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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054525 ID=TCONS_00054525|Name=TCONS_00054525|organism=Clytia hemisphaerica|type=transcript|length=493bp
ACTTTTATCTCGTCATTCTAAGGTCATATAATTTATATCTCACTTTTAAA
AGCTTCCTTCGATCAAATGGAAGACACTTTGAGAGTtttcgttgttgttg
tttgtttatttttggAATGCAATGGATCATACTTCACAGAtctcatttca
actttttcactgGACCCCAGTAATCCACCAACTGGAGCGAAAAAGGTTCC
TGGTCCTCCTGGTGGTAAAATAGAAGCTTTGAAATTCACACCAGATGCAC
CACCAATTTATCTATCAGGTCCTACTGCAGCTAACCTGATCACAACAGTG
CACAATTCAAAAGATTTGACATTTTATACTGAATTTATGATGCCAAGAGC
TTTAGATAAAGATGAGGTTTGGGAATTCTTCTCTCTGCAAGGAGGATCTC
AAGAAATTTTGTTTNTTTTAAGTCCTACAGTAATGGGTTTCAGATTTGAA
CTTTTTGCTGGAAGTTGCAGAGGAATCTTTTAAtcaaaattcc Run BLAST on NCBI protein sequence of TCONS_00054525-protein >TCONS_00054525-protein ID=TCONS_00054525-protein|Name=TCONS_00054525-protein|organism=Clytia hemisphaerica|type=polypeptide|length=138bp
MEDTLRVFVVVVCLFLECNGSYFTDLISTFSLDPSNPPTGAKKVPGPPGG
KIEALKFTPDAPPIYLSGPTAANLITTVHNSKDLTFYTEFMMPRALDKDE
VWEFFSLQGGSQEILFXLSPTVMGFRFELFAGSCRGIF Run BLAST on NCBI transcript from alignment at scaffold_243:255697..258583+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054525 ID=TCONS_00054525|Name=TCONS_00054525|organism=Clytia hemisphaerica|type=transcript|length=2887bp|location=Sequence derived from alignment at scaffold_243:255697..258583+ (Clytia hemisphaerica)
ACTTTTATCTCGTCATTCTAAGGTCATATAATTTATATCTCACTTTTAAA
AGCTTCCTTCGATCAAATGGAAGACACTTTGAGAGTtttcgttgttgttg
tttgtttatttttgggtAAGCTCTTTATGGTTTCATTTTAGAgtttataa
ataaaaacgaGTTGCTAGCTAaaataacaatatttttttcaatgttcaTA
ATAAAACTTTAGTTAGTAGATTGACCTTGTGTTGACTTTTTTCATCAACT
GGATGATgacacctctgtctcacagccccagtggaactttttcccaaacG
GGGATAAAACTTTCTATCGATATCCTAAtgaatggggatagaaattatat
tgttacAAGCtataaaaaaatccagtggggattaTTTTGGGAAACAGTTT
TTTACATTGAAATTTAATTGGTGGGAATGAAGTCTTGTCTGAAAtatagg
gtattttttccatcAGGAACCAAATGTTGACCAAATTTCCCAGTGAAGGG
GGTCCCATAGGATCAGCAACATATTGGTGTATACAGttgactttttaaaa
tttgatcttcaagggaccaagattATTCTTGGAATTATGAATGAATTCCG
GTTACAGATTTTATACGNtttttaaaatttgatcttcaagggaccaagat
tATTCTTGGAATTATGAATAAATTCGGGTTACAGATTTTATACGACTTTC
CAAGTCGAGGAGGACCaggctttttttattttagattaaagttggatttg
aataatagaggttcaaattagagagagttgattgTGATTAGGCTATTTCA
AAGGATTCGTGCATCtgttatacatattttttctattcaatttagaGGAG
CGAATGCAAATATCTGAGCAGATTTCCGTTCGAGAAAGACGTTGAAAAAA
TAGACTTTTTGTCATTATTTAATTGACTGTAGAATTCAAAAACtcttttc
cattgtttttgccTTTGTAAAACTTAATTAATTTCATTCGCAAATAAGGA
CTCAGCCACAAAAAGTTGATTACCACAGTGACGTAGAAAAATCATGTAct
acgaatcctatgaaataggcttaTGGCAAACAATCTTCGTGAAAGATTGT
TGTTGTACGTCTTATGGCACTTCTACACTACTCTCTATGGAGAGCCGTTT
GTAGAAATATTCATtcgattatttttttgattaaattcaatattttcatt
tggtaaattcaattatcattcggtaaattcaattctcatttggtaaattc
aattctcattcggtaaattcaataTTATCATTCGGTAAATGCAATTTgca
ttcggtaaattcaattattattcggtaaattcaattatcattcggtaaat
tttattatcattcaaaataaattctattttcattcggtaaattctttatt
attattatcaatcaaattctatttttattCGGTAAAATCTATTTTCATTC
GGTAAATTCTATTCTCATTCTGTAAATTCAATTGATGGAGATTCATCGAT
CATCATGTCTCGGTGCAGAGCGTGTCTTGCCGTCTCTACGTCATAGCCAT
CTCCTTTTTGGAGAAAGAACGACATTTTAATCCGTCTGATTCGTGCGTAT
CCAACACGAAGTCATGGCTTATAAAACCAGAAAAGTTTGTTCAACActga
caaaataacacaaacATCACCGCACTGTATGGGattcaaactctcaaaac
agATCACCGCCTGTACTTCAaaccatcgccttaaccactcagCCACCCTT
ACTTACTACATCCATAAATTTGATTACATAAATATTCCTTATTTTCATCT
GGGATGATTAAGACACTTTCCAATCTTCTTAAAGTCTCAAGAGAGGAGAA
TCTTGTTCTTGCGATGGACACAGCATACATGCGCGGGCGATTAAATATGA
TCGCGTGGGATGCGTGTCAAAAAATTCTCGTGAGCAATCTGGGTATTCAT
CAAAAAGTGCACATTTTGTTTTCCCTTTTACCCTACCCACCCGTTGCATC
ATGGGGGATATTACTACGTGttaaaaaagtcacaaaaacgTCGGTTTTAT
CTGTTGCGATTCTAACCCACATGAAAAATGACGTGTTGCCTTTAAAAGTA
ATGGTtgaataaattaataaaataaaatattgaatttcttgCAGAATGAG
ATTAAACTTCTATCAAACcaaatgaaagaaatcaaatgaaaactttgaaa
tgaatgtaaaatgaatttaccgaatgagaattgaatttaccgaatgatga
ttgaatttaccgaatgataattgaatttacCAAATGCAAATTGCATTTAC
CGAATGATAATATTAAATTTACCGAATGAgaattgaatttaccgaataat
aatattgaatttaccgaatgataatattgaatttaccgaatgataattga
atttaccgaatgataatgttaaattttatcaaaaaaataatcgAGTGAAT
ATTTCTACAAACAGCTCTCCATAACTCTCCAcgtatgaatatttttttct
ctataCCAGAATGCAATGGATCATACTTCACAGAtctcatttcaactttt
tcactgGACCCCAGTAATCCACCAACTGGAGCGAAAAAGGTTCCTGGTCC
TCCTGGTGGTAAAATAGAAGCTTTGAAATTCACACCAGATGCACCACCAA
TTTATCTATCAGGTCCTACTGCAGCTAACCTGATCACAACAGTGCACAAT
TCAAAAGATTTGACATTTTATACTGAATTTATGATGCCAAGAGCTTTAGA
TAAAGATGAGGTTTGGGAATTCTTCTCTCTGCAAGGAGGATCTCAAGAAA
TTTTGTTTNTTTTAAGTCCTACAGTAATGGGTTTCAGATTTGAACTTTTT
GCTGGAAGTTGCAGAGGAATCTTTTAAtcaaaattcc Coding sequence (CDS) from alignment at scaffold_243:255697..258583+ >TCONS_00054525 ID=TCONS_00054525|Name=TCONS_00054525|organism=Clytia hemisphaerica|type=CDS|length=834bp|location=Sequence derived from alignment at scaffold_243:255697..258583+ (Clytia hemisphaerica)
ATGGAAGACACTTTGAGAGTtttcgttgttgttgtttgtttatttttggA
ATGCAATGGATCATACTTCACAGAtctcatttcaactttttcactgGACC
CCAGTAATCCACCAACTGGAGCGAAAAAGGTTCCTGGTCCTCCTGGTGGT
AAAATAGAAGCTTTGAAATTCACACCAGATGCACCACCAATTTATCTATC
AGGTCCTACTGCAGCTAACCTGATCACAACAGTGCACAATTCAAAAGATT
TGACATTTTATACTGAATTTATGATGCCAAGAGCTTTAGATAAAGATGAG
GTTTGGGAATTCTTCTCTCTGCAAGGAGGATCTCAAGAAATTTTGTTTNT
TTTAAGTCCTACAGTAATGGGTTTCAGATTTGAACTTTTTGCTGGAAGTT
GCAGAGGAATCTTTTAAATGGAAGACACTTTGAGAGTtttcgttgttgtt
gtttgtttatttttggAATGCAATGGATCATACTTCACAGAtctcatttc
aactttttcactgGACCCCAGTAATCCACCAACTGGAGCGAAAAAGGTTC
CTGGTCCTCCTGGTGGTAAAATAGAAGCTTTGAAATTCACACCAGATGCA
CCACCAATTTATCTATCAGGTCCTACTGCAGCTAACCTGATCACAACAGT
GCACAATTCAAAAGATTTGACATTTTATACTGAATTTATGATGCCAAGAG
CTTTAGATAAAGATGAGGTTTGGGAATTCTTCTCTCTGCAAGGAGGATCT
CAAGAAATTTTGTTTNTTTTAAGTCCTACAGTAATGGGTTTCAGATTTGA
ACTTTTTGCTGGAAGTTGCAGAGGAATCTTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054525-exon-scaffold_243-1491911889:255697..255811 | TCONS_00054525-exon-scaffold_243-1491911889:255697..255811 | Clytia hemisphaerica | exon |
| TCONS_00054525-exon-scaffold_243-1510915933:255697..255811 | TCONS_00054525-exon-scaffold_243-1510915933:255697..255811 | Clytia hemisphaerica | exon |
| TCONS_00054525-exon-scaffold_243-1575043694:255697..255811 | TCONS_00054525-exon-scaffold_243-1575043694:255697..255811 | Clytia hemisphaerica | exon |
| TCONS_00054525-exon-scaffold_243-1491911889:258206..258583 | TCONS_00054525-exon-scaffold_243-1491911889:258206..258583 | Clytia hemisphaerica | exon |
| TCONS_00054525-exon-scaffold_243-1510915933:258206..258583 | TCONS_00054525-exon-scaffold_243-1510915933:258206..258583 | Clytia hemisphaerica | exon |
| TCONS_00054525-exon-scaffold_243-1575043694:258206..258583 | TCONS_00054525-exon-scaffold_243-1575043694:258206..258583 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_243 | supercontig | scaffold_243:255697..258583 + |
Blast
The following BLAST results are available for this feature:
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