TCONS_00054843 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054843
Unique NameTCONS_00054843
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1728

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054843 ID=TCONS_00054843|Name=TCONS_00054843|organism=Clytia hemisphaerica|type=transcript|length=1728bp
ATAGGAGATGAGGGAGTGGGGGGTTTCTACGAAATAAATCAttatttgaa
cattttcaaaagtttaccTTTCCTCCTTATTCAAAAGCTGTAAATAAAAA
TACTTAGCAAATTTTCTCAGTCAAGCTCAAGATTCGACGACAAGAGGAAT
TCATCTTGGTAGGTAAACTATAAAAAGACTTATTTCCTGACAAAAATCAA
ACCTTGAAAACAAGATGTCGAGAATGGGTGTTATTGTTTTAGCAATCACT
TTGGTTTTGTTTGCAGCTTCAAATGTGGAGAGCAAGAAAATCTCAGCCAC
ACTCCAAGTGAAGTTTGAAGCCATCAACAAAACAGATCCAGCTCCATTAC
ACCTTACATTTGATGATTGGTATTACGCTATCAATGCATTCAAACTTGGT
AACACAAATTCAACACCATGTTACAACTTCGAATACACAACAAGCGATTT
TGGAGCTTTCATCACTGAAGTTTGTGGCGTGAAAAACAACTTCACAGCCA
ATTTGAATTGGATGTTTTTGGTGAATGGGATAGAAGCACCAGTTGGagtt
tcttgtctcaaagttcAAGGCAATGATAATTTGACATTGGTTTATAAACA
TGTACAACATAAGCCACAACCACCTTCGAAAAAAATCCCAGCAACACTTC
GAGTGCAGTTTGAAGCAATCGACAAACCAGATCCAGCTCCATTAAATGTC
ACATTTGATGATTGGTATTACGCTATCAATGCATTCAAACTTGGAAACAC
AAATACAACACCATGTTACAACTTCGAATACACCACGGGAGATTTTGGAG
CTTTTGTTACTGAAGTTTGTGACGTGAAAAACAACCAATCTGAAAATCTA
TACTGGATGTTTGACATCAATGGAAAGCAATCTCCAGTCGGAATATCTTG
TTACCAAGTGCAGGAGAATGATAACTTGACATTAGTCTACAAAGACACGT
CAATAAAACCTAAACCATCATCAGCTGTTGGTCTTTCGGCTATCTATCAG
CTTCTTGCCCCTTCCATACTTTTACTGTTTCTCTATTAATTGTGATAGCT
AGAATCATTAAGATAGCAAAAGAGGGaaggaaaatttctaatttcaaatt
tttataaatgACAGCTTTAATCCAAAAATGGCTATTGGTCAATGAAATTC
AGCCGAATGCTAGAGCCAAATCTTCAACCCTTCCCACACAAGAGAAAGTG
ATGCCTTGAAATTTACACCGTGACTcggacgacggattgaatctagttGA
ATcaagtttcttttgttttcgcaTCCTACCTTTTTCGTAACCATGcagta
aattttactttcaatccggcgtttgtaaAAATCATATTGACCGCGCAACT
TCCTTGGGAATAAGTGGCTTTAAATCCTATGTATAGGAGATTTACCTTTA
TCGGCTATATCTTTTTGCTACCAGCTTTGAAAATCATGTTTTAATAGAAT
ATAATAATAGAATAAGGGGATCCGTGGCATTCCCCCCATTTGAGTTaatt
attgacaaaaactgTGTAAATAACTAGAGATGCTCGTGATTTCTTTGTAG
TAGTTTTGTATCGTAGCTAATTTGTTATactttaaaatcttattttgtaa
aGCCTTTATGATAATTCAACCTCTAAAATTATGAAGAATCCGCCTATAAA
GACTTATCGATTCACTCTAAAGCAATAGTCAAAAATCAACCCCGGGGAAC
AAAAATAAACTAAGACTTTCATCTCTAT
Run BLAST on NCBI

protein sequence of TCONS_00054843-protein

>TCONS_00054843-protein ID=TCONS_00054843-protein|Name=TCONS_00054843-protein|organism=Clytia hemisphaerica|type=polypeptide|length=274bp
MSRMGVIVLAITLVLFAASNVESKKISATLQVKFEAINKTDPAPLHLTFD
DWYYAINAFKLGNTNSTPCYNFEYTTSDFGAFITEVCGVKNNFTANLNWM
FLVNGIEAPVGVSCLKVQGNDNLTLVYKHVQHKPQPPSKKIPATLRVQFE
AIDKPDPAPLNVTFDDWYYAINAFKLGNTNTTPCYNFEYTTGDFGAFVTE
VCDVKNNQSENLYWMFDINGKQSPVGISCYQVQENDNLTLVYKDTSIKPK
PSSAVGLSAIYQLLAPSILLLFLY
Run BLAST on NCBI

transcript from alignment at scaffold_245:766111..769346-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054843 ID=TCONS_00054843|Name=TCONS_00054843|organism=Clytia hemisphaerica|type=transcript|length=3236bp|location=Sequence derived from alignment at scaffold_245:766111..769346- (Clytia hemisphaerica)
ATAGGAGATGAGGGAGTGGGGGGTTTCTACGAAATAAATCATTATTTGAA CATTTTCAAAAGTTTACCTTTCCTCCTTATTCAAAAGCTGTAAATAAAAA TACTTAGCAAATTTTCTCAGTCAAGCTCAAGATTCGACGACAAGAGGAAT TCATCTTGGTAGGTAAACTATAAAAAGACTTATTTCCTGACAAAAATCAA ACCTTGAAAACAAGATGTCGAGAATGGGTGTTATTGTTTTAGCAATCACT TTGGTTTTGTTTGCAGCTTCAAATGTGGAGAGCAAGGTAAGAAATCATTT TCATTCTTTAAAAGGCTTAAACACTCTCTCCCACCACGTTGCAAATTCTT CCAAAAATCGCCCATTTTACATCCCACTGGACAATACACTTTAATACCGT TAACTCCCGTGATAAACAAAGAGGAATGAATCCGTAGGGGTGGTACAGTC ACTTTCATTCGGGGTTGTGGACGGCGAAATATGAAATTTGTCGTTCTTTT TTGTCGTTCTTTTTGTCTATTTTTAGTAATGCAGGATTTGTTAGATAGAC CCCATCCCATATACGTCTCACTTGAAATGTTCTAATTTAGCCAAACTCCA GTAATAGAATTTTCAAAACGTTTTCTATTGGAATCCATGGTTTAAACGTG AAATACCCTATCAAAGCAAAATGACATTATTAGATCAATACGACTTTTTT CAAATGTTCACTCGTAATTTGGTATTGTTCACCGCTATTTTATTACGTTA CGTACAGGTACGATACTACTACAACAATCTGAAAAAGGACCCCATGTAGA TTTCCCCTGATTTTCCAATCAGTCAGAGCACTAATTGTACAGTAACTTAA GATTTAACCGACCAGGTCTGTTGGAAAGATTAGTACACGTTTTTTAATAA GAACATAAAGGCCTCGATGGCCAAAATTAATAACAAGTTAAGAACATTTT AAGGCTTTGCGAACTTTAAAACACCCGATTCCTTAGGAAAATGGACAAAA ATACTCACAACATGGTGAAAATATGAACATGTTAAGAACATTTTTAGGCT TTTGGGTGTCTAGCGCGAAAAATAGTCCCGCAAAATGCAATTTTCACTGA AAATCCTCAAAAACCTCTAGAAAATATGAATTAGAAATATAAAAGATTTT CAGCAAAAAGTGGGTGTCAACCACAAAAATTAGTTCCCTCAAGGTATTGG TTTGGTAAAACAAAAAATAAATATCTATCTTTCTTAACTGTCTTGTTCTG CTACGNTTCGGTCAAACAAAAAATAAATATCTATCTTACTTAACTGTCTT GTTCTGCTACCTTCTGCTGTTACTAAATCTTTGAAGACCTGCACTTGGCA ATAAGCTAGAAATGATGAATGGGAAAGCTCAACTTTATTTGTATTTACAC TTAGAAAATCTCAGCCACACTCCAAGTGAAGTTTGAAGCCATCAACAAAA CAGATCCAGCTCCATTACACCTTACATTTGATGATTGGTATTACGCTATC AATGCATTCAAACTTGGTAACACAAATTCAACACCATGTTACAACTTCGA ATACACAACAAGCGATTTTGGAGCTTTCATCACTGAAGTTTGTGGCGTGA AAAACAACTTCACAGCCAATTTGAATTGGATGTTTTTGGTGAATGGGATA GAAGCACCAGTTGGAGTTTCTTGTCTCAAAGTTCAAGGCAATGATAATTT GACATTGGTTTATAAACATGTACAACATAAGCCACAACCACCTTCGAAAG TAAGTTGTATTACTTTCTTAAAACTTGTCCGAGTCTACATAGTGAAAGTG CTTCGCCTAACTTTTAAGAACATGGTTCAAATTAACAAAATAGATTGGTC ATCTTCCTTCTTCGGTTATCTATTTTTAAAACAAAGTTTATTTTTGTAAC AAGGAATGCCATTCAATTTGCCTCAATGACTGAGATACTGATAATGAATG AGAATTACAAACCAAAAGTCTGCCAGACAGTAGAAACTTTGGAGGAAGAA TATTAACCATGATTTATTGATTCTATTCTGGATATTATTTTGGCATTTAT GATGCCTATTGATAAAAAGTATTTTGAATATTAATTTTCGCAATGCTTCC AATAAATTCCTAAAGCTAAAAGTTTTCACCGATTTCTAGAAAATCCCAGC AACACTTCGAGTGCAGTTTGAAGCAATCGACAAACCAGATCCAGCTCCAT TAAATGTCACATTTGATGATTGGTATTACGCTATCAATGCATTCAAACTT GGAAACACAAATACAACACCATGTTACAACTTCGAATACACCACGGGAGA TTTTGGAGCTTTTGTTACTGAAGTTTGTGACGTGAAAAACAACCAATCTG AAAATCTATACTGGATGTTTGACATCAATGGAAAGCAATCTCCAGTCGGA ATATCTTGTTACCAAGTGCAGGAGAATGATAACTTGACATTAGTCTACAA AGACACGTCAATAAAACCTAAACCATCATCAGCTGTTGGTCTTTCGGCTA TCTATCAGCTTCTTGCCCCTTCCATACTTTTACTGTTTCTCTATTAATTG TGATAGCTAGAATCATTAAGATAGCAAAAGAGGGAAGGAAAATTTCTAAT TTCAAATTTTTATAAATGACAGCTTTAATCCAAAAATGGCTATTGGTCAA TGAAATTCAGCCGAATGCTAGAGCCAAATCTTCAACCCTTCCCACACAAG AGAAAGTGATGCCTTGAAATTTACACCGTGACTCGGACGACGGATTGAAT CTAGTTGAATCAAGTTTCTTTTGTTTTCGCATCCTACCTTTTTCGTAACC ATGCAGTAAATTTTACTTTCAATCCGGCGTTTGTAAAAATCATATTGACC GCGCAACTTCCTTGGGAATAAGTGGCTTTAAATCCTATGTATAGGAGATT TACCTTTATCGGCTATATCTTTTTGCTACCAGCTTTGAAAATCATGTTTT AATAGAATATAATAATAGAATAAGGGGATCCGTGGCATTCCCCCCATTTG AGTTAATTATTGACAAAAACTGTGTAAATAACTAGAGATGCTCGTGATTT CTTTGTAGTAGTTTTGTATCGTAGCTAATTTGTTATACTTTAAAATCTTA TTTTGTAAAGCCTTTATGATAATTCAACCTCTAAAATTATGAAGAATCCG CCTATAAAGACTTATCGATTCACTCTAAAGCAATAGTCAAAAATCAACCC CGGGGAACAAAAATAAACTAAGACTTTCATCTCTAT

Coding sequence (CDS) from alignment at scaffold_245:766111..769346-

>TCONS_00054843 ID=TCONS_00054843|Name=TCONS_00054843|organism=Clytia hemisphaerica|type=CDS|length=2475bp|location=Sequence derived from alignment at scaffold_245:766111..769346- (Clytia hemisphaerica)
AAAATCCCAGCAACACTTCGAGTGCAGTTTGAAGCAATCGACAAACCAGA
TCCAGCTCCATTAAATGTCACATTTGATGATTGGTATTACGCTATCAATG
CATTCAAACTTGGAAACACAAATACAACACCATGTTACAACTTCGAATAC
ACCACGGGAGATTTTGGAGCTTTTGTTACTGAAGTTTGTGACGTGAAAAA
CAACCAATCTGAAAATCTATACTGGATGTTTGACATCAATGGAAAGCAAT
CTCCAGTCGGAATATCTTGTTACCAAGTGCAGGAGAATGATAACTTGACA
TTAGTCTACAAAGACACGTCAATAAAACCTAAACCATCATCAGCTGTTGG
TCTTTCGGCTATCTATCAGCTTCTTGCCCCTTCCATACTTTTACTGTTTC
TCTATTAAAAAATCTCAGCCACACTCCAAGTGAAGTTTGAAGCCATCAAC
AAAACAGATCCAGCTCCATTACACCTTACATTTGATGATTGGTATTACGC
TATCAATGCATTCAAACTTGGTAACACAAATTCAACACCATGTTACAACT
TCGAATACACAACAAGCGATTTTGGAGCTTTCATCACTGAAGTTTGTGGC
GTGAAAAACAACTTCACAGCCAATTTGAATTGGATGTTTTTGGTGAATGG
GATAGAAGCACCAGTTGGAGTTTCTTGTCTCAAAGTTCAAGGCAATGATA
ATTTGACATTGGTTTATAAACATGTACAACATAAGCCACAACCACCTTCG
AAAATGTCGAGAATGGGTGTTATTGTTTTAGCAATCACTTTGGTTTTGTT
TGCAGCTTCAAATGTGGAGAGCAAGAAAATCCCAGCAACACTTCGAGTGC
AGTTTGAAGCAATCGACAAACCAGATCCAGCTCCATTAAATGTCACATTT
GATGATTGGTATTACGCTATCAATGCATTCAAACTTGGAAACACAAATAC
AACACCATGTTACAACTTCGAATACACCACGGGAGATTTTGGAGCTTTTG
TTACTGAAGTTTGTGACGTGAAAAACAACCAATCTGAAAATCTATACTGG
ATGTTTGACATCAATGGAAAGCAATCTCCAGTCGGAATATCTTGTTACCA
AGTGCAGGAGAATGATAACTTGACATTAGTCTACAAAGACACGTCAATAA
AACCTAAACCATCATCAGCTGTTGGTCTTTCGGCTATCTATCAGCTTCTT
GCCCCTTCCATACTTTTACTGTTTCTCTATTAAAAAATCTCAGCCACACT
CCAAGTGAAGTTTGAAGCCATCAACAAAACAGATCCAGCTCCATTACACC
TTACATTTGATGATTGGTATTACGCTATCAATGCATTCAAACTTGGTAAC
ACAAATTCAACACCATGTTACAACTTCGAATACACAACAAGCGATTTTGG
AGCTTTCATCACTGAAGTTTGTGGCGTGAAAAACAACTTCACAGCCAATT
TGAATTGGATGTTTTTGGTGAATGGGATAGAAGCACCAGTTGGAGTTTCT
TGTCTCAAAGTTCAAGGCAATGATAATTTGACATTGGTTTATAAACATGT
ACAACATAAGCCACAACCACCTTCGAAAATGTCGAGAATGGGTGTTATTG
TTTTAGCAATCACTTTGGTTTTGTTTGCAGCTTCAAATGTGGAGAGCAAG
AAAATCCCAGCAACACTTCGAGTGCAGTTTGAAGCAATCGACAAACCAGA
TCCAGCTCCATTAAATGTCACATTTGATGATTGGTATTACGCTATCAATG
CATTCAAACTTGGAAACACAAATACAACACCATGTTACAACTTCGAATAC
ACCACGGGAGATTTTGGAGCTTTTGTTACTGAAGTTTGTGACGTGAAAAA
CAACCAATCTGAAAATCTATACTGGATGTTTGACATCAATGGAAAGCAAT
CTCCAGTCGGAATATCTTGTTACCAAGTGCAGGAGAATGATAACTTGACA
TTAGTCTACAAAGACACGTCAATAAAACCTAAACCATCATCAGCTGTTGG
TCTTTCGGCTATCTATCAGCTTCTTGCCCCTTCCATACTTTTACTGTTTC
TCTATTAAAAAATCTCAGCCACACTCCAAGTGAAGTTTGAAGCCATCAAC
AAAACAGATCCAGCTCCATTACACCTTACATTTGATGATTGGTATTACGC
TATCAATGCATTCAAACTTGGTAACACAAATTCAACACCATGTTACAACT
TCGAATACACAACAAGCGATTTTGGAGCTTTCATCACTGAAGTTTGTGGC
GTGAAAAACAACTTCACAGCCAATTTGAATTGGATGTTTTTGGTGAATGG
GATAGAAGCACCAGTTGGAGTTTCTTGTCTCAAAGTTCAAGGCAATGATA
ATTTGACATTGGTTTATAAACATGTACAACATAAGCCACAACCACCTTCG
AAAATGTCGAGAATGGGTGTTATTGTTTTAGCAATCACTTTGGTTTTGTT
TGCAGCTTCAAATGTGGAGAGCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034545XLOC_034545Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054843-proteinTCONS_00054843-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054843-exon-scaffold_245-1575043694:769061..769346TCONS_00054843-exon-scaffold_245-1575043694:769061..769346Clytia hemisphaericaexon
TCONS_00054843-exon-scaffold_245-1575043694:767598..767942TCONS_00054843-exon-scaffold_245-1575043694:767598..767942Clytia hemisphaericaexon
TCONS_00054843-exon-scaffold_245-1575043694:766111..767207TCONS_00054843-exon-scaffold_245-1575043694:766111..767207Clytia hemisphaericaexon
TCONS_00054843-exon-scaffold_245-1510915933:769061..769346TCONS_00054843-exon-scaffold_245-1510915933:769061..769346Clytia hemisphaericaexon
TCONS_00054843-exon-scaffold_245-1510915933:767598..767942TCONS_00054843-exon-scaffold_245-1510915933:767598..767942Clytia hemisphaericaexon
TCONS_00054843-exon-scaffold_245-1510915933:766111..767207TCONS_00054843-exon-scaffold_245-1510915933:766111..767207Clytia hemisphaericaexon
TCONS_00054843-exon-scaffold_245-1491911889:769061..769346TCONS_00054843-exon-scaffold_245-1491911889:769061..769346Clytia hemisphaericaexon
TCONS_00054843-exon-scaffold_245-1491911889:767598..767942TCONS_00054843-exon-scaffold_245-1491911889:767598..767942Clytia hemisphaericaexon
TCONS_00054843-exon-scaffold_245-1491911889:766111..767207TCONS_00054843-exon-scaffold_245-1491911889:766111..767207Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_245supercontigscaffold_245:766111..769346 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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min expression (0 tpm) - - (171.314 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.046712 0 0 0 0.220478 0.0497785 0.11446 0.253005 0.728221 2.48665 0.591569 0.264434 109.401 66.0586 0.331558 0 0.227932 0.449275 94.4951 171.314 0.516465 0.396528 4.28728 2.60507 111.74 107.066 74.0434 67.5513 3.95257 3.27198
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR027954DUF4430
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054843 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
2004006008001000120014001600Sequence
Match NameE-valueIdentityDescription
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