|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054831 ID=TCONS_00054831|Name=TCONS_00054831|organism=Clytia hemisphaerica|type=transcript|length=1945bpRun BLAST on NCBI protein sequence of TCONS_00054831-protein >TCONS_00054831-protein ID=TCONS_00054831-protein|Name=TCONS_00054831-protein|organism=Clytia hemisphaerica|type=polypeptide|length=493bp MSVYLVQLMLLCIIVQNVLLGKETTDGKLKYTKRDEEKFCTAKDNKHCTTRun BLAST on NCBI transcript from alignment at scaffold_245:624957..646322- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00054831 ID=TCONS_00054831|Name=TCONS_00054831|organism=Clytia hemisphaerica|type=transcript|length=21366bp|location=Sequence derived from alignment at scaffold_245:624957..646322- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_245:624957..646322- >TCONS_00054831 ID=TCONS_00054831|Name=TCONS_00054831|organism=Clytia hemisphaerica|type=CDS|length=25194bp|location=Sequence derived from alignment at scaffold_245:624957..646322- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00054831 vs. Swiss-Prot (Human)
Match: EOGT (EGF domain-specific O-linked N-acetylglucosamine transferase OS=Homo sapiens GN=EOGT PE=1 SV=1) HSP 1 Score: 457.218 bits (1175), Expect = 2.545e-153 Identity = 214/438 (48.86%), Postives = 295/438 (67.35%), Query Frame = 2
Query: 350 CWGYEKNCVEGKDFHLPSCT--DKGYSRNLDDQRRLFWQQAGFGYVKKFIESLHTVCASETNSGTSLKCTEGWEYCRAKNLYIDLRNQKFDDTSNKYAKGFLKHSEIGGKCIIDNDFMLKEVRFDGELNAWKADFLNFGEM----TASMNCDVTITQPTIFMKLDSGFNLYHHFCDFVNLYASQHINGSFNEDINIVHWDPTNSNYFDLFEDVWPAFSKHPLSYLSKYKGKRVCFQDAIFSLPPRMPYGLFYNMPVALHCHGSTFFEAFNEHLMDRLGISQDQFDEDIVRVTLLTRSTQYRRILNRDELVGAMKRVKILNVTVVDYKYREMPFLEQLKRSHNSDILIGMHGAGLTHSLFQPHWGALFELYNTEDPDCYRDLANIRGVEYFTWENKELLFQQDKGHHPTLGEHPKFTNYAFNVDEFMRILGKAVKGVLK 1645
CWGYEK+C F P C+ D G++ L+ +FW+QA FGY ++ +E +H +C + S +SL C+ +YCRA NLY+DLRN K +++ + F + EIGG C +D + E + L +W A+ ++ ++ CD+ I +PT FMKLD+G N+YHHFCDF+NLY +QH+N SF+ D+ IV WD ++ Y DLF D W AF+ + + +L Y KRVCF++A+FSL PRM YGLFYN P+ C + F AF +H++ RL I+Q+ + +RVT+L RST+YR+ILN++ELV A+K V V +VDYKYRE+ FL+QL+ +HN+DI IGMHGAGLTH LF P W A+FELYN ED CY DLA +RGV Y TW + +F QDKGHHPTLGEHPKFTNY+F+V+EFM ++ +A VL+
Sbjct: 79 CWGYEKSCKPEFRFGYPVCSYVDMGWTDTLESAEDIFWKQADFGYARERLEEMHVLCQPKETSDSSLVCSRYLQYCRATNLYLDLRNIK--RNHDRFKEDFFQSGEIGGHCKLDIRTLTSEGQRKSPLQSWFAELQSYTQLNFRPIEDAKCDIVIEKPTYFMKLDAGVNMYHHFCDFINLYITQHVNNSFSTDVYIVMWDTSSYGYGDLFSDTWNAFTDYDVIHLKTYDSKRVCFKEAVFSLLPRMRYGLFYNTPLISGCQNTGLFRAFAQHVLHRLNITQEGPKDGKIRVTILARSTEYRKILNQNELVNALKTVSTFEVQIVDYKYRELGFLDQLRITHNTDIFIGMHGAGLTHLLFLPDWAAVFELYNCEDERCYLDLARLRGVHYITWRRQNKVFPQDKGHHPTLGEHPKFTNYSFDVEEFMYLVLQAADHVLQ 514 The following BLAST results are available for this feature:
BLAST of TCONS_00054831 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.