TCONS_00054934 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054934
Unique NameTCONS_00054934
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length567

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054934 ID=TCONS_00054934|Name=TCONS_00054934|organism=Clytia hemisphaerica|type=transcript|length=567bp
TGCGTATCGGACACCAACATGTGAAACAGTTATTGTATCAGAAGTGCCAA
ACATTATTTTagatgatgaaaatgcaattttagctcCAGGTGAAGGTCAA
ACCCGCAATTCATTAACACAAGATGAGTTCTGTGAAGAGTTAGCCCATCC
TCATCTTTTTCCTACTGGGAAATTTGATTATAACGTAGAGCGAGATATAA
AATTGTCGCCAACAAAGTACTTTAATCAGCGTCTTTTGAATTAcactcaa
aagtttgcttcggATTCAGATTACATTCTTTTTGCTCACAAAACTTTACT
ACAGCTTAATCTTAGAAGTAAGATCAATATCGCAATGAGAATTTCAAATA
CCAACTTGACTGCGGGACTATTAGCAAATAATTTTAATGATACAATTCAA
AATTGTGTAGCGTCTGATAATGCATACAAGTTTATGAGTACTATAAAAGG
AACCCCTGCATACTNTAGCATCTGATAATGCATACAAGTTTATGAGTACT
ATAAAAGGAACCCCTGCATACTGGCAACATATGTTATCTGATGTTCTTGC
AATGGCTAAACAACTTG
Run BLAST on NCBI

transcript from alignment at scaffold_246:304628..305194

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054934 ID=TCONS_00054934|Name=TCONS_00054934|organism=Clytia hemisphaerica|type=transcript|length=567bp|location=Sequence derived from alignment at scaffold_246:304628..305194 (Clytia hemisphaerica)
CAAGTTGTTTAGCCATTGCAAGAACATCAGATAACATATGTTGCCAGTAT
GCAGGGGTTCCTTTTATAGTACTCATAAACTTGTATGCATTATCAGATGC
TANAGTATGCAGGGGTTCCTTTTATAGTACTCATAAACTTGTATGCATTA
TCAGACGCTACACAATTTTGAATTGTATCATTAAAATTATTTGCTAATAG
TCCCGCAGTCAAGTTGGTATTTGAAATTCTCATTGCGATATTGATCTTAC
TTCTAAGATTAAGCTGTAGTAAAGTTTTGTGAGCAAAAAGAATGTAATCT
GAATccgaagcaaacttttgagtgTAATTCAAAAGACGCTGATTAAAGTA
CTTTGTTGGCGACAATTTTATATCTCGCTCTACGTTATAATCAAATTTCC
CAGTAGGAAAAAGATGAGGATGGGCTAACTCTTCACAGAACTCATCTTGT
GTTAATGAATTGCGGGTTTGACCTTCACCTGgagctaaaattgcattttc
atcatctAAAATAATGTTTGGCACTTCTGATACAATAACTGTTTCACATG
TTGGTGTCCGATACGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034621XLOC_034621Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054934-exon-scaffold_246-1491911889:304628..305194TCONS_00054934-exon-scaffold_246-1491911889:304628..305194Clytia hemisphaericaexon
TCONS_00054934-exon-scaffold_246-1510915933:304628..305194TCONS_00054934-exon-scaffold_246-1510915933:304628..305194Clytia hemisphaericaexon
TCONS_00054934-exon-scaffold_246-1575043694:304628..305194TCONS_00054934-exon-scaffold_246-1575043694:304628..305194Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_246supercontigscaffold_246:304628..305194 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.46189	0.444165	0	0.896019	0.241587	0.22552	0.382225	0	0.120675	0	0	0.191137	0.189664	0.0976956	0.408337	0	0.154565	0.124474	0.181066	0	0.524544	0.862368	0.25204	0.510221	0.562459	0	0.334163	0.607114	0.247948	1.06758
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054934 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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