TCONS_00054503 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054503
Unique NameTCONS_00054503
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length737

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054503 ID=TCONS_00054503|Name=TCONS_00054503|organism=Clytia hemisphaerica|type=transcript|length=737bp
CGGAAAGACCAACCCATCAGACTTAGCTACAAGAGAGGAAGGGTTGAAAG
CAGTAGAAGACGATGTATGGCTCAACGGTCCAGCGTACCTTAGGCTACCT
GAATCGGAATGGCCATCAATCCCGAAGATTCCCTTAGATGAAAACTACAT
TGAACTTCGAAGGGTAAACGTCACGCAAATGAACGTAACCAAACCTCTTC
TACAATACGAGAGATTCTCCTCTTGGCGAAAAATCGTCCGTGTCATTGCA
TGGATACACATCTTCTTCAAGAATTTCAAGGCAAGTCGAAAATCGTCGAG
CAAATCCAAGCAACTGACATCCACGCAAAGACTAGAAATCATCTCATCAA
GTCCAACTTATCAACCAACTCTACAACAAGAAGAGTCAAGTGAGCACCAG
CTTGTCAAACTCATCCAAAACGAATTCTTCCCAGATGTAATGAAGCAAAT
CCAAGAAGGACGTCAACTGAAAGGTTCTCTAAAGAAACTTGATGTGTTCC
TAGATGATCAAGGAGTTATGCGTGTCGGTGGTAGATTAAAGTATGGAGAC
TTTCCCTATGCATCCAAACATCAAATCGTCCTACCAGCCAAACAACCTGT
CGTCATCTTACTGGGCAGAAAGTTTCACAACCAATTCCACCATGTCGGAA
AAGAGCACATGTTGTCACTCCTTCGGCAGCGTTACTGGATTATCGGTGGA
AGAGCCATGTGTAGACAGATCATACAATCATGCATCA
Run BLAST on NCBI

protein sequence of TCONS_00054503-protein

>TCONS_00054503-protein ID=TCONS_00054503-protein|Name=TCONS_00054503-protein|organism=Clytia hemisphaerica|type=polypeptide|length=245bp
GKTNPSDLATREEGLKAVEDDVWLNGPAYLRLPESEWPSIPKIPLDENYI
ELRRVNVTQMNVTKPLLQYERFSSWRKIVRVIAWIHIFFKNFKASRKSSS
KSKQLTSTQRLEIISSSPTYQPTLQQEESSEHQLVKLIQNEFFPDVMKQI
QEGRQLKGSLKKLDVFLDDQGVMRVGGRLKYGDFPYASKHQIVLPAKQPV
VILLGRKFHNQFHHVGKEHMLSLLRQRYWIIGGRAMCRQIIQSCI
Run BLAST on NCBI

transcript from alignment at scaffold_242:1784604..1785340

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054503 ID=TCONS_00054503|Name=TCONS_00054503|organism=Clytia hemisphaerica|type=transcript|length=737bp|location=Sequence derived from alignment at scaffold_242:1784604..1785340 (Clytia hemisphaerica)
TGATGCATGATTGTATGATCTGTCTACACATGGCTCTTCCACCGATAATC
CAGTAACGCTGCCGAAGGAGTGACAACATGTGCTCTTTTCCGACATGGTG
GAATTGGTTGTGAAACTTTCTGCCCAGTAAGATGACGACAGGTTGTTTGG
CTGGTAGGACGATTTGATGTTTGGATGCATAGGGAAAGTCTCCATACTTT
AATCTACCACCGACACGCATAACTCCTTGATCATCTAGGAACACATCAAG
TTTCTTTAGAGAACCTTTCAGTTGACGTCCTTCTTGGATTTGCTTCATTA
CATCTGGGAAGAATTCGTTTTGGATGAGTTTGACAAGCTGGTGCTCACTT
GACTCTTCTTGTTGTAGAGTTGGTTGATAAGTTGGACTTGATGAGATGAT
TTCTAGTCTTTGCGTGGATGTCAGTTGCTTGGATTTGCTCGACGATTTTC
GACTTGCCTTGAAATTCTTGAAGAAGATGTGTATCCATGCAATGACACGG
ACGATTTTTCGCCAAGAGGAGAATCTCTCGTATTGTAGAAGAGGTTTGGT
TACGTTCATTTGCGTGACGTTTACCCTTCGAAGTTCAATGTAGTTTTCAT
CTAAGGGAATCTTCGGGATTGATGGCCATTCCGATTCAGGTAGCCTAAGG
TACGCTGGACCGTTGAGCCATACATCGTCTTCTACTGCTTTCAACCCTTC
CTCTCTTGTAGCTAAGTCTGATGGGTTGGTCTTTCCG

Coding sequence (CDS) from alignment at scaffold_242:1784604..1785340

>TCONS_00054503 ID=TCONS_00054503|Name=TCONS_00054503|organism=Clytia hemisphaerica|type=CDS|length=735bp|location=Sequence derived from alignment at scaffold_242:1784604..1785340 (Clytia hemisphaerica)
GATGCATGATTGTATGATCTGTCTACACATGGCTCTTCCACCGATAATCC
AGTAACGCTGCCGAAGGAGTGACAACATGTGCTCTTTTCCGACATGGTGG
AATTGGTTGTGAAACTTTCTGCCCAGTAAGATGACGACAGGTTGTTTGGC
TGGTAGGACGATTTGATGTTTGGATGCATAGGGAAAGTCTCCATACTTTA
ATCTACCACCGACACGCATAACTCCTTGATCATCTAGGAACACATCAAGT
TTCTTTAGAGAACCTTTCAGTTGACGTCCTTCTTGGATTTGCTTCATTAC
ATCTGGGAAGAATTCGTTTTGGATGAGTTTGACAAGCTGGTGCTCACTTG
ACTCTTCTTGTTGTAGAGTTGGTTGATAAGTTGGACTTGATGAGATGATT
TCTAGTCTTTGCGTGGATGTCAGTTGCTTGGATTTGCTCGACGATTTTCG
ACTTGCCTTGAAATTCTTGAAGAAGATGTGTATCCATGCAATGACACGGA
CGATTTTTCGCCAAGAGGAGAATCTCTCGTATTGTAGAAGAGGTTTGGTT
ACGTTCATTTGCGTGACGTTTACCCTTCGAAGTTCAATGTAGTTTTCATC
TAAGGGAATCTTCGGGATTGATGGCCATTCCGATTCAGGTAGCCTAAGGT
ACGCTGGACCGTTGAGCCATACATCGTCTTCTACTGCTTTCAACCCTTCC
TCTCTTGTAGCTAAGTCTGATGGGTTGGTCTTTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034366XLOC_034366Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054503-proteinTCONS_00054503-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054503-exon-scaffold_242-1491911889:1784604..1785340TCONS_00054503-exon-scaffold_242-1491911889:1784604..1785340Clytia hemisphaericaexon
TCONS_00054503-exon-scaffold_242-1510915933:1784604..1785340TCONS_00054503-exon-scaffold_242-1510915933:1784604..1785340Clytia hemisphaericaexon
TCONS_00054503-exon-scaffold_242-1575043694:1784604..1785340TCONS_00054503-exon-scaffold_242-1575043694:1784604..1785340Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_242supercontigscaffold_242:1784604..1785340 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.27666	1.90018	1.52158	2.75396	0.271839	0.57283	0.431934	1.29399	0.396354	0.841626	1.3615	0.671249	0.223439	0.371269	0.915702	1.14647	1.4628	0.413606	1.78568	1.79385	0.519726	0.665448	0.308167	0.910549	0.504993	0.386309	1.01348	1.47493	2.38652	2.20353
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054503 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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