TCONS_00054480 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054480
Unique NameTCONS_00054480
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length429

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054480 ID=TCONS_00054480|Name=TCONS_00054480|organism=Clytia hemisphaerica|type=transcript|length=429bp
CTCAGTTACTTCGCACTGCAAGAGAGTTAGGATTCTGTTACTTTTGTAAA
CCGTCATGTCAACGAAGtgaagtttctttttaaatggttAAACAGAAAAT
GATTACATGTTCATCGTCACCTTTCCACCACATTTCGCCACCATCGAGGT
AAAAGGTCCAATCTTAAAAGTGTGTCTGAGATGACTTTGCTAATTCAAGA
TTTTAAGATGGGTCTTTTTGACTTGTAGATAGTATTCTTTTCCGCTACAA
GAAAGTCacactaattttgagattggaccttttgcCTTGATGGCAGAGAA
TTGTGGGTGTTTTAACGAAATTTGAAGCCAGTGATTTGCAGCTTGTTAGC
TTCCATCAAAACGCCTATCACCGATTTATTAATTCAATCGTATCGCAACA
TGCACTGTCATTATATACAGAAATCAATT
Run BLAST on NCBI

transcript from alignment at scaffold_242:1138697..1139125

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054480 ID=TCONS_00054480|Name=TCONS_00054480|organism=Clytia hemisphaerica|type=transcript|length=429bp|location=Sequence derived from alignment at scaffold_242:1138697..1139125 (Clytia hemisphaerica)
AATTGATTTCTGTATATAATGACAGTGCATGTTGCGATACGATTGAATTA
ATAAATCGGTGATAGGCGTTTTGATGGAAGCTAACAAGCTGCAAATCACT
GGCTTCAAATTTCGTTAAAACACCCACAATTCTCTGCCATCAAGgcaaaa
ggtccaatctcaaaattagtgtGACTTTCTTGTAGCGGAAAAGAATACTA
TCTACAAGTCAAAAAGACCCATCTTAAAATCTTGAATTAGCAAAGTCATC
TCAGACACACTTTTAAGATTGGACCTTTTACCTCGATGGTGGCGAAATGT
GGTGGAAAGGTGACGATGAACATGTAATCATTTTCTGTTTaaccatttaa
aaagaaacttcaCTTCGTTGACATGACGGTTTACAAAAGTAACAGAATCC
TAACTCTCTTGCAGTGCGAAGTAACTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034343XLOC_034343Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054480-exon-scaffold_242-1491911889:1138697..1139125TCONS_00054480-exon-scaffold_242-1491911889:1138697..1139125Clytia hemisphaericaexon
TCONS_00054480-exon-scaffold_242-1510915933:1138697..1139125TCONS_00054480-exon-scaffold_242-1510915933:1138697..1139125Clytia hemisphaericaexon
TCONS_00054480-exon-scaffold_242-1575043694:1138697..1139125TCONS_00054480-exon-scaffold_242-1575043694:1138697..1139125Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_242supercontigscaffold_242:1138697..1139125 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.18259	0.178635	0	0	0.207328	0.776393	0	0.168325	0	0	0.321752	1.67071	0.366281	0.0982688	0	0.868572	0	0	0	0	0	0	0.178235	0	0	0	1.43191	0.911806
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054480 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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