TCONS_00054517 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054517
Unique NameTCONS_00054517
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length711

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054517 ID=TCONS_00054517|Name=TCONS_00054517|organism=Clytia hemisphaerica|type=transcript|length=711bp
tcatattctacaccctaatacgcttccaaaaaggtatgaatgaacacctc
ttggcgagtgctattggtgtttaaaaattacggaAAATTTGGACAGGCCT
TAAAATGCCTGAGCTATTAATTTCGTTGATATAATCGTTCTTCCCGTAAA
GAAATCAAGGTGGGTCAAAGCTGGTTTGATTGGAATTTTCGATAAATGGC
TGCAAGCTGGTCTTGTTTCTCCTACACATACTAAACGTTCAAGTACAAAC
ATTACTTTCTCGTCATTGGAAGAGCTAGATGATACTACCGttacaaaaca
aaaagagGATATTGTACCACTTGATCAAACCTGTGATCATAATGTTAAAA
GACAAATTCTTCAAGTCATCGAGGATAGCTCGTTATTCAATCACTCCCAC
ATCGATGCAGCAGTAAAgaaTCTGCAACAATTCAGGACTAGACACTTCGG
ATACGAGCTCCGAGACACATCAGAACGACATTATAATGTGACAATCGATG
GAAAAACATACGATTTTGATGatgtttggaaaattttgcgcgaaaagaat
ttcaagaaattcgaagaaattttCCAACAAAATCCGAACATCGTCAACTC
GTTGCGTGATGGTGGTTTTCGTGGTGGTGgttttggtggtggttcgacaC
TTCTCATGAAGGCTGTTTATGAAGATCGTTTCGACGTTTTCGTTCACTTG
ATGGAATATCC
Run BLAST on NCBI

transcript from alignment at scaffold_243:165666..174382+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054517 ID=TCONS_00054517|Name=TCONS_00054517|organism=Clytia hemisphaerica|type=transcript|length=8717bp|location=Sequence derived from alignment at scaffold_243:165666..174382+ (Clytia hemisphaerica)
tcatattctacaccctaatacgcttccaaaaaggtatgaatgaacacctc
ttggcgagtgctattggtgtttaaaaattacggaAAATTTGGACAGGCCT
TAAAATGCCTGAGCTATTAATTTCGTTGATATAATCGTTCTTCCCGTAAA
GAAATCAAGGTGGGTCAAAGCTGGTTTGATTGGAATTTTCGATAAATGGC
TGCAAGCTGGTCTTGTTTCTCCTACACATACTAAACGTTCAAGTACAAAC
ATTACTTTCTCGTCATTGGAAGAGCTAGATGATACTACCGttacaaaaca
aaaagaggTAAGTAACAGATTTGAGAttaccaaaaaattgttttattaaa
tGAAACGCGCATGCGTTGATATCTTTCGTTTGATAGATGgtaaaacggtt
ttttttgttgttttgtaacGGCAGGATATTGTACCACTTGATCAAACCTG
TGATCATAATGTTAAAAGACAAATTCTTCAAGTCATCGAGGATAGCTCGT
TATTCAATCACTCCCACATCGATGCAGCAGTAAAGTAAGTAGAATTTATT
GTATATCGGTACTTCATATACAATATTCACAGTAACCCTTATAACATAAG
TTTTTTAGTATATTCTCGAAAGTTTATTACTTACAATATAACCTACACTA
AGTACGTAAAATCATTACTTCATAAAAAATCGAAGATACAGAGCACATAT
TGTGAGAATGATATTCTATCCCATATCATATTTTATCACCTGATAACATC
ACTGTAAATAACTAGTCTTGTGATACCAAACGGAAgcatatattttgaaa
acgcgttggtttttttttttttaattatcttttcttattttttcaggaaT
CTGCAACAATTCAGGACTAGGTATAtttccaatgaaataattttcaaact
gtCTTAAAGGTCGTGCCCTTTTTGCTAAGTATTTAAGGATATGTAACTAG
TTCAAACTCTACCTCCAGATTGTAGTTACCCGTTCAAGGCTTGTTAGGTA
ACGAAAGGCTCCTTTACCTTTTGATTGCCAGAAAGAGTATCGTTTATCCA
CTCAAgcatcatcatttttttctataGCGCAAAAACTAAACCTTACCTGT
CTTCATTAAAAAGACTGTTTAGATANACGAAAGGCTCCTTTACCTTTTGA
TTGCCAGAAAGAGTATTGTTTATCCACTCAAgcatcatcatttttttcta
taGCGCAAAAACTAAACCTTACCTGTCTTCATGAAAAAGACTGTTTAGAT
GTCGGTTATTTTTGGACGTACTGTATGGAGCGTTTTACACTCCGAGACTG
AACTCTGAACCCTGTTATTGAAGAGAACGTGGCGGATCGGGTTCGCATCG
TAAATGACGATGTATGTGCATGTAGGTGGTGGATAAATTAGTAACTAGTT
TCTTTAATGCCAGAATTACGCATCAAGGCTAACTGTGACATTACTGGTTG
CGCATCCTCGCAAATTGTCCCAAAATTAAAGAATACCATAGGCAAGCAAA
ATCTTAAGCAAACTCTTACCCGTCCCTAAGCATGTCGAGGGTAAAGATAA
GCAGGgaaggaaaaaatgaaaatgtaggaaaacacttttgaaaaattcca
tttCATCTTTCCTTGTTTTGCAGACACTTCGGATACGAGCTCCGAGACAC
ATCAGAACGACATTATAATGTGACAATCGATGGAAAAACATACGATTTTG
ATGGTAAgtttaaatttttggaaatgagCAACGCACTGTCAAAAATGCTG
TGTATATGTTAACGATGTACTTTTACTTTCTTGGGAAACGTTCATATTCT
TTTACTCTTGGATTCCAAATAAAccagggggttggaaattgtattATAAT
CAGGCTATTAAGAGAaaaataagggaccttctctttgaaacctataaata
ttcttaaaaattaaaaaaggggGGTGCTAATGAGGTCAGGGGGTttggaa
attttcgaaaaataattaAGCGGGGGGGTTTATTtggaacaaattaaaaa
aaacattttattcttCAGATTAACTTCTTGACGTCCCATCAgcgaaattt
ttttctcttaggACCGATATTTTCGGCTGCCGGTAGTTTTGATTTAGgac
tttattaaaaaatttgacacactgAAAAGATGGAGCTTTGAAAGATTCCA
ACGGTACTAAACATTAAGGCTTTAACTATCACCAAACCCTGCTATCACTA
AAGCCAAGATAATTCGATTTAAAGTTTAAgcattaaaaaatctttaaaat
gcgATTTTTTTGCTATTTGAGAACGGGAGTTAAGGAGTACTTAAGTTTAA
TGAGAACAATCCGAATCTTTTTTGGAAGAGTAATTTTCCAATGATGCCAA
AAATAGCTCATAACTCTTAGAATCGACCCACAATCAGGGGGTGCTAGAGT
TGGACaaatacaatcatggtcgtaatatttgaggaaaaagggaaatccac
cgggaagttttgaaaccacaatcgatttgtaagtgctctaaagtaggttg
gaggggtagagttttaactctgagttctaacatgagacttaacacttagg
accttaggatctgaggataggaccttaggatctgaggataggaccttagg
atctgaggatccaaaagttcaaaaatagtccaatagggctcataatatag
cctggtggtctataaacccgagccaaattgaaatatcctattaaatttaa
gagatggcccaaaatcgacttcctcgcccgaactccaaatttcgaaaaac
gaggaaatgaGTTTAgttctcaatagatttcgaccatgattgtagaaaga
aaaacttttctttttcaaaataaagcacGCACAAAGGGTTCAAGAACAAG
AACGAAATAGCTGcgaaaagtctttaaaaatatttttattcagcCAAAGC
CAATACAGTGTAGAATTTATGCCGGGGGTTACTAAGTACTGACTGACATG
CACCGCAAGGGTCGATTTTCTTTCACGCTAATTTACTCAAATTCtgaagt
aaccagtcattttcttgtcTGTAAGCTTTATTACACCGGATTTTTTAATc
atgctgaatgagatgcctttaatatgaatagatagaatttatcagttgga
aaaaattggaaagggcagttttagagatgaatctaatcaattattctttt
gtctttttgatgACAAAATGAATAATTTGGAACAGAAATAAGTGATCTGA
TGATTAAATACAAagcttttcaaaagaatttcagTTTTCATCGCTAATCA
TTATGACGCTGATAGTACAAAAGGATAGAATTGACACCCTTTTCAGGGCC
CCCCTTTTCAAGTTTCAAGAATGTCGAATTTTGCATTTTGCACGTGACTC
TAATTAATtatatgagacaggggtgagctaaCTTAATACAATATATTCAA
ATGATAAGGAgagaccattgagtttaaagcccgaagggctagagtagaat
ctctaacctttctcaagcaagagatagtgaaaccttaaaaaatgcgccgt
atttttgacgacagattgaatctagcaattcctttgtttacgattgatat
ttttttcgcaatttagcggtaaattttagtttcaatctgtcatttgtgta
aaaaccaggcgaaacgctcaaggccgcgcaactttcggatgagctggagt
ttttacaacgtCGGCCATGATTTTCGATGTGTATTTCACAGAGCGCAAAA
ACTGAATAAGTTGAGATATATTCTATCTGAAAAGAACATTCACCAaccga
attgaaatatatcaaatttctatcagaaaaaaaattttgtcccgaagtcc
cgaaatgTCAAACTtatgaaaagaaaattacaccaaacaaaagtcccgag
gtctcgaaagtcccgaattgaactatatcaaatttcaaagaagaaaaata
caCAAACCTAAAGTCTCCAGGTCCCGAaagtcccaaattgaaatatatca
aaattctaccagaaaaacaatttttacaccaacctaaagtcctgaggtcc
cgaagtcccgaaatatcaaacttatgaaaaaaaattacacaaacctaaag
tcccgaggtcccgaaagTCCCGAATTATAATATATCAAAATctaccagaa
aaaaaatttacaccaacctaaagtcccgaggtcccgaaagTCCCGAATTA
TAATATATCAAAATctaccagaaaaaaaatttacaccaaCCTAAAGCCTC
GAAGTCCCGAATGGAAATTTACCAAAGTATAGTCTGAAAAAAGTTACCCC
AATCAAAAATCCCAAGGTCTCAAAGTCCCGATGTAAATATGAAAACTCAA
GTAGAAAGAGGACCGGGGAAATGACTGATTGATTAAATTTGATTGGGCAG
GGGTGAGATTGATGAAATAGACAAGGGTGTAATTTCCACACAAAGTTGGG
GGAAACTCAAGTGGAAAGAGGGGAGAGTTTAGTGAATTTTACATAAAGAA
AGAttggaaatctatcaaaagaGGCGGGGTGAAAAAGGGGCGGAAACAAT
GAATGATAAATTGAATagagtgagacaggggtgagatTAATGAAATGGAc
aaggataaaatttttacataagGAAGGAAAACGGGTGGGGTGGAACTAGA
GTTGAAAAAGGACCGGAGAAAAAGAGTGATAGATTAGACGGGGGATCGGA
TTGTTGAATTAGGCAAGGGTGGGATGAAATTCAAGCAAAAAGAGGGGCTT
GGATAAATGATTGATGAAACACGAGATAAGTGTGAGATGACGCGTAAAGA
GAGGTCAGAGATATACATGAAGACAGGGGTGAGATAGATGCAAAGGGATA
AGGGAGGGTGAGAAAGGGGTGAGATGGATGTAAAGGGAGGTGGCAGTAAT
AGTATGAAAAGCGTAGGGGTAAAAATCAATTAAGACGAGACATGGGTGGA
AACTTTCGCTCtcagaaatttgatatatttcaattcgggacttcgggacc
tcgcgacttttggttggtgtaatttttttttctcagaaatttgatttatt
gaaattcggGACTTTGGACCTCGGGTGTTTaggttggtgtaatttttttt
ctcagaaatttgatacatttcaattcgggacttcgggacctcgggacttt
tggttagtgtaatattttttttcagaaagttgatgtgtttcaattcggga
cttcgggacttttggttggtgtaatatttttttccgaAAGTTGATGCATt
tgaattcgggacttcgggacttcgggacttcggtACCTAGgtatggtgtg
attttttttaaatagatttttgatattttgcatttcgggacttcgggact
ttggGTTGGAGTAATATtgtttttcagaaacttgatgtatttcaattcgg
gacttcaggacttaggtatggtgtgattttttttaatagattttcgatat
attgcaattcgggacttcgggacctcgggactttgggttggtgtaatatt
ttttttcagatagttgatgtatttcaattcgggacttcgggacttgagta
tggtgtaatttttttaaatagattttcgatattttgcaattcgggacttc
gggacctcgggacttttgattagtataatattttttttcagaaactcgat
ttattgaaattcgggacttcgggaccttgggacttttggttggtgtaaat
tttttttgatagaattttgtcatacttcaattcgggacttcgggacctcg
ggacttttgatTGGTGtactttttttctcagaaatttgatttattgaaat
ttgGGACTTCAGcacctcgggacttttggttggtgtaattttttttctca
gaaatttgattcattgaaattcgggacttcgggaccttgGGACTTGAGTA
tggtgtaaattttttaaatagattttcgatattttgcaattcgggacttc
aggacctcgggacttttgattagtgtaatatttttttcagaaattcaatt
tattgaaattcgggACTTTGGGACCTTgggacttttggttggtgtaaatt
tttttgatagaattttgacatacttcaattcgggacttcgggacctcggg
acttacttttggttggtgtaatattttttttaagaaagttgatgtatttc
aatttgTGACTTAGGGACTTCGGGACTTGAGTATGGtgtaatattttgta
aatagattttcgatattCTGAATTTCGGGactttgggttggtgtaatatt
tcttttcagaaagttgatgtatttcaattcgagacttcgggacttaggga
tggtgtgattttttaaaatagattttcgatATATTGCAAttcttcgggac
ttcgggacctcgggacttttgattagtgaaatatttttttttcagaaagt
tgatgtattttaattcgggacttcgggacttaggtATAGTGTGGTTTTTT
AAacagattttcgatattttgcaattcggggcttcgggacctcgggactt
ttgattagtgtaatatttttttcagaaattcgaTTTATTGAAATTCGGGA
CTTCGAGACCTTgggacttttggttggtgtaaatttttcttaatggaatt
ttgacatacttcaattcgggacttcgggacctcgggacttttggttagtg
taatattttttttaagatagttgatgtatttcaatttgggacttCGGGAC
TGAGTATGGTGTAATtgtttttttgatagaatttcgaTATATTCAGTATT
TCAATGATTGTAACTTTGTAATTTTAAACATTACAGTAAGAAAGGATGAA
TTGGTGCTGTTCTGCAAAATTCAGCATTTCTCCAGCTTGTCCCGcaattt
tggtaggatttgttgacttcaaatcctaccaaagagattgacttctagcc
cttcgggcttatacttcattgggagAGACACTCTCCCGAAGGGGGGGGGg
ccactcatatggtccgatcCACGGCATGTGTTTTTTTTGAGACTCTCGAA
ATGCAAAGTGTGTACTTTTGATATAGTGCATTATAAGgatcttcttttag
ctggaaaCAATGTAAGTGCGTTTGTGTTTGGGACTGCTGAATCGCAGGTC
TGACAGTGAAATTTTTGAATCGCTGCTATTTTCATTCGTTTtcccctccc
cccccccgtaaaaggaagaaaatctttttacgATATGGGAGGTCTCTAAA
AAGTATCAAATGAAATTGACAGGAGTTGTCAATTTTNttttttttcttct
ttttttctttctttttgcccATTCCctccttcccccccccccccccgtaa
aaggaagaaaatttctttacGATATGGGAGGTCTCTAAAAAGCATCAAAT
GAAATTGACAGGAATTTTATCCCCGAGGGAGTTTCTTAATCATATAAAGA
GATTTCTCTGGTGCGTTTTTCATTCATTTGTTATTTAATTCATTGGGGCT
TGTTGAGTGGTTGTTTGTGTACGCATAGAAAGTTAATATTATTTTTGGAA
TGTTGAATAATATTTTATCAGGTAAAATAATTTATTATACAGTAGAAAGA
ATTTCTTTGTCAGAATAATTTCTGTAGACATGTTGAAAATGCTTGTTTTC
TCTGAGAAATGATTTCTCAAAGTCTGAGAAGCGACTTAGATATTCATCTA
AAGTTTACCTTTTTACCCGAATTTAAATAGTTTTTTGAATTTCCCTCTTG
GAAAAAAGCCATTGGGATAGTGGGTGCCTTTTACAAACAAAAACTAAACG
GTACCTTTCTCGTTTTTTCCTTCAAACTTTTAAGTCCAAAAGAAAAGTGA
CGGAATTAAATTTTTcggttttaaaggttttgccCTTTTCGTTGAAATTA
ATACCATAAATCTGAAAAGATCTTAATTTTGTTGCCCGAAATTTAACTTA
CAATAGTGGGATtggagtttgttttttttttaattttttttttttttgta
ttctcAGCgtagaaattttttgttcatcaaaaatatCTTCAGCCCGAATA
AATAAagtcttttcttttcaaactaAATGGAAATTCTAATTCCAAAATTT
CAACTTCAAACAATTCTTCGCTCGGAAGatatcgaaattcaattttattt
ttcacggAGGAGATTTTTCCCGTTATAAGTAAAATGATTTTTCACTGAGC
AAAAAGTTTTCgtccaaattttaaaaactttttgccATCAACNCGTTATA
AGTAAAATGATTTTTCACCgagcaaaaagttttttactatattttaaaaa
ctttttgccatcaattcggaaatatttttgttgttcagattggaaaattt
cagctttaaagtatttttagttcttgagatatcgaggttaaattcttttt
taagtGGAAATATTCTACCGTCaagaatgaaaatgatttcttgctgagca
aaaagttttccttcaaaattcaaaattttttcgccATCAATTCGGAAATA
TTTTCTTCGTTctgtttgcaaaatttcagcttcaaagtatttttagttCT
TAAGATATTGAggttcattttttttgaaagttttttttacctcgggaaaa
gtttgaatttcttcattttttcttcagatgtttggaaaattttgcgcgaa
aagaatttcaagaaattcgaagaaattttCCAACAAAATCCGAACATCGT
CAACTCGTTGCGTGATGGTGGTTTTCGTGGTGGTGgttttggtggtggtt
cgacaCTTCTCATGAAGGCTGTTTATGAAGATCGTTTCGACGTTTTCGTT
CACTTGATGGAATATCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034374XLOC_034374Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054517-exon-scaffold_243-1491911889:165666..165972TCONS_00054517-exon-scaffold_243-1491911889:165666..165972Clytia hemisphaericaexon
TCONS_00054517-exon-scaffold_243-1510915933:165666..165972TCONS_00054517-exon-scaffold_243-1510915933:165666..165972Clytia hemisphaericaexon
TCONS_00054517-exon-scaffold_243-1575043694:165666..165972TCONS_00054517-exon-scaffold_243-1575043694:165666..165972Clytia hemisphaericaexon
TCONS_00054517-exon-scaffold_243-1491911889:166090..166199TCONS_00054517-exon-scaffold_243-1491911889:166090..166199Clytia hemisphaericaexon
TCONS_00054517-exon-scaffold_243-1510915933:166090..166199TCONS_00054517-exon-scaffold_243-1510915933:166090..166199Clytia hemisphaericaexon
TCONS_00054517-exon-scaffold_243-1575043694:166090..166199TCONS_00054517-exon-scaffold_243-1575043694:166090..166199Clytia hemisphaericaexon
TCONS_00054517-exon-scaffold_243-1491911889:166512..166535TCONS_00054517-exon-scaffold_243-1491911889:166512..166535Clytia hemisphaericaexon
TCONS_00054517-exon-scaffold_243-1510915933:166512..166535TCONS_00054517-exon-scaffold_243-1510915933:166512..166535Clytia hemisphaericaexon
TCONS_00054517-exon-scaffold_243-1575043694:166512..166535TCONS_00054517-exon-scaffold_243-1575043694:166512..166535Clytia hemisphaericaexon
TCONS_00054517-exon-scaffold_243-1491911889:167289..167368TCONS_00054517-exon-scaffold_243-1491911889:167289..167368Clytia hemisphaericaexon
TCONS_00054517-exon-scaffold_243-1510915933:167289..167368TCONS_00054517-exon-scaffold_243-1510915933:167289..167368Clytia hemisphaericaexon
TCONS_00054517-exon-scaffold_243-1575043694:167289..167368TCONS_00054517-exon-scaffold_243-1575043694:167289..167368Clytia hemisphaericaexon
TCONS_00054517-exon-scaffold_243-1491911889:174193..174382TCONS_00054517-exon-scaffold_243-1491911889:174193..174382Clytia hemisphaericaexon
TCONS_00054517-exon-scaffold_243-1510915933:174193..174382TCONS_00054517-exon-scaffold_243-1510915933:174193..174382Clytia hemisphaericaexon
TCONS_00054517-exon-scaffold_243-1575043694:174193..174382TCONS_00054517-exon-scaffold_243-1575043694:174193..174382Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_243supercontigscaffold_243:165666..174382 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.145275	0.692393	0.142439	0.301632	0.835769	0.165135	0.857919	1.24272	0.323199	2.31146	2.78116	2.40293	7.9765	4.80079	13.824	13.5432	7.07788	6.94691	9.44322	8.59389	2.89846	4.30978	3.74209	1.84045	8.59979	5.77155	11.2799	8.28429	10.7257	8.1258
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054517 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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