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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054509 ID=TCONS_00054509|Name=TCONS_00054509|organism=Clytia hemisphaerica|type=transcript|length=3766bpRun BLAST on NCBI protein sequence of TCONS_00054509-protein >TCONS_00054509-protein ID=TCONS_00054509-protein|Name=TCONS_00054509-protein|organism=Clytia hemisphaerica|type=polypeptide|length=794bp MAATKTKFGVVKTILLITILIVIVQIITVSFITSQDNFEERARRDHTKIHRun BLAST on NCBI transcript from alignment at scaffold_243:20503..38512+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00054509 ID=TCONS_00054509|Name=TCONS_00054509|organism=Clytia hemisphaerica|type=transcript|length=18010bp|location=Sequence derived from alignment at scaffold_243:20503..38512+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_243:20503..38512+ >TCONS_00054509 ID=TCONS_00054509|Name=TCONS_00054509|organism=Clytia hemisphaerica|type=CDS|length=23850bp|location=Sequence derived from alignment at scaffold_243:20503..38512+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00054509 vs. Swiss-Prot (Human)
Match: XYLT1 (Xylosyltransferase 1 OS=Homo sapiens GN=XYLT1 PE=1 SV=1) HSP 1 Score: 630.172 bits (1624), Expect = 0.000e+0 Identity = 322/726 (44.35%), Postives = 438/726 (60.33%), Query Frame = 3
Query: 396 TMTTEPVRCDVKHKDAKSALSRVKSEQCKNELYQTICAAQEKTLFWKNITRMCQVPAGKRPAHSIQ---SKMGYGP--PIRILYAMVVHGRAFRQVKRLFKALYHKNHYFYIHVDSRSDYLYEELKTFVKRFDNVAVAPWRMATIWGGASLLQMLLRMMADVLRMADWKWDFFLNISAADYPVQHNEKLSAFLRSHRDENFLKPHGGKTERFVKKQGLSRIFYECDEHMWRLGDRDLPSNIDFDGGSDWICLNRKFVDYLVHSDDTLVNGMKHMYRYALLPAESFFHVVLRNSRYCTSFAKGNMRLANWKRKLGCRCQYKHIVDWCGCSPNDFKPEDLVRL-QSQTINHFARKFEPIVNQEIINLLDEWLFGKPETPLIARNVYWENVYHSRHDNGSKFDMILTALQSFSRIASKEQTV-------NDCEFFPIWRPEQATLYMSNDTFHGVLSQQEYKVIAGRTLRETISVETFFQPIRFLEMRNRNMSEPAN--RLQSLAVGTSWDQKERIFRNIAGIIGPRDEPVLVHRWVHGPEFHVRIVWQDPLNVIAGMYQMKVDKTWVISFHKPKFNKPLRPGTWTVKIVFNDDITLGLTKFLVIPQNYYDGKEGVLNDVIATNNGPPAGLYASDYVVEFDRAAN--DTSERVVEFAKNSKSIGSSLEGWIDSIMQQHWKFVGICVSSERTGVKNKCIAQLPSCSDTDWSSKSPDPKSEVKRIEPNGYL 2522
T +P +CD+ K+A SALSR KS+ C+ E+ +T C + L + +TR C P + ++Q + Y P P+RI + +VVHGRA RQ++R+FKA+YHK+H++YIHVD RS+YL+ ++ +++ NV V PWRMATIWGGASLL L+ M D+L M DW WDFF+N+SAADYP++ N++L AFL +RD NFLK HG RF++KQGL R+F ECD HMWRLGDR +P I DGGSDW LNR+FV+Y+ S D LV MK Y Y LLPAESFFH VL NS +C + N+R+ NW RKLGC+CQYKHIVDWCGCSPNDFKP+D R Q+ FARKFE +VNQEII LD +L+G YWENVY S D+ LT SF+R+ + N C ++P+ P LY D F G L + +A L ++ET+ P + ++ S P++ RLQ VGT WD KER+FRN G++GP DEPV + +W GP V ++W DP+NVIA Y + ++ T + +KP N PLRPG WTVKI+ + + + TKFLV P + + + + + +NGP Y + + +V + +N+ S G++LEGW+DS++ W + IC TG + Q +CS T WSS SPDPKSE+ ++P+G L
Sbjct: 249 TKYDQPPKCDISGKEAISALSRAKSKHCRQEIGETYCRHKLGLLMPEKVTRFC--PLEGKANKNVQWDEDSVEYMPANPVRIAFVLVVHGRASRQLQRMFKAIYHKDHFYYIHVDKRSNYLHRQVLQVSRQYSNVRVTPWRMATIWGGASLLSTYLQSMRDLLEMTDWPWDFFINLSAADYPIRTNDQLVAFLSRYRDMNFLKSHGRDNARFIRKQGLDRLFLECDAHMWRLGDRRIPEGIAVDGGSDWFLLNRRFVEYVTFSTDDLVTKMKQFYSYTLLPAESFFHTVLENSPHCDTMVDNNLRITNWNRKLGCKCQYKHIVDWCGCSPNDFKPQDFHRFQQTARPTFFARKFEAVVNQEIIGQLDYYLYGNYPAGTPGLRSYWENVYDEPDGIHSLSDVTLTLYHSFARLGLRRAETSLHTDGENSCRYYPMGHPASVHLYFLADRFQGFLIKHHATNLAVSKLE---TLETWVMPKKVFKI----ASPPSDFGRLQFSEVGTDWDAKERLFRNFGGLLGPMDEPVGMQKWGKGPNVTVTVIWVDPVNVIAATYDILIESTAEFTHYKPPLNLPLRPGVWTVKILHH-WVPVAETKFLVAPLTFSNRQPIKPEEALKLHNGPLRNAYMEQSFQSLNPVLSLPINPAQVEQARRNAASTGTALEGWLDSLVGGMWTAMDICA----TGPTACPVMQ--TCSQTAWSSFSPDPKSELGAVKPDGRL 958 The following BLAST results are available for this feature:
BLAST of TCONS_00054509 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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