TCONS_00054930 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054930
Unique NameTCONS_00054930
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length833

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054930 ID=TCONS_00054930|Name=TCONS_00054930|organism=Clytia hemisphaerica|type=transcript|length=833bp
CCCTTACTGTTGCCTAATCTTAGGACTGGACGACAGTAACAGTAAAAACA
CTATCGATACACGACATGGTTATGTATGACAGAGCTTTTATTTGCTGAAT
ACGACAAACCCATAATGcttaacttgaaaaattgatATAGATATTTAAAA
TGGCAGCTTTCAGTTTGAGAAACTTCAACAAAGAACGAATTGGTATTCTT
GAATCTATATTTGAGTCAACGGATTTTCTCAAGAATATCTACAGTGACAA
CGCTAAAAGCAATGATCTCAAGGTCCAGATGTATCAGTGGGAGCGTGAAA
GATTGGTACGCATCCTGAAGAGGTATAGAGATTTGCTGGTTAAATATCGT
CCTTCACTCAAAATGTTATCAGACAGAGGTTCTGAAGAAGTTAGTGTTTG
TGAGGGCGTTATTCGTGGTGCTCTTGATGTCATTGACGCTGCACCTAGTC
ACTTACGTAAGTTAAAGAATATCAATGCCACGTCAAATCGTATTTGTGTT
GAGGTTGTTAATGAAGTCAAACCCGTAGTTGTAAACGCTGTCAATGAAAT
TACAGAAGTTGTCTTAACTGCAGTTAAACGGACTTCATTAGCAGTTCCTA
AACGTGTTGTCACCTTGAGTAAAGAGAGTCAGAACATCTCACAACCTGTT
GTTGTAAAGAAGCCAAGCATTCAAGTTGCTGTTTTGTCAAAAGTGGAAGT
CAATCGAACTGAACCGAACTATTTACCGTGTATCGAAGTCAATGCTTGTT
TTGTTCCTGTAAAGGATACATATCGCAAACCAGTTGTCCCCGTAAATatc
gaaaatattgaaaagtctACTGTGAAGAAGATT
Run BLAST on NCBI

protein sequence of TCONS_00054930-protein

>TCONS_00054930-protein ID=TCONS_00054930-protein|Name=TCONS_00054930-protein|organism=Clytia hemisphaerica|type=polypeptide|length=228bp
MAAFSLRNFNKERIGILESIFESTDFLKNIYSDNAKSNDLKVQMYQWERE
RLVRILKRYRDLLVKYRPSLKMLSDRGSEEVSVCEGVIRGALDVIDAAPS
HLRKLKNINATSNRICVEVVNEVKPVVVNAVNEITEVVLTAVKRTSLAVP
KRVVTLSKESQNISQPVVVKKPSIQVAVLSKVEVNRTEPNYLPCIEVNAC
FVPVKDTYRKPVVPVNIENIEKSTVKKI
Run BLAST on NCBI

transcript from alignment at scaffold_246:266821..267653

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054930 ID=TCONS_00054930|Name=TCONS_00054930|organism=Clytia hemisphaerica|type=transcript|length=833bp|location=Sequence derived from alignment at scaffold_246:266821..267653 (Clytia hemisphaerica)
AATCTTCTTCACAGTagacttttcaatattttcgatATTTACGGGGACAA
CTGGTTTGCGATATGTATCCTTTACAGGAACAAAACAAGCATTGACTTCG
ATACACGGTAAATAGTTCGGTTCAGTTCGATTGACTTCCACTTTTGACAA
AACAGCAACTTGAATGCTTGGCTTCTTTACAACAACAGGTTGTGAGATGT
TCTGACTCTCTTTACTCAAGGTGACAACACGTTTAGGAACTGCTAATGAA
GTCCGTTTAACTGCAGTTAAGACAACTTCTGTAATTTCATTGACAGCGTT
TACAACTACGGGTTTGACTTCATTAACAACCTCAACACAAATACGATTTG
ACGTGGCATTGATATTCTTTAACTTACGTAAGTGACTAGGTGCAGCGTCA
ATGACATCAAGAGCACCACGAATAACGCCCTCACAAACACTAACTTCTTC
AGAACCTCTGTCTGATAACATTTTGAGTGAAGGACGATATTTAACCAGCA
AATCTCTATACCTCTTCAGGATGCGTACCAATCTTTCACGCTCCCACTGA
TACATCTGGACCTTGAGATCATTGCTTTTAGCGTTGTCACTGTAGATATT
CTTGAGAAAATCCGTTGACTCAAATATAGATTCAAGAATACCAATTCGTT
CTTTGTTGAAGTTTCTCAAACTGAAAGCTGCCATTTTAAATATCTATatc
aatttttcaagttaagCATTATGGGTTTGTCGTATTCAGCAAATAAAAGC
TCTGTCATACATAACCATGTCGTGTATCGATAGTGTTTTTACTGTTACTG
TCGTCCAGTCCTAAGATTAGGCAACAGTAAGGG

Coding sequence (CDS) from alignment at scaffold_246:266821..267653

>TCONS_00054930 ID=TCONS_00054930|Name=TCONS_00054930|organism=Clytia hemisphaerica|type=CDS|length=684bp|location=Sequence derived from alignment at scaffold_246:266821..267653 (Clytia hemisphaerica)
AATCTTCTTCACAGTagacttttcaatattttcgatATTTACGGGGACAA
CTGGTTTGCGATATGTATCCTTTACAGGAACAAAACAAGCATTGACTTCG
ATACACGGTAAATAGTTCGGTTCAGTTCGATTGACTTCCACTTTTGACAA
AACAGCAACTTGAATGCTTGGCTTCTTTACAACAACAGGTTGTGAGATGT
TCTGACTCTCTTTACTCAAGGTGACAACACGTTTAGGAACTGCTAATGAA
GTCCGTTTAACTGCAGTTAAGACAACTTCTGTAATTTCATTGACAGCGTT
TACAACTACGGGTTTGACTTCATTAACAACCTCAACACAAATACGATTTG
ACGTGGCATTGATATTCTTTAACTTACGTAAGTGACTAGGTGCAGCGTCA
ATGACATCAAGAGCACCACGAATAACGCCCTCACAAACACTAACTTCTTC
AGAACCTCTGTCTGATAACATTTTGAGTGAAGGACGATATTTAACCAGCA
AATCTCTATACCTCTTCAGGATGCGTACCAATCTTTCACGCTCCCACTGA
TACATCTGGACCTTGAGATCATTGCTTTTAGCGTTGTCACTGTAGATATT
CTTGAGAAAATCCGTTGACTCAAATATAGATTCAAGAATACCAATTCGTT
CTTTGTTGAAGTTTCTCAAACTGAAAGCTGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034617XLOC_034617Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054930-exon-scaffold_246-1491911889:266821..267653TCONS_00054930-exon-scaffold_246-1491911889:266821..267653Clytia hemisphaericaexon
TCONS_00054930-exon-scaffold_246-1510915933:266821..267653TCONS_00054930-exon-scaffold_246-1510915933:266821..267653Clytia hemisphaericaexon
TCONS_00054930-exon-scaffold_246-1575043694:266821..267653TCONS_00054930-exon-scaffold_246-1575043694:266821..267653Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054930-proteinTCONS_00054930-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_246supercontigscaffold_246:266821..267653 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.42138	1.88506	1.59467	1.63749	0.383363	0.181763	0.146193	0.0684321	0.335376	0.0647781	0.460817	0.0757307	1.17219	1.88491	0.677971	0.17323	0.469492	0.0437468	0.181316	0	0.109942	0.283755	0.586703	0.79595	0.549388	0.926151	0.3898	0.249603	0.37863	0.257176
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054930 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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