Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054843 ID=TCONS_00054843|Name=TCONS_00054843|organism=Clytia hemisphaerica|type=transcript|length=1728bp ATAGGAGATGAGGGAGTGGGGGGTTTCTACGAAATAAATCAttatttgaa cattttcaaaagtttaccTTTCCTCCTTATTCAAAAGCTGTAAATAAAAA TACTTAGCAAATTTTCTCAGTCAAGCTCAAGATTCGACGACAAGAGGAAT TCATCTTGGTAGGTAAACTATAAAAAGACTTATTTCCTGACAAAAATCAA ACCTTGAAAACAAGATGTCGAGAATGGGTGTTATTGTTTTAGCAATCACT TTGGTTTTGTTTGCAGCTTCAAATGTGGAGAGCAAGAAAATCTCAGCCAC ACTCCAAGTGAAGTTTGAAGCCATCAACAAAACAGATCCAGCTCCATTAC ACCTTACATTTGATGATTGGTATTACGCTATCAATGCATTCAAACTTGGT AACACAAATTCAACACCATGTTACAACTTCGAATACACAACAAGCGATTT TGGAGCTTTCATCACTGAAGTTTGTGGCGTGAAAAACAACTTCACAGCCA ATTTGAATTGGATGTTTTTGGTGAATGGGATAGAAGCACCAGTTGGagtt tcttgtctcaaagttcAAGGCAATGATAATTTGACATTGGTTTATAAACA TGTACAACATAAGCCACAACCACCTTCGAAAAAAATCCCAGCAACACTTC GAGTGCAGTTTGAAGCAATCGACAAACCAGATCCAGCTCCATTAAATGTC ACATTTGATGATTGGTATTACGCTATCAATGCATTCAAACTTGGAAACAC AAATACAACACCATGTTACAACTTCGAATACACCACGGGAGATTTTGGAG CTTTTGTTACTGAAGTTTGTGACGTGAAAAACAACCAATCTGAAAATCTA TACTGGATGTTTGACATCAATGGAAAGCAATCTCCAGTCGGAATATCTTG TTACCAAGTGCAGGAGAATGATAACTTGACATTAGTCTACAAAGACACGT CAATAAAACCTAAACCATCATCAGCTGTTGGTCTTTCGGCTATCTATCAG CTTCTTGCCCCTTCCATACTTTTACTGTTTCTCTATTAATTGTGATAGCT AGAATCATTAAGATAGCAAAAGAGGGaaggaaaatttctaatttcaaatt tttataaatgACAGCTTTAATCCAAAAATGGCTATTGGTCAATGAAATTC AGCCGAATGCTAGAGCCAAATCTTCAACCCTTCCCACACAAGAGAAAGTG ATGCCTTGAAATTTACACCGTGACTcggacgacggattgaatctagttGA ATcaagtttcttttgttttcgcaTCCTACCTTTTTCGTAACCATGcagta aattttactttcaatccggcgtttgtaaAAATCATATTGACCGCGCAACT TCCTTGGGAATAAGTGGCTTTAAATCCTATGTATAGGAGATTTACCTTTA TCGGCTATATCTTTTTGCTACCAGCTTTGAAAATCATGTTTTAATAGAAT ATAATAATAGAATAAGGGGATCCGTGGCATTCCCCCCATTTGAGTTaatt attgacaaaaactgTGTAAATAACTAGAGATGCTCGTGATTTCTTTGTAG TAGTTTTGTATCGTAGCTAATTTGTTATactttaaaatcttattttgtaa aGCCTTTATGATAATTCAACCTCTAAAATTATGAAGAATCCGCCTATAAA GACTTATCGATTCACTCTAAAGCAATAGTCAAAAATCAACCCCGGGGAAC AAAAATAAACTAAGACTTTCATCTCTAT Run BLAST on NCBI protein sequence of TCONS_00054843-protein >TCONS_00054843-protein ID=TCONS_00054843-protein|Name=TCONS_00054843-protein|organism=Clytia hemisphaerica|type=polypeptide|length=274bp
MSRMGVIVLAITLVLFAASNVESKKISATLQVKFEAINKTDPAPLHLTFD DWYYAINAFKLGNTNSTPCYNFEYTTSDFGAFITEVCGVKNNFTANLNWM FLVNGIEAPVGVSCLKVQGNDNLTLVYKHVQHKPQPPSKKIPATLRVQFE AIDKPDPAPLNVTFDDWYYAINAFKLGNTNTTPCYNFEYTTGDFGAFVTE VCDVKNNQSENLYWMFDINGKQSPVGISCYQVQENDNLTLVYKDTSIKPK PSSAVGLSAIYQLLAPSILLLFLY Run BLAST on NCBI transcript from alignment at scaffold_245:766111..769346- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054843 ID=TCONS_00054843|Name=TCONS_00054843|organism=Clytia hemisphaerica|type=transcript|length=3236bp|location=Sequence derived from alignment at scaffold_245:766111..769346- (Clytia hemisphaerica) ATAGGAGATGAGGGAGTGGGGGGTTTCTACGAAATAAATCATTATTTGAA
CATTTTCAAAAGTTTACCTTTCCTCCTTATTCAAAAGCTGTAAATAAAAA
TACTTAGCAAATTTTCTCAGTCAAGCTCAAGATTCGACGACAAGAGGAAT
TCATCTTGGTAGGTAAACTATAAAAAGACTTATTTCCTGACAAAAATCAA
ACCTTGAAAACAAGATGTCGAGAATGGGTGTTATTGTTTTAGCAATCACT
TTGGTTTTGTTTGCAGCTTCAAATGTGGAGAGCAAGGTAAGAAATCATTT
TCATTCTTTAAAAGGCTTAAACACTCTCTCCCACCACGTTGCAAATTCTT
CCAAAAATCGCCCATTTTACATCCCACTGGACAATACACTTTAATACCGT
TAACTCCCGTGATAAACAAAGAGGAATGAATCCGTAGGGGTGGTACAGTC
ACTTTCATTCGGGGTTGTGGACGGCGAAATATGAAATTTGTCGTTCTTTT
TTGTCGTTCTTTTTGTCTATTTTTAGTAATGCAGGATTTGTTAGATAGAC
CCCATCCCATATACGTCTCACTTGAAATGTTCTAATTTAGCCAAACTCCA
GTAATAGAATTTTCAAAACGTTTTCTATTGGAATCCATGGTTTAAACGTG
AAATACCCTATCAAAGCAAAATGACATTATTAGATCAATACGACTTTTTT
CAAATGTTCACTCGTAATTTGGTATTGTTCACCGCTATTTTATTACGTTA
CGTACAGGTACGATACTACTACAACAATCTGAAAAAGGACCCCATGTAGA
TTTCCCCTGATTTTCCAATCAGTCAGAGCACTAATTGTACAGTAACTTAA
GATTTAACCGACCAGGTCTGTTGGAAAGATTAGTACACGTTTTTTAATAA
GAACATAAAGGCCTCGATGGCCAAAATTAATAACAAGTTAAGAACATTTT
AAGGCTTTGCGAACTTTAAAACACCCGATTCCTTAGGAAAATGGACAAAA
ATACTCACAACATGGTGAAAATATGAACATGTTAAGAACATTTTTAGGCT
TTTGGGTGTCTAGCGCGAAAAATAGTCCCGCAAAATGCAATTTTCACTGA
AAATCCTCAAAAACCTCTAGAAAATATGAATTAGAAATATAAAAGATTTT
CAGCAAAAAGTGGGTGTCAACCACAAAAATTAGTTCCCTCAAGGTATTGG
TTTGGTAAAACAAAAAATAAATATCTATCTTTCTTAACTGTCTTGTTCTG
CTACGNTTCGGTCAAACAAAAAATAAATATCTATCTTACTTAACTGTCTT
GTTCTGCTACCTTCTGCTGTTACTAAATCTTTGAAGACCTGCACTTGGCA
ATAAGCTAGAAATGATGAATGGGAAAGCTCAACTTTATTTGTATTTACAC
TTAGAAAATCTCAGCCACACTCCAAGTGAAGTTTGAAGCCATCAACAAAA
CAGATCCAGCTCCATTACACCTTACATTTGATGATTGGTATTACGCTATC
AATGCATTCAAACTTGGTAACACAAATTCAACACCATGTTACAACTTCGA
ATACACAACAAGCGATTTTGGAGCTTTCATCACTGAAGTTTGTGGCGTGA
AAAACAACTTCACAGCCAATTTGAATTGGATGTTTTTGGTGAATGGGATA
GAAGCACCAGTTGGAGTTTCTTGTCTCAAAGTTCAAGGCAATGATAATTT
GACATTGGTTTATAAACATGTACAACATAAGCCACAACCACCTTCGAAAG
TAAGTTGTATTACTTTCTTAAAACTTGTCCGAGTCTACATAGTGAAAGTG
CTTCGCCTAACTTTTAAGAACATGGTTCAAATTAACAAAATAGATTGGTC
ATCTTCCTTCTTCGGTTATCTATTTTTAAAACAAAGTTTATTTTTGTAAC
AAGGAATGCCATTCAATTTGCCTCAATGACTGAGATACTGATAATGAATG
AGAATTACAAACCAAAAGTCTGCCAGACAGTAGAAACTTTGGAGGAAGAA
TATTAACCATGATTTATTGATTCTATTCTGGATATTATTTTGGCATTTAT
GATGCCTATTGATAAAAAGTATTTTGAATATTAATTTTCGCAATGCTTCC
AATAAATTCCTAAAGCTAAAAGTTTTCACCGATTTCTAGAAAATCCCAGC
AACACTTCGAGTGCAGTTTGAAGCAATCGACAAACCAGATCCAGCTCCAT
TAAATGTCACATTTGATGATTGGTATTACGCTATCAATGCATTCAAACTT
GGAAACACAAATACAACACCATGTTACAACTTCGAATACACCACGGGAGA
TTTTGGAGCTTTTGTTACTGAAGTTTGTGACGTGAAAAACAACCAATCTG
AAAATCTATACTGGATGTTTGACATCAATGGAAAGCAATCTCCAGTCGGA
ATATCTTGTTACCAAGTGCAGGAGAATGATAACTTGACATTAGTCTACAA
AGACACGTCAATAAAACCTAAACCATCATCAGCTGTTGGTCTTTCGGCTA
TCTATCAGCTTCTTGCCCCTTCCATACTTTTACTGTTTCTCTATTAATTG
TGATAGCTAGAATCATTAAGATAGCAAAAGAGGGAAGGAAAATTTCTAAT
TTCAAATTTTTATAAATGACAGCTTTAATCCAAAAATGGCTATTGGTCAA
TGAAATTCAGCCGAATGCTAGAGCCAAATCTTCAACCCTTCCCACACAAG
AGAAAGTGATGCCTTGAAATTTACACCGTGACTCGGACGACGGATTGAAT
CTAGTTGAATCAAGTTTCTTTTGTTTTCGCATCCTACCTTTTTCGTAACC
ATGCAGTAAATTTTACTTTCAATCCGGCGTTTGTAAAAATCATATTGACC
GCGCAACTTCCTTGGGAATAAGTGGCTTTAAATCCTATGTATAGGAGATT
TACCTTTATCGGCTATATCTTTTTGCTACCAGCTTTGAAAATCATGTTTT
AATAGAATATAATAATAGAATAAGGGGATCCGTGGCATTCCCCCCATTTG
AGTTAATTATTGACAAAAACTGTGTAAATAACTAGAGATGCTCGTGATTT
CTTTGTAGTAGTTTTGTATCGTAGCTAATTTGTTATACTTTAAAATCTTA
TTTTGTAAAGCCTTTATGATAATTCAACCTCTAAAATTATGAAGAATCCG
CCTATAAAGACTTATCGATTCACTCTAAAGCAATAGTCAAAAATCAACCC
CGGGGAACAAAAATAAACTAAGACTTTCATCTCTAT Coding sequence (CDS) from alignment at scaffold_245:766111..769346- >TCONS_00054843 ID=TCONS_00054843|Name=TCONS_00054843|organism=Clytia hemisphaerica|type=CDS|length=2475bp|location=Sequence derived from alignment at scaffold_245:766111..769346- (Clytia hemisphaerica) AAAATCCCAGCAACACTTCGAGTGCAGTTTGAAGCAATCGACAAACCAGA TCCAGCTCCATTAAATGTCACATTTGATGATTGGTATTACGCTATCAATG CATTCAAACTTGGAAACACAAATACAACACCATGTTACAACTTCGAATAC ACCACGGGAGATTTTGGAGCTTTTGTTACTGAAGTTTGTGACGTGAAAAA CAACCAATCTGAAAATCTATACTGGATGTTTGACATCAATGGAAAGCAAT CTCCAGTCGGAATATCTTGTTACCAAGTGCAGGAGAATGATAACTTGACA TTAGTCTACAAAGACACGTCAATAAAACCTAAACCATCATCAGCTGTTGG TCTTTCGGCTATCTATCAGCTTCTTGCCCCTTCCATACTTTTACTGTTTC TCTATTAAAAAATCTCAGCCACACTCCAAGTGAAGTTTGAAGCCATCAAC AAAACAGATCCAGCTCCATTACACCTTACATTTGATGATTGGTATTACGC TATCAATGCATTCAAACTTGGTAACACAAATTCAACACCATGTTACAACT TCGAATACACAACAAGCGATTTTGGAGCTTTCATCACTGAAGTTTGTGGC GTGAAAAACAACTTCACAGCCAATTTGAATTGGATGTTTTTGGTGAATGG GATAGAAGCACCAGTTGGAGTTTCTTGTCTCAAAGTTCAAGGCAATGATA ATTTGACATTGGTTTATAAACATGTACAACATAAGCCACAACCACCTTCG AAAATGTCGAGAATGGGTGTTATTGTTTTAGCAATCACTTTGGTTTTGTT TGCAGCTTCAAATGTGGAGAGCAAGAAAATCCCAGCAACACTTCGAGTGC AGTTTGAAGCAATCGACAAACCAGATCCAGCTCCATTAAATGTCACATTT GATGATTGGTATTACGCTATCAATGCATTCAAACTTGGAAACACAAATAC AACACCATGTTACAACTTCGAATACACCACGGGAGATTTTGGAGCTTTTG TTACTGAAGTTTGTGACGTGAAAAACAACCAATCTGAAAATCTATACTGG ATGTTTGACATCAATGGAAAGCAATCTCCAGTCGGAATATCTTGTTACCA AGTGCAGGAGAATGATAACTTGACATTAGTCTACAAAGACACGTCAATAA AACCTAAACCATCATCAGCTGTTGGTCTTTCGGCTATCTATCAGCTTCTT GCCCCTTCCATACTTTTACTGTTTCTCTATTAAAAAATCTCAGCCACACT CCAAGTGAAGTTTGAAGCCATCAACAAAACAGATCCAGCTCCATTACACC TTACATTTGATGATTGGTATTACGCTATCAATGCATTCAAACTTGGTAAC ACAAATTCAACACCATGTTACAACTTCGAATACACAACAAGCGATTTTGG AGCTTTCATCACTGAAGTTTGTGGCGTGAAAAACAACTTCACAGCCAATT TGAATTGGATGTTTTTGGTGAATGGGATAGAAGCACCAGTTGGAGTTTCT TGTCTCAAAGTTCAAGGCAATGATAATTTGACATTGGTTTATAAACATGT ACAACATAAGCCACAACCACCTTCGAAAATGTCGAGAATGGGTGTTATTG TTTTAGCAATCACTTTGGTTTTGTTTGCAGCTTCAAATGTGGAGAGCAAG AAAATCCCAGCAACACTTCGAGTGCAGTTTGAAGCAATCGACAAACCAGA TCCAGCTCCATTAAATGTCACATTTGATGATTGGTATTACGCTATCAATG CATTCAAACTTGGAAACACAAATACAACACCATGTTACAACTTCGAATAC ACCACGGGAGATTTTGGAGCTTTTGTTACTGAAGTTTGTGACGTGAAAAA CAACCAATCTGAAAATCTATACTGGATGTTTGACATCAATGGAAAGCAAT CTCCAGTCGGAATATCTTGTTACCAAGTGCAGGAGAATGATAACTTGACA TTAGTCTACAAAGACACGTCAATAAAACCTAAACCATCATCAGCTGTTGG TCTTTCGGCTATCTATCAGCTTCTTGCCCCTTCCATACTTTTACTGTTTC TCTATTAAAAAATCTCAGCCACACTCCAAGTGAAGTTTGAAGCCATCAAC AAAACAGATCCAGCTCCATTACACCTTACATTTGATGATTGGTATTACGC TATCAATGCATTCAAACTTGGTAACACAAATTCAACACCATGTTACAACT TCGAATACACAACAAGCGATTTTGGAGCTTTCATCACTGAAGTTTGTGGC GTGAAAAACAACTTCACAGCCAATTTGAATTGGATGTTTTTGGTGAATGG GATAGAAGCACCAGTTGGAGTTTCTTGTCTCAAAGTTCAAGGCAATGATA ATTTGACATTGGTTTATAAACATGTACAACATAAGCCACAACCACCTTCG AAAATGTCGAGAATGGGTGTTATTGTTTTAGCAATCACTTTGGTTTTGTT TGCAGCTTCAAATGTGGAGAGCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00054843-exon-scaffold_245-1575043694:769061..769346 | TCONS_00054843-exon-scaffold_245-1575043694:769061..769346 | Clytia hemisphaerica | exon |
TCONS_00054843-exon-scaffold_245-1575043694:767598..767942 | TCONS_00054843-exon-scaffold_245-1575043694:767598..767942 | Clytia hemisphaerica | exon |
TCONS_00054843-exon-scaffold_245-1575043694:766111..767207 | TCONS_00054843-exon-scaffold_245-1575043694:766111..767207 | Clytia hemisphaerica | exon |
TCONS_00054843-exon-scaffold_245-1510915933:769061..769346 | TCONS_00054843-exon-scaffold_245-1510915933:769061..769346 | Clytia hemisphaerica | exon |
TCONS_00054843-exon-scaffold_245-1510915933:767598..767942 | TCONS_00054843-exon-scaffold_245-1510915933:767598..767942 | Clytia hemisphaerica | exon |
TCONS_00054843-exon-scaffold_245-1510915933:766111..767207 | TCONS_00054843-exon-scaffold_245-1510915933:766111..767207 | Clytia hemisphaerica | exon |
TCONS_00054843-exon-scaffold_245-1491911889:769061..769346 | TCONS_00054843-exon-scaffold_245-1491911889:769061..769346 | Clytia hemisphaerica | exon |
TCONS_00054843-exon-scaffold_245-1491911889:767598..767942 | TCONS_00054843-exon-scaffold_245-1491911889:767598..767942 | Clytia hemisphaerica | exon |
TCONS_00054843-exon-scaffold_245-1491911889:766111..767207 | TCONS_00054843-exon-scaffold_245-1491911889:766111..767207 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_245 | supercontig | scaffold_245:766111..769346 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
Term | Definition |
IPR027954 | DUF4430 |
Blast
The following BLAST results are available for this feature:
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