TCONS_00054847 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054847
Unique NameTCONS_00054847
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1685

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054847 ID=TCONS_00054847|Name=TCONS_00054847|organism=Clytia hemisphaerica|type=transcript|length=1685bp
GGACTTCTGGGCAGTGACCAGAAGAGCACCATCATTGGAATCGTGGTTGC
ATTTGCGCTTCTTTTAATCATTATCATCATCTTTGTCTGTTGGTACCGCC
GTCATTTAAAAGCCAAATACGCCAAATACCTTGAACCAAACGAAACTTTT
ATTCTCGATCCAGACCGTACTTTATTTGATCAAAGTAACGATCTTCCTTA
CGATATGTCATGGGAGTTTCCAAGGGAACGAGTCACCTTCATCAAAACAC
TTGGATCTGGTGCGTTTGGTCAAGTTTGGTTGGCTGAAGCTGAAGGCCTA
CATAGTTTCAAGCCAAGAGAGAACACGCCTGACGCACGACGACGAAGAAA
GTCTATACAGAAAGGACGAAATCGTTACCATTCAATGTCTTTTCGTTATA
AAAAACAaacgcaaaattttgagatgagTTTAGAGAAAATGATGGTCGCT
GTCAAAACTTTAAAAGATGGTGCAGCTGAAAGTGAGTATAAAGACTTAGC
ATCTGAACTCAAAATCTTGATCCATCTTGGTGAACACAAGAACATCGTCA
ACTTGTTGGGAGCTTGTACAACGGGTGGAAAGCTCTGTGTCATCCTTGAG
TGTTGTCCTCATGGTAGTTTGTTGAACTTCTTACGATCAAAACGTGATGT
TTTCAAACCAGCCTGGGCCAAACATGAGGTTGATATGGAAAAGGAATGCA
GTTATATTGATTTAGCGATGACTGCATGGCAAGTCTCCAAAGGAATGGAT
TTCTTACAAACTAAAAAGTTAATTCATAGAGATTTAGCAGCTCGCAACGT
TCTTGTTGGTGATGACTACATTATGAAGATTGCAGATTTCGGTTTGGCTC
GAGACATTTATGCTGATGAATTTTACCTCAAAAACACGACAGGTCTACTG
CCAATCAAATGGATGGCTCCTGAATCCATCTTCGATAGAGTTTATACAAC
TTCAAGTGATGTATGGTCGTATGGTATTTTATTATGGGAAATCTTCACAC
TGGGTGGATCACCTTACCCTGGTCTACCTACAGAAAATTTACGCGATTAT
CTTGAATCTGGTAGACGTATGGAGTGTCCGGAGCAGTGTCCGAAAGACAT
TTATGAAATCATGTTAGATTGTTGGGCAAAGAGTCCCTACGAAAGACCAT
TGTTCGCTCAAATTACCGAACGATTGAATAATTGTATGAAGCAGAATATA
TCAACTGGGGTAGGTTTGAGTTTTTTTGATTTACTTTCAATAATCTGAAG
TAAGGTTGAGGTGGCAAGTAATGATAACTTGTCTGAATTCTGTTCTTCAA
GTCATCAACGGTTGTTCTGTTTTTCCGATTATGTCCTACTTCAgttttcc
taaattttgataaatggaTAACTATACATTAACTCTATATTACATCAAAT
AAGCATCGTTAAACTataattttcaagatttaaagtgtGCATTTAATTTA
GAGGTTGGCACAAAACGGGGAAAAAGTAGTTTTTCGCTCCTATCTTTCAA
GCGTTTGAACTAACCAAACccttcaaacattttcatttagGACGCACCAC
AGAACTACTTAGATTTCACTGACGCTCAAGACAACTACTTACAACCAGAG
AAAGCAGCCAATCAACCACCACCTGAATATCTTCAAGCATCTGCTGGTGA
TGACAATCTCAAAGATGACGCCGATAGACCTCTAC
Run BLAST on NCBI

transcript from alignment at scaffold_245:788424..791710-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054847 ID=TCONS_00054847|Name=TCONS_00054847|organism=Clytia hemisphaerica|type=transcript|length=3287bp|location=Sequence derived from alignment at scaffold_245:788424..791710- (Clytia hemisphaerica)
GGACTTCTGGGCAGTGACCAGAAGAGCACCATCATTGGAATCGTGGTTGC
ATTTGCGCTTCTTTTAATCATTATCATCATCTTTGTCTGTTGGTACCGCC
GTCATTTAAAAGCCAAATACGCCAAATACCTTGAACCAAACGAAACTTTT
ATTGTATGTCTTTATTCTGTAAAAGTGTTACTTTGACGAGAAAGTTTTTC
TGAAATGATTTATCCTTTTGAGTTTCAAATAAAGTAAATGTCTAGGCCCA
CTTTGAGACTATACTCGTTAAATGACCAAAGTCAAAATATCATCTTTCTT
TATGGAAAACATTTCAGTGTCTCATAAACACCACTTTTTATGTTGAGTAG
TACGAGATTAGTCAACGATATCATTATCAAGGACTTCCCATTAAATGCCA
ACACCTATATATGTGCGCATTGACCTCAGTTTGGTAGAGAACTACTAACT
ACTATCTCACTTCAGTCCTCAGTTTAGTAGTTCTCTATCAAACTGAGGTC
AATGCGCACATATAAACGTGTTGGTACTTACGAGAGTAGTAATTTACGTT
ATTTTTCTAATATGTTAGCTCGATCCAGACCGTACTTTATTTGATCAAAG
TAACGATCTTCCTTACGATATGTCATGGGAGTTTCCAAGGGAACGAGTCA
CCTTCATCAAAACACTTGGATCTGGTGCGTTTGGTCAAGTTTGGTTGGCT
GAAGCTGAAGGCCTACATAGTATGTCATTTTGAAATTTTCTCTGATCCTC
CCCAAAGAGTAAAATCCATTTTTACCCTCGACTTCTGCAACTTGCATTTT
TAATTTGCAACTCGCGCTTTTGATTTGCAACTCAGACAGTACGTAACCCG
ACGTTTGCGACGACGGAAACTATGTAGTTTAATTCTTATGCTTTATGAGA
TAGATTATTTTAATGGTCAAATTTGAAAATATTTTAGCCAAAAGATGCAA
AAGATATCTTTGGGCATTAAAAAAATTGTTCCGTTCGGTCTCCCTCGAAG
CTCTACTTTAGTTGACCTAGGCCTAAAGACCTGGTTTATATAGAAACCCT
CGTCATTTTCATATCTCCAATTGAAAGTTTCCACCTCAATTCAATGTAGG
TTTCAAGCCAAGAGAGAACACGCCTGACGCACGACGACGAAGAAAGTCTA
TACAGAAAGGACGAAATCGTTACCATTCAATGTCTTTTCGTTATAAAAAA
CAAACGCAAAATTTTGAGATGAGTTTAGAGAAAATGATGGTCGCTGTCAA
AACTTTAAAAGGTACAAAATAATATTTTATTTGGTATGGATACTGTATAC
CTCTAAACCTAGAGTGTTGTTTCGTACTGTGACTCAGAACAACATCTTTT
TCTGATGAAGTACCAAAAAAGGAGCAAAAAAAATCACTTCGATGTAAAAG
TGATATTGGCTCCTAGCAAGGTAGGAAATCTTTTTGTGAGTACTTTTGTG
GGGCTAGCTATTTAATAACTGACTATGTAATCTGACTTGATTCGCTCTTC
CGAACTCATTTTTCGCCAACCAATCTATTTCTCACAGATGGTGCAGCTGA
AAGTGAGTATAAAGACTTAGCATCTGAACTCAAAATCTTGATCCATCTTG
GTGAACACAAGAACATCGTCAACTTGTTGGGAGCTTGTACAACGGGTGGA
AAGCTCTGTGTCATCCTTGAGTGTTGTCCTCATGGTAGTTTGTTGAACTT
CTTACGATCAAAACGTGATGTTTTCAAACCAGCCTGGGCCAAACATGAGG
TTGATATGGAAAAGGAATGCAGTTATATTGATTTAGCGATGACTGCATGG
CAAGTCTCCAAAGGAATGGATTTCTTACAAACTAAAAAGGTGCGTGGTTT
TTAATTTTTAAAGCAATATCCTTTTGACTTCTGATCCTTTTTGAAACTTT
TATGGCTCGTTTTATTCCCTTGCAAAACTAGTTGTAAGATTTGGTACTTA
TTTGGGCCGGACTGTCACCTAAAGCAATTTGCGAAGCAAGAGGTGGTTTC
GCTACGCTGGCCGATTTTCTTCAATGATTCGAACTCCCAAGCTTCTGACC
AAGTCAAGCTTACTACCCAACCAACGCCCCCTTGTAATTTTACAAGAATT
TTACATATAATTTTATTTTTTCATACAGTTAATTCATAGAGATTTAGCAG
CTCGCAACGTTCTTGTTGGTGATGACTACATTATGAAGATTGCAGATTTC
GGTTTGGCTCGAGACATTTATGCTGATGAATTTTACCTCAAAAACACGAC
AGGTCTACTGCCAATCAAATGGATGGCTCCTGAATCCATCTTCGATAGAG
TTTATACAACTTCAAGTGATGTGTGAGTCACGTGATTCAATTATAACTAA
TCTATAAAGCGAAGAACTCTAATAATGATTACATTTAAGTCAATGTTCTT
ACTCAACTCGACTGACTTTCTTTAAAGTTTCCGGTGTCAACTGTCATTAA
TTTTAATAACCCAGCTAACAGAAAAAAATAGTTTTAAAGAATTGAAAAGC
TTTTTTGTCGATTGATCTTCAGTAGTTTCGAACACAGAATTTTATCCCGA
TTTTTTCCATTTAGATGGTCGTATGGTATTTTATTATGGGAAATCTTCAC
ACTGGGTGGATCACCTTACCCTGGTCTACCTACAGAAAATTTACGCGATT
ATCTTGAATCTGGTAGACGTATGGAGTGTCCGGAGCAGTGTCCGAAAGAC
ATTTATGAAATCATGTTAGATTGTTGGGCAAAGAGTCCCTACGAAAGACC
ATTGTTCGCTCAAATTACCGAACGATTGAATAATTGTATGAAGCAGAATA
TATCAACTGGGGTAGGTTTGAGTTTTTTTGATTTACTTTCAATAATCTGA
AGTAAGGTTGAGGTGGCAAGTAATGATAACTTGTCTGAATTCTGTTCTTC
AAGTCATCAACGGTTGTTCTGTTTTTCCGATTATGTCCTACTTCAGTTTT
CCTAAATTTTGATAAATGGATAACTATACATTAACTCTATATTACATCAA
ATAAGCATCGTTAAACTATAATTTTCAAGATTTAAAGTGTGCATTTAATT
TAGAGGTTGGCACAAAACGGGGAAAAAGTAGTTTTTCGCTCCTATCTTTC
AAGCGTTTGAACTAACCAAACCCTTCAAACATTTTCATTTAGGACGCACC
ACAGAACTACTTAGATTTCACTGACGCTCAAGACAACTACTTACAACCAG
AGAAAGCAGCCAATCAACCACCACCTGAATATCTTCAAGCATCTGCTGGT
GATGACAATCTCAAAGATGACGCCGATAGACCTCTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034547XLOC_034547Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054847-exon-scaffold_245-1575043694:791558..791710TCONS_00054847-exon-scaffold_245-1575043694:791558..791710Clytia hemisphaericaexon
TCONS_00054847-exon-scaffold_245-1575043694:790992..791142TCONS_00054847-exon-scaffold_245-1575043694:790992..791142Clytia hemisphaericaexon
TCONS_00054847-exon-scaffold_245-1575043694:790450..790611TCONS_00054847-exon-scaffold_245-1575043694:790450..790611Clytia hemisphaericaexon
TCONS_00054847-exon-scaffold_245-1575043694:789872..790173TCONS_00054847-exon-scaffold_245-1575043694:789872..790173Clytia hemisphaericaexon
TCONS_00054847-exon-scaffold_245-1575043694:789389..789582TCONS_00054847-exon-scaffold_245-1575043694:789389..789582Clytia hemisphaericaexon
TCONS_00054847-exon-scaffold_245-1575043694:788424..789146TCONS_00054847-exon-scaffold_245-1575043694:788424..789146Clytia hemisphaericaexon
TCONS_00054847-exon-scaffold_245-1510915933:791558..791710TCONS_00054847-exon-scaffold_245-1510915933:791558..791710Clytia hemisphaericaexon
TCONS_00054847-exon-scaffold_245-1510915933:790992..791142TCONS_00054847-exon-scaffold_245-1510915933:790992..791142Clytia hemisphaericaexon
TCONS_00054847-exon-scaffold_245-1510915933:790450..790611TCONS_00054847-exon-scaffold_245-1510915933:790450..790611Clytia hemisphaericaexon
TCONS_00054847-exon-scaffold_245-1510915933:789872..790173TCONS_00054847-exon-scaffold_245-1510915933:789872..790173Clytia hemisphaericaexon
TCONS_00054847-exon-scaffold_245-1510915933:789389..789582TCONS_00054847-exon-scaffold_245-1510915933:789389..789582Clytia hemisphaericaexon
TCONS_00054847-exon-scaffold_245-1510915933:788424..789146TCONS_00054847-exon-scaffold_245-1510915933:788424..789146Clytia hemisphaericaexon
TCONS_00054847-exon-scaffold_245-1491911889:791558..791710TCONS_00054847-exon-scaffold_245-1491911889:791558..791710Clytia hemisphaericaexon
TCONS_00054847-exon-scaffold_245-1491911889:790992..791142TCONS_00054847-exon-scaffold_245-1491911889:790992..791142Clytia hemisphaericaexon
TCONS_00054847-exon-scaffold_245-1491911889:790450..790611TCONS_00054847-exon-scaffold_245-1491911889:790450..790611Clytia hemisphaericaexon
TCONS_00054847-exon-scaffold_245-1491911889:789872..790173TCONS_00054847-exon-scaffold_245-1491911889:789872..790173Clytia hemisphaericaexon
TCONS_00054847-exon-scaffold_245-1491911889:789389..789582TCONS_00054847-exon-scaffold_245-1491911889:789389..789582Clytia hemisphaericaexon
TCONS_00054847-exon-scaffold_245-1491911889:788424..789146TCONS_00054847-exon-scaffold_245-1491911889:788424..789146Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_245supercontigscaffold_245:788424..791710 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.43932	0.537315	2.53517	2.42267	1.67893	2.61664	4.67891	0.482675	2.02534	5.70035	3.84765	2.41154	6.45222	5.02953	3.57315	2.54259	7.90937	9.55463	5.29212	4.37891	3.2808	5.95514	3.8381	2.79921	7.19686	5.43108	7.60894	3.26166	3.17876	1.42083
Blast
[Close]
BLAST of TCONS_00054847 vs. Swiss-Prot (Human)
Match: FGFR4 (Fibroblast growth factor receptor 4 OS=Homo sapiens GN=FGFR4 PE=1 SV=2)

HSP 1 Score: 301.597 bits (771), Expect = 1.384e-91
Identity = 152/335 (45.37%), Postives = 201/335 (60.00%), Query Frame = 1 
Query:  184 SNDLPYDMSWEFPRERVTFIKTLGSGAFGQVWLAEAEGLHSFKPRENTPDARRRRKSIQKGRNRYHSMSFRYKKQTQNFEMSLEKMMVAVKTLKDGAAESEYKDLASELKILIHLGEHKNIVNLLGACTTGGKLCVILECCPHGSLLNFLRSKRDVFKPAWAKHEVDMEKECSYIDLAMTAWQVSKGMDFLQTKKLIHRDLAARNVLVGDDYIMKIADFGLARDIYADEFYLKNTTGLLPIKWMAPESIFDRVYTTSSDVWSYGILLWEIFTLGGSPYPGLPTENLRDYLESGRRMECPEQCPKDIYEIMLDCWAKSPYERPLFAQITERLNNCM 1188
            S DLP D  WEFPR+R+   K LG G FGQV  AEA G+   +P + +                                       VAVK LKD A++ +  DL SE++++  +G HKNI+NLLG CT  G L VI+EC   G+L  FLR++R              E   S+  L   A+QV++GM +L+++K IHRDLAARNVLV +D +MKIADFGLAR ++  ++Y K + G LP+KWMAPE++FDRVYT  SDVWS+GILLWEIFTLGGSPYPG+P E L   L  G RM+ P  CP ++Y +M +CW  +P +RP F Q+ E L+  +
Sbjct:  451 SLDLPLDPLWEFPRDRLVLGKPLGEGCFGQVVRAEAFGMDPARPDQAS--------------------------------------TVAVKMLKDNASDKDLADLVSEMEVMKLIGRHKNIINLLGVCTQEGPLYVIVECAAKGNLREFLRARRPPGPDLSPDGPRSSEGPLSFPVLVSCAYQVARGMQYLESRKCIHRDLAARNVLVTEDNVMKIADFGLARGVHHIDYYKKTSNGRLPVKWMAPEALFDRVYTHQSDVWSFGILLWEIFTLGGSPYPGIPVEELFSLLREGHRMDRPPHCPPELYGLMRECWHAAPSQRPTFKQLVEALDKVL 747
The following BLAST results are available for this feature:
BLAST of TCONS_00054847 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FGFR41.384e-9145.37Fibroblast growth factor receptor 4 OS=Homo sapien... [more]
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