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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054573 ID=TCONS_00054573|Name=TCONS_00054573|organism=Clytia hemisphaerica|type=transcript|length=4129bp
GAACTTTTGGTCTTGCTGTTTGAATAGTATCCAGTTATCAAATGGCTGAC
TCAAGGTAGACTGAAAGCTGAGTTGAAGTTTTCTCGTGTTTCCATCCTCC
AAATCATAAAATGTATTTTCTGGCACCACGAAATCCATccatctacacat
actaattgaAATCGTTTCTAGTTCAAATTTGAGAATAGGTGGATTCACAG
CATCTTCGCTACAAGGAAGATCATATTCACTAGCAACAtataaaatatca
tatttcggTAATAGCAATGTTTTGAGTACTTCATTCGGACGGTTTTCCTC
ACCTAACTTCGTAAAGATTTGATTCGATGCTGCCCAATGGCAAGGGATAA
AAGTCATTGtacaattaaaaaatataaacttcTCTTTTGTTATACTTTTG
ACCCCAATGTCTTTGTGACTACCATTTAAGAATTGTGCTATTTTTACTGA
tagttcgaaattttttttcatctcgCTCGTTTCTAGTGTTGTCATACCAA
CCACATAGAAAAACTTTGGTTCGTTGATCTCCTCGAATATAATAACTAGT
TCAACTTTTGATGTTAGACCAGTTTTATCACGAGCTGTTAAAATGAGTTT
CTTCTTCTCTTGATTGAAAAGAGTAGCTTCGAACAAGGTTGGATACCCTG
TCAGTGTTTGTTTTGTTACATCATATGCCATCCAGTTGTATACAATGTTG
ACTTCACTGTCTGTATCTGTTGTCAGAAAAACATCAAGACTTCTCGTATT
TCCATCTTCTGTGTCTGTAAACTGGTCCTCTGGAATCTGATACACAAATC
CTCCACAAATCGGTAAATGAACTTCTAAAGGGTTGTCTTTTGAAGTTGGA
GGGTTAATATCTGTTTTACAAACATCTGCGATATTGAGACCCATCTCCAA
TACGTCGAATTCTGACAAAGCGTCACTGAAGTCTTGGACTGGTTGGTTTT
CTCCTTGTATGATgttacttttcaaaatttgaagagcAGCTTCGTTAATG
CAAGATGTCACCATTAGACAGTTTTGCCATCGAATCCTGTAAATGTCATT
ATTTGCTTCAAAACCTGAAATACTCATAGCTGCGTCGGAACCAAAGAATC
TGTTGATCCCGTcagaaaacttcattttgatATCAATTGGACTCGTGAGT
TGGCTATCTTTTAGTTTGATTTTACTTTCGAAGATATAAAAAGAGTTGAT
TTGAGCCCTTCTAACCGTAACTAGAACGTCACCATCGGCATGCATGTTGT
TTGAGTCGATTGCTCGAACACTGACATTGTATTTCAAGCTTTGTGTAGCC
GAGAAGATGTTTGTTGGGACGATGCCAATGAACTGGTGACTTGAAGAATC
TACTGAAATCCATGAGGACTCGGCGTTCACGAAATTGTTATCAATTTTTG
TCACCAAATAAGTCAATTTTACGTCTTCTTCATCCACGAATGATTTCGAG
TCAAAATTTCTTCGAAACGTTTTGCATGTTTCGATGGTGAATGGTTGAAA
TGGTTTGACGTATTCTGGTTTATTTTTTGGAATACACTCGTCTCCTAttc
ttactttttgaaaattttgaacttgCAACTGAACGCTCATTGATGATTTA
AGTGATTCGCTTGGTTGGCCATTTTCAATAGCTTTACTTTCAACTGCTTC
AATGACTTTCCTATCACAGGGAGAGAACTTTGCTTTGCATGTTGAAAATG
TAAAAGAAGTGAGCTTCCCAAAGGTGCTGTATTNTTTGCTTTGCATGTTG
AAAATGTAAAAGAAGTGAGCTTCCCAAAGGTGCTGTATTTATAGCCATAA
AAATCGTCTATATTCCATTCCAAGTATTCGGTCAACAGTTTTGATGTTTT
AACTAGATTATCCACTGTATCAAGCTGTTTAGGCCTAGCATATCTCATTT
TGAAGGTCACACTAAACGCTTTCTTGTTTTTAGTAATAAAGATTTTGAAT
GATGTTTCAGCAAATTTCATTCCTGCATTTTCTGCtgttattttcaatga
aacCACACTTGGCAAGTTCTCATTGTTTTTATCCACCAAAATTCCATAGA
TCGTCTGCTCCTCTTCATTGAATTGAATGAAGAAAGTGTCCGGAATCTGC
TCACCATTCTCCAAAGTCATCTTTAGTTGCAAAGCCCTTGTGTTTCCGTC
ATTTGAATCTTTGAATGTGCTTTCTGGAATCTGATAAATCAACGGTCCAC
AAAACCCAAGGTTTTGGTCGGGAATCGGATTTTCAACAAATGGTGGGTCA
ACATCACAAACAccaaataatttgaaagatGAAGCCAGAATAAAAAAGTC
TGTTTGGAACGATTGTCTGAATTCATCTTTAATCGCATCTCCATCGAACA
CATGTGATTTGAGACGttctattttttcatttttgcattcATCTCTTGTT
ATTGTACAGTTGGACCATTCAATAATGTGCACAGAATCTTTCCCATAACC
AGATGAtactttttcagttttgaaaatttgaaaagtattaTCGGTTTCTC
TGTCACCAAAAAATTCTTTGAACCTTCGACGAACGAAACTGTACAGCTCT
ACATAATTTTGAAAGTCATTTTTGAGAATTCTGAACTGAAATGTGAAGAT
ATGGGACGGCTCCTTCTCCTCTTTTTGAACTTGGACAATAAAAGAGTCGA
TAGCTTGATTTCCACCAATATCAGTggttttcaattcaaaattgtaGCTA
TTTAAATCACTTTCTGATGCAACAATTGCTATGATTTGAGTTGTCTCCTG
AAAATGTAACATTTCTGTTTGTCCGAATTGCAGTCCAGAAAAATGAATGG
AAACATCCAGATTCCTTGTATTTCCTTGTTCGACATCATTGAAGGTATTA
GCAGGAATGTTGAAAATAAACGTTGCACAAGTTGTAACTGACAAATCTTG
TAAAGGATTTGAGACTTCTGGTGGATTGTCCTTGTCACAGGGAGGTTTGA
TAACTTCTTCCACATTCAACACTTCAAATTCTGGTTTCAAATCAAGAAGT
GCGTTCAAGGATGTTGATGTGgctagaagtttgtttttgtaaaaatttaa
gTTAACAAAGTCACATTGAGGTGTCGACCATGTACAATTTCCGAACTTTA
TGACTTGATTCCCATCAGAAGAAGTTTGTGAGCTGACCATAGAAAATCCA
TTGTCGTTATCACCAAAATAGTTACCAACTTTAAAAGCTAATGCCAATCC
TGGACTATGGTTGAAGCTTGTTGACTCTGCCGTGAACTTGGTTGTTATGG
AGATACTGTAAGGGATTGTTTTTGAATCATCCGACACAATAAATTTAACG
ACAGTTTCTGTAGAAAGGTTTGATGAATCAGTGACTACTAATTTATATGT
GATTTCTCTCTGGAGTGGTGGATTGTATGTCGAAGGTAGCAATCCATAGA
TGATCTTAGTTGCGTCGTCGAATTGAATAATGTCAGTGCCTGTGAGCTTT
CTCCCTTGCTCATCTTGAAGTTGAACGTCAAGTTTTGACAAATCGCCGTC
TTCATCTTTAAAAGTATTATTTTCTATTCGATAAACTGTTACGCCACAGT
AAGAGAGGGTAATTGGACGAATTGGTCTGATTTGAACTGGAGGATTCAAA
GTACAGCTTGTCACGTTTTCTATAATTTTCTCGATGCGAAACTCTTCGTT
CATTTCATTGATCAGTTCTTGGGTtatgttttgattgtttccatCGACAA
ACATTTTTGTTCGCAGAAACTCGATCATAGGGAAATTGCAATAATCCAAC
AGTAAACTCCACTGGATCTCGGCATAACCATTTCTGCTTTGAAATTCTTT
GATAGTATAATAATTTATGTATATCAAGTCTTTGTATTCGGACCCAAACA
CTCTGTGTAATTTGGTGAGAAACAGCTGTATCTGTTTTGGAAAGATCCAA
TTAGAAATTTCATTTACGTACATATAAAAAGTAACCTTGTATTTGTTCAC
TGGTCGTGTACTTTTGCTCAAAATGAAAGCATAATTTGTGCCCATTAGAT
CTTCCAAAAACCTTGCATGCATTGAAATAATAACCTGTCCGTATAATCTA
CCCTCTACAGTTGGACTCGCTATAATTGGCGAGATGTCAAATTTTCCGTC
AAGTGGTCTTGATAAATACTCATAAAACG Run BLAST on NCBI transcript from alignment at scaffold_243:755284..759412+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054573 ID=TCONS_00054573|Name=TCONS_00054573|organism=Clytia hemisphaerica|type=transcript|length=4129bp|location=Sequence derived from alignment at scaffold_243:755284..759412+ (Clytia hemisphaerica)
GAACTTTTGGTCTTGCTGTTTGAATAGTATCCAGTTATCAAATGGCTGAC
TCAAGGTAGACTGAAAGCTGAGTTGAAGTTTTCTCGTGTTTCCATCCTCC
AAATCATAAAATGTATTTTCTGGCACCACGAAATCCATccatctacacat
actaattgaAATCGTTTCTAGTTCAAATTTGAGAATAGGTGGATTCACAG
CATCTTCGCTACAAGGAAGATCATATTCACTAGCAACAtataaaatatca
tatttcggTAATAGCAATGTTTTGAGTACTTCATTCGGACGGTTTTCCTC
ACCTAACTTCGTAAAGATTTGATTCGATGCTGCCCAATGGCAAGGGATAA
AAGTCATTGtacaattaaaaaatataaacttcTCTTTTGTTATACTTTTG
ACCCCAATGTCTTTGTGACTACCATTTAAGAATTGTGCTATTTTTACTGA
tagttcgaaattttttttcatctcgCTCGTTTCTAGTGTTGTCATACCAA
CCACATAGAAAAACTTTGGTTCGTTGATCTCCTCGAATATAATAACTAGT
TCAACTTTTGATGTTAGACCAGTTTTATCACGAGCTGTTAAAATGAGTTT
CTTCTTCTCTTGATTGAAAAGAGTAGCTTCGAACAAGGTTGGATACCCTG
TCAGTGTTTGTTTTGTTACATCATATGCCATCCAGTTGTATACAATGTTG
ACTTCACTGTCTGTATCTGTTGTCAGAAAAACATCAAGACTTCTCGTATT
TCCATCTTCTGTGTCTGTAAACTGGTCCTCTGGAATCTGATACACAAATC
CTCCACAAATCGGTAAATGAACTTCTAAAGGGTTGTCTTTTGAAGTTGGA
GGGTTAATATCTGTTTTACAAACATCTGCGATATTGAGACCCATCTCCAA
TACGTCGAATTCTGACAAAGCGTCACTGAAGTCTTGGACTGGTTGGTTTT
CTCCTTGTATGATgttacttttcaaaatttgaagagcAGCTTCGTTAATG
CAAGATGTCACCATTAGACAGTTTTGCCATCGAATCCTGTAAATGTCATT
ATTTGCTTCAAAACCTGAAATACTCATAGCTGCGTCGGAACCAAAGAATC
TGTTGATCCCGTcagaaaacttcattttgatATCAATTGGACTCGTGAGT
TGGCTATCTTTTAGTTTGATTTTACTTTCGAAGATATAAAAAGAGTTGAT
TTGAGCCCTTCTAACCGTAACTAGAACGTCACCATCGGCATGCATGTTGT
TTGAGTCGATTGCTCGAACACTGACATTGTATTTCAAGCTTTGTGTAGCC
GAGAAGATGTTTGTTGGGACGATGCCAATGAACTGGTGACTTGAAGAATC
TACTGAAATCCATGAGGACTCGGCGTTCACGAAATTGTTATCAATTTTTG
TCACCAAATAAGTCAATTTTACGTCTTCTTCATCCACGAATGATTTCGAG
TCAAAATTTCTTCGAAACGTTTTGCATGTTTCGATGGTGAATGGTTGAAA
TGGTTTGACGTATTCTGGTTTATTTTTTGGAATACACTCGTCTCCTAttc
ttactttttgaaaattttgaacttgCAACTGAACGCTCATTGATGATTTA
AGTGATTCGCTTGGTTGGCCATTTTCAATAGCTTTACTTTCAACTGCTTC
AATGACTTTCCTATCACAGGGAGAGAACTTTGCTTTGCATGTTGAAAATG
TAAAAGAAGTGAGCTTCCCAAAGGTGCTGTATTNTTTGCTTTGCATGTTG
AAAATGTAAAAGAAGTGAGCTTCCCAAAGGTGCTGTATTTATAGCCATAA
AAATCGTCTATATTCCATTCCAAGTATTCGGTCAACAGTTTTGATGTTTT
AACTAGATTATCCACTGTATCAAGCTGTTTAGGCCTAGCATATCTCATTT
TGAAGGTCACACTAAACGCTTTCTTGTTTTTAGTAATAAAGATTTTGAAT
GATGTTTCAGCAAATTTCATTCCTGCATTTTCTGCtgttattttcaatga
aacCACACTTGGCAAGTTCTCATTGTTTTTATCCACCAAAATTCCATAGA
TCGTCTGCTCCTCTTCATTGAATTGAATGAAGAAAGTGTCCGGAATCTGC
TCACCATTCTCCAAAGTCATCTTTAGTTGCAAAGCCCTTGTGTTTCCGTC
ATTTGAATCTTTGAATGTGCTTTCTGGAATCTGATAAATCAACGGTCCAC
AAAACCCAAGGTTTTGGTCGGGAATCGGATTTTCAACAAATGGTGGGTCA
ACATCACAAACAccaaataatttgaaagatGAAGCCAGAATAAAAAAGTC
TGTTTGGAACGATTGTCTGAATTCATCTTTAATCGCATCTCCATCGAACA
CATGTGATTTGAGACGttctattttttcatttttgcattcATCTCTTGTT
ATTGTACAGTTGGACCATTCAATAATGTGCACAGAATCTTTCCCATAACC
AGATGAtactttttcagttttgaaaatttgaaaagtattaTCGGTTTCTC
TGTCACCAAAAAATTCTTTGAACCTTCGACGAACGAAACTGTACAGCTCT
ACATAATTTTGAAAGTCATTTTTGAGAATTCTGAACTGAAATGTGAAGAT
ATGGGACGGCTCCTTCTCCTCTTTTTGAACTTGGACAATAAAAGAGTCGA
TAGCTTGATTTCCACCAATATCAGTggttttcaattcaaaattgtaGCTA
TTTAAATCACTTTCTGATGCAACAATTGCTATGATTTGAGTTGTCTCCTG
AAAATGTAACATTTCTGTTTGTCCGAATTGCAGTCCAGAAAAATGAATGG
AAACATCCAGATTCCTTGTATTTCCTTGTTCGACATCATTGAAGGTATTA
GCAGGAATGTTGAAAATAAACGTTGCACAAGTTGTAACTGACAAATCTTG
TAAAGGATTTGAGACTTCTGGTGGATTGTCCTTGTCACAGGGAGGTTTGA
TAACTTCTTCCACATTCAACACTTCAAATTCTGGTTTCAAATCAAGAAGT
GCGTTCAAGGATGTTGATGTGgctagaagtttgtttttgtaaaaatttaa
gTTAACAAAGTCACATTGAGGTGTCGACCATGTACAATTTCCGAACTTTA
TGACTTGATTCCCATCAGAAGAAGTTTGTGAGCTGACCATAGAAAATCCA
TTGTCGTTATCACCAAAATAGTTACCAACTTTAAAAGCTAATGCCAATCC
TGGACTATGGTTGAAGCTTGTTGACTCTGCCGTGAACTTGGTTGTTATGG
AGATACTGTAAGGGATTGTTTTTGAATCATCCGACACAATAAATTTAACG
ACAGTTTCTGTAGAAAGGTTTGATGAATCAGTGACTACTAATTTATATGT
GATTTCTCTCTGGAGTGGTGGATTGTATGTCGAAGGTAGCAATCCATAGA
TGATCTTAGTTGCGTCGTCGAATTGAATAATGTCAGTGCCTGTGAGCTTT
CTCCCTTGCTCATCTTGAAGTTGAACGTCAAGTTTTGACAAATCGCCGTC
TTCATCTTTAAAAGTATTATTTTCTATTCGATAAACTGTTACGCCACAGT
AAGAGAGGGTAATTGGACGAATTGGTCTGATTTGAACTGGAGGATTCAAA
GTACAGCTTGTCACGTTTTCTATAATTTTCTCGATGCGAAACTCTTCGTT
CATTTCATTGATCAGTTCTTGGGTtatgttttgattgtttccatCGACAA
ACATTTTTGTTCGCAGAAACTCGATCATAGGGAAATTGCAATAATCCAAC
AGTAAACTCCACTGGATCTCGGCATAACCATTTCTGCTTTGAAATTCTTT
GATAGTATAATAATTTATGTATATCAAGTCTTTGTATTCGGACCCAAACA
CTCTGTGTAATTTGGTGAGAAACAGCTGTATCTGTTTTGGAAAGATCCAA
TTAGAAATTTCATTTACGTACATATAAAAAGTAACCTTGTATTTGTTCAC
TGGTCGTGTACTTTTGCTCAAAATGAAAGCATAATTTGTGCCCATTAGAT
CTTCCAAAAACCTTGCATGCATTGAAATAATAACCTGTCCGTATAATCTA
CCCTCTACAGTTGGACTCGCTATAATTGGCGAGATGTCAAATTTTCCGTC
AAGTGGTCTTGATAAATACTCATAAAACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054573-exon-scaffold_243-1491911889:755284..759412 | TCONS_00054573-exon-scaffold_243-1491911889:755284..759412 | Clytia hemisphaerica | exon |
| TCONS_00054573-exon-scaffold_243-1510915933:755284..759412 | TCONS_00054573-exon-scaffold_243-1510915933:755284..759412 | Clytia hemisphaerica | exon |
| TCONS_00054573-exon-scaffold_243-1575043694:755284..759412 | TCONS_00054573-exon-scaffold_243-1575043694:755284..759412 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_243 | supercontig | scaffold_243:755284..759412 + |
Blast
The following BLAST results are available for this feature:
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