAACAAGCATATCAAAGTG
GTGTTGTTTTGATACGTTGTGAGGGGTGCCAAAATTTGCATTTGATTGCT
GATAACCTTGGTTGGTTTAGAGACAACAAAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034298XLOC_034298Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054417-proteinTCONS_00054417-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054417-exon-scaffold_242-1575043694:1574628..1575254TCONS_00054417-exon-scaffold_242-1575043694:1574628..1575254Clytia hemisphaericaexon
TCONS_00054417-exon-scaffold_242-1575043694:1572489..1572711TCONS_00054417-exon-scaffold_242-1575043694:1572489..1572711Clytia hemisphaericaexon
TCONS_00054417-exon-scaffold_242-1510915933:1574628..1575254TCONS_00054417-exon-scaffold_242-1510915933:1574628..1575254Clytia hemisphaericaexon
TCONS_00054417-exon-scaffold_242-1510915933:1572489..1572711TCONS_00054417-exon-scaffold_242-1510915933:1572489..1572711Clytia hemisphaericaexon
TCONS_00054417-exon-scaffold_242-1491911889:1574628..1575254TCONS_00054417-exon-scaffold_242-1491911889:1574628..1575254Clytia hemisphaericaexon
TCONS_00054417-exon-scaffold_242-1491911889:1572489..1572711TCONS_00054417-exon-scaffold_242-1491911889:1572489..1572711Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_242supercontigscaffold_242:1572489..1575254 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
33.0978	28.4975	30.5816	33.1688	2.98557	2.35924	3.48674	4.92967	5.73675	3.69738	1.68223	3.75983	3.12884	2.59946	6.59991	6.64426	7.64504	6.43057	0.882534	2.89366	5.56536	5.16816	19.5458	20.597	3.50602	3.39422	3.26337	1.86287	9.5833	11.0782
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR007853Znf_DNL-typ
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0008270 zinc ion binding
Blast
[Close]
BLAST of TCONS_00054417 vs. Swiss-Prot (Human)
Match: DNLZ (DNL-type zinc finger protein OS=Homo sapiens GN=DNLZ PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.094e-21
Identity = 45/99 (45.45%), Postives = 65/99 (65.66%), Query Frame = 2 
Query:  449 IGKIEGTLY-LEFTCNVCEHRSSKTLSKQAYQSGVVLIRCEGCQNLHLIADNLGWFRD--NKVNIEDLMKEKGEEVKQLSVDD-LQFVPK*FQYSGNPN 733
            +G++E   Y L +TC VC  RSSK +SK AY  GVV++ C GCQN H+IADNLGWF D   K NIE+++  +GE+V +++ +  L+ V    + +G P 
Sbjct:   61 LGRVEAAHYQLVYTCKVCGTRSSKRISKLAYHQGVVIVTCPGCQNHHIIADNLGWFSDLNGKRNIEEILTARGEQVHRVAGEGALELV---LEAAGAPT 156
The following BLAST results are available for this feature:
BLAST of TCONS_00054417 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DNLZ1.094e-2145.45DNL-type zinc finger protein OS=Homo sapiens GN=DN... [more]
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