TCONS_00054929 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054929
Unique NameTCONS_00054929
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1122

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054929 ID=TCONS_00054929|Name=TCONS_00054929|organism=Clytia hemisphaerica|type=transcript|length=1122bp
TGTCAAAGGGTTAAAAAAGATGTCCAACACTGAAAAAGAAGGACTTTTAA
ATCAAATTCCAAATCGCATATTTGAATGCATACAAAGGCAGACCTTACGT
TGATTTTACAGATTGGGTAGAATGTGCTGAGTTAAATGGTATTAAATTCA
ACGTTACTGCCTATAAAAACCGTACACAATGCACAGAATTCGTAAATGTC
ATTAGTGAGACAATATTTGAGGAAGATGTcaagaaaaaactgaaaaattc
aaacttcaTTTCTGTATTTTGCGATGGAAGTACTGATTCTGCTGTCATTG
AAAAGGAATGTGTGTACCTGATGTTTGTTGACCTCACTGAATTCGAGCCT
ACTCTTTCATTCATTGCTTTGAAAGATGTTCCCAGTCAGGACGCAGCAGG
AATCAAAAGTGCTCTCACAAAGGCTTTTGATGACGTGGGAATGCCAGAAC
TAAAGGATAAAATCGTTTTTTTAGCCAGCGATGGTGCCAGTGTAAATAGT
GGTATTAAAACAGGACTTGCAGCTAAATTTCGAGAGGATGGTCTTGAATG
GCTTGTTTTTGTATGGTGTCTGTCACATAGACTTGAATTAGCATTAAAGG
ATAGTCTTGATGATGTTCTAGCTCCTGTTAAAAAAAGCTTGACAAATCTT
TTCTACCTTTATCAGAAATCATCGAAAAAGTTAAGAGAATTACGTAAGCT
ACATAAAGTATTGAAAGAAATGTACGAGTTTGCTGATAATTGTGTCAAGC
CAGCAAAGGCAACTGGAACACGTTGGATTGCCCATGTACTACGCAGCATG
TCTGGATTGGTTGACAAATTCGGACTTTATTTGCAGCACTTTGAAAATGT
AATTGCTGACACCTCAAAACAGACGGATAAAGCAACTTTAGAAGGAAAGA
GGAGACTGTTAACTGAGGCAAATGTTTTACTCCGATGTGGTCTATTTATT
GATCTGTTAAATCCAGCATTGAAATTTAGTCTTCAATctcaaaaggaaaa
ttttggaatcatTGAATTAGTTGATGAGTTAGATGACATGTTCCTGGCGT
ATTTCCTTATGAAAAGGCGATTCGAGAAAAATCCTGAACTATTTTCAATC
TACCAAACCTACAAAAAGCTTT
Run BLAST on NCBI

protein sequence of TCONS_00054929-protein

>TCONS_00054929-protein ID=TCONS_00054929-protein|Name=TCONS_00054929-protein|organism=Clytia hemisphaerica|type=polypeptide|length=267bp
MFVDLTEFEPTLSFIALKDVPSQDAAGIKSALTKAFDDVGMPELKDKIVF
LASDGASVNSGIKTGLAAKFREDGLEWLVFVWCLSHRLELALKDSLDDVL
APVKKSLTNLFYLYQKSSKKLRELRKLHKVLKEMYEFADNCVKPAKATGT
RWIAHVLRSMSGLVDKFGLYLQHFENVIADTSKQTDKATLEGKRRLLTEA
NVLLRCGLFIDLLNPALKFSLQSQKENFGIIELVDELDDMFLAYFLMKRR
FEKNPELFSIYQTYKKL
Run BLAST on NCBI

transcript from alignment at scaffold_246:263057..264178

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054929 ID=TCONS_00054929|Name=TCONS_00054929|organism=Clytia hemisphaerica|type=transcript|length=1122bp|location=Sequence derived from alignment at scaffold_246:263057..264178 (Clytia hemisphaerica)
AAAGCTTTTTGTAGGTTTGGTAGATTGAAAATAGTTCAGGATTTTTCTCG
AATCGCCTTTTCATAAGGAAATACGCCAGGAACATGTCATCTAACTCATC
AACTAATTCAatgattccaaaattttccttttgagATTGAAGACTAAATT
TCAATGCTGGATTTAACAGATCAATAAATAGACCACATCGGAGTAAAACA
TTTGCCTCAGTTAACAGTCTCCTCTTTCCTTCTAAAGTTGCTTTATCCGT
CTGTTTTGAGGTGTCAGCAATTACATTTTCAAAGTGCTGCAAATAAAGTC
CGAATTTGTCAACCAATCCAGACATGCTGCGTAGTACATGGGCAATCCAA
CGTGTTCCAGTTGCCTTTGCTGGCTTGACACAATTATCAGCAAACTCGTA
CATTTCTTTCAATACTTTATGTAGCTTACGTAATTCTCTTAACTTTTTCG
ATGATTTCTGATAAAGGTAGAAAAGATTTGTCAAGCTTTTTTTAACAGGA
GCTAGAACATCATCAAGACTATCCTTTAATGCTAATTCAAGTCTATGTGA
CAGACACCATACAAAAACAAGCCATTCAAGACCATCCTCTCGAAATTTAG
CTGCAAGTCCTGTTTTAATACCACTATTTACACTGGCACCATCGCTGGCT
AAAAAAACGATTTTATCCTTTAGTTCTGGCATTCCCACGTCATCAAAAGC
CTTTGTGAGAGCACTTTTGATTCCTGCTGCGTCCTGACTGGGAACATCTT
TCAAAGCAATGAATGAAAGAGTAGGCTCGAATTCAGTGAGGTCAACAAAC
ATCAGGTACACACATTCCTTTTCAATGACAGCAGAATCAGTACTTCCATC
GCAAAATACAGAAAtgaagtttgaatttttcagttttttcttgACATCTT
CCTCAAATATTGTCTCACTAATGACATTTACGAATTCTGTGCATTGTGTA
CGGTTTTTATAGGCAGTAACGTTGAATTTAATACCATTTAACTCAGCACA
TTCTACCCAATCTGTAAAATCAACGTAAGGTCTGCCTTTGTATGCATTCA
AATATGCGATTTGGAATTTGATTTAAAAGTCCTTCTTTTTCAGTGTTGGA
CATCTTTTTTAACCCTTTGACA

Coding sequence (CDS) from alignment at scaffold_246:263057..264178

>TCONS_00054929 ID=TCONS_00054929|Name=TCONS_00054929|organism=Clytia hemisphaerica|type=CDS|length=801bp|location=Sequence derived from alignment at scaffold_246:263057..264178 (Clytia hemisphaerica)
AAGCTTTTTGTAGGTTTGGTAGATTGAAAATAGTTCAGGATTTTTCTCGA
ATCGCCTTTTCATAAGGAAATACGCCAGGAACATGTCATCTAACTCATCA
ACTAATTCAatgattccaaaattttccttttgagATTGAAGACTAAATTT
CAATGCTGGATTTAACAGATCAATAAATAGACCACATCGGAGTAAAACAT
TTGCCTCAGTTAACAGTCTCCTCTTTCCTTCTAAAGTTGCTTTATCCGTC
TGTTTTGAGGTGTCAGCAATTACATTTTCAAAGTGCTGCAAATAAAGTCC
GAATTTGTCAACCAATCCAGACATGCTGCGTAGTACATGGGCAATCCAAC
GTGTTCCAGTTGCCTTTGCTGGCTTGACACAATTATCAGCAAACTCGTAC
ATTTCTTTCAATACTTTATGTAGCTTACGTAATTCTCTTAACTTTTTCGA
TGATTTCTGATAAAGGTAGAAAAGATTTGTCAAGCTTTTTTTAACAGGAG
CTAGAACATCATCAAGACTATCCTTTAATGCTAATTCAAGTCTATGTGAC
AGACACCATACAAAAACAAGCCATTCAAGACCATCCTCTCGAAATTTAGC
TGCAAGTCCTGTTTTAATACCACTATTTACACTGGCACCATCGCTGGCTA
AAAAAACGATTTTATCCTTTAGTTCTGGCATTCCCACGTCATCAAAAGCC
TTTGTGAGAGCACTTTTGATTCCTGCTGCGTCCTGACTGGGAACATCTTT
CAAAGCAATGAATGAAAGAGTAGGCTCGAATTCAGTGAGGTCAACAAACA
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034616XLOC_034616Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054929-proteinTCONS_00054929-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054929-exon-scaffold_246-1491911889:263057..264178TCONS_00054929-exon-scaffold_246-1491911889:263057..264178Clytia hemisphaericaexon
TCONS_00054929-exon-scaffold_246-1510915933:263057..264178TCONS_00054929-exon-scaffold_246-1510915933:263057..264178Clytia hemisphaericaexon
TCONS_00054929-exon-scaffold_246-1575043694:263057..264178TCONS_00054929-exon-scaffold_246-1575043694:263057..264178Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_246supercontigscaffold_246:263057..264178 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.385459	0.157355	0.938057	0.235549	1.01746	0.605082	1.85341	2.52482	0.635188	2.04615	0.587373	1.05741	0.862026	0.741784	0.629162	0.278809	0.0994429	0.225175	1.15652	0.997934	0.188819	0.470793	0.231534	0	0.125162	0.134573	0.222492	0.113554	0.956196	1.2344
Blast
[Close]
BLAST of TCONS_00054929 vs. Swiss-Prot (Human)
Match: ZN862 (Zinc finger protein 862 OS=Homo sapiens GN=ZNF862 PE=2 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 4.735e-23
Identity = 95/347 (27.38%), Postives = 167/347 (48.13%), Query Frame = 3 
Query:   57 FQIAYLNAYKGRPYVDFTDWVECAELNGIKFNVTAYKNRTQCTEFVNVISETIFEEDVKKKLKNSNFISVFCDGSTDSAVIEKECVYLMFVDLTEFEPTLSFIALKDVPSQDAAGIKSALTKAFDDVGMPELKDK-IVFLASDGASVNSGIKTGLAAKFREDGLEWLVFVWCLSHRLELALKDSLD--DVLAPVKKSLTNLFYLYQXXXXXXXXXXXXXXXXXXMYEFADNCVKPAKATGTRWIAHVLRSMSGLVDKFGLYLQHFENVIADTSKQTDKATLEGKRRLLTEANVLLRCGLFIDLLNPALKFSLQSQKENFGIIELVDELDDMFLAYFLMKRRFEKNPE 1088
            F  AY  AY  RP  DF   ++  +  G    +  Y+NRT CT+F+  ISET+ + ++ + ++NS  +SV  D STD++  E+ CV +      + E   S+I L  + S+ A G    +  A D++ +P  K   +V L +DG+++ S  + GL  KF+E  +  L+ V C++HRL LA+ D+    D++    + +  +F  YQ S+K+L EL++               ++       RW+A   R++  L+  +    +H + V     +   +A  +G  +L+   + +  C   +D L+     S   QKE   I E+   L   ++A  L   R +  P+
Sbjct:  559 FNAAYSIAYHSRPLNDFEKILQLLQSTGTVI-LGKYRNRTACTQFIKYISETL-KREILEDVRNSPCVSVLLDSSTDAS--EQACVGIYIRYFKQMEVKESYITLAPLYSETADGYFETIVSALDELDIPFRKPGWVVGLGTDGSAMLS-CRGGLVEKFQEV-IPQLLPVHCVAHRLHLAVVDACGSIDLVKKCDRHIRTVFKFYQSSNKRLNELQEGAA------PLEQEIIRLKDLNAVRWVASRRRTLHALLVSWPALARHLQRVAEAGGQIGHRA--KGMLKLMRGFHFVKFCHFLLDFLSIYRPLSEVCQKEIVLITEVNATLGRAYVA--LESLRHQAGPK 889
The following BLAST results are available for this feature:
BLAST of TCONS_00054929 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZN8624.735e-2327.38Zinc finger protein 862 OS=Homo sapiens GN=ZNF862 ... [more]
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