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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054936 ID=TCONS_00054936|Name=TCONS_00054936|organism=Clytia hemisphaerica|type=transcript|length=2470bp TTGGCATAGTCTGTTAAATACAAGCTTTGTGTGTATGTATACTGGTATAT AAAAGCAAATCATTTGTCATTTTATTTGTTGTTCGTTTGTCAACACTGTT GATTTAggattttgttttaaaagtcAACAAACGCATCAATCGAAACAAAA AGAAGGACAAATTTTTAGTTTAAGAAAGGGGGTAATAAAGCAACGAGTAT TTTTGCTATTGTGTGTATGTGTATGTATGAGTTCATGTGATATTTGACGC TCCTTGGATAAGAGAAtgacaaaaaaggatttttttaagTAAGCATTTGT TGTGATGAAAGTAGAGACGACTAGAAGACACATGGAGCAGTGAAACAAGA GACTTTGAGCTGACCATTTTTTTTTGTGATGGAAAATTGAGACgaagaaa atatataatttgAGAAGGGACAAAACATTATCATCAATACAAAAAACGGT TTAGAAAGGACAATTGTTGTAAGCGAATAACAAAGACAGAAAGTCCAGTA AAAAGAAAGCACAGAGGATCTTTTTTTGTGTTGTTTGGTATATACAGTTA TTTGATATTTAATATATCCCAAAACTTAATACCCTCTTTTTTAGAGGTTT TGGAGTGAGCCATTatcggcaatttgattggtcacgtccaaatacaaaaa aattacagttcaAGAAATTTGAAACTGTGTAAGTCAATCCCCTCTGTGTC TTGGAAAACGTCACGAGTCCCTAAAAAGACTGCATAGAAAATACATCAAA ATAAATATCATCAAAAAAAGAGAAGTTAGGGTAAGAAATAAGAGAAGATA TTGTATGTAAAAAAAAGTGTGAATCCTGTGGAGAAATAATGAGTACCACT ACTTTCGATACTGCAGAAATTCAAAAACATGCTAATGTCGTTATGAACTA TACTGCTGAGCAGATTGAATGTGTTTGTGACGCTCTTATACAAAGCCAGA ATTATGACACCTTGGCCAAATTGTTGTGGTCGTTGCCTAGGAACGAGATG AACCATAGCAGCGAGTGTATATTGAAGAGCCGAGCTTACGTTGCTTTACA CCAAGGACGATTCAGAGACTTGTATACACTCTTAGAAAGCCATGATTTCG ATCCTGACTTGCACCCAGTAATGCAGCAAATGTGGCATGATGCACATTAC CTAGAAGCAGAGAAAATCCGTGGACGACCGTTAGGCGCTGTTGAGAAATA TCGAATCAGGCGCAAATACCCATTACCTAGAACCATTTGGGACGGTGAAG AGACAGTTTACTGTTTCAAGGAAAAGTCAAGACAGGTGTTAAAAGACTGG TATGATAAGAATAAGTACCCTACACCACAGGATAAACGTATTTTAGCTAA ACGTACAGAGCTGACTTTGGTCCAAGTTTCAAATTGGTTCAAGAACAGAC GACAGCGTGATAAACCGAACGGCGAAGGAGAAGAAGAGAAGATTGGGAGA TCCATCAGTGTGGAGCCATGGTCAACCTCATTGAACGTTCCCTACcttaa caacaacaacaacaccacaaacaacaacaataataattTACCCAACAACA ATTATCTCATGTCTACTACAAAAGACAATCTGAAAAATTCCAAAACGAAT GTTGGTTATCCAGATACGGTTTCTGTACATCCACACGATGCAGTCAAACA ATCACCGTCATATTTCGCTGACATAAGTTGCTCGATGTAATTTGGTCGTT TGAACAACACTTCTCTGAAATATACCAGAAATATGATTCATCCATTTTTA TTGACTCGATAAATTTAAATGTTGAATTAGACGAAAAAATTGTATTTGGC ATAGCAATGGTTTTTTTGTCTTATGATAAATTTCATGCTGGATACTTTTC TTGGTGATGTTCCTAACTGGAATAAACAATGTTGTTTCGATATAATGTGA TGGGTGTTGTTCTGACCTTTTCGTGACAGCTCAATGGACGTCACATTAGA GGTGCCCAGGGACAAGCATCGTTTCTGAATTGTAAAGTTTCAGAAAAGGA GAACATTTATAACAGGTATCTTGAGGTACCAAATGATTCCCAaagtaaaa gaagaaattcaacaaattgaatttttaaatgtttGTGACGTAGGATTTTA TTAAGTACTCAAAGAGTCTAAATAGCGGTTAATTAggatataaatatttt tttcgtttAAATAAGATAATAATAATAGCAGATTGCTTTGTAAGTATCGC ATAATTATATCATTAAGAATCATCGCagaattttatcatatttttagcat tttaggGCTcacattgattttgatattatttttttgggtaAAATGTATTT TGTCTTGAAGAGACACTATATGGTAGTAAATATAGTTTTGGGGAATTTAA GTCTGTAAATATTTAATAGATATTATATTAAGGAATAATACTTGTTTTAA ATTGTAATTGGACAATCCACCCTTATCTGACAACAAAACTTGTTGTGAGG TAAAACTTTTCCTCACAGCG Run BLAST on NCBI protein sequence of Six4/5 >TCONS_00054936-protein ID=TCONS_00054936-protein|Name=Six4/5|organism=Clytia hemisphaerica|type=polypeptide|length=283bp
MSTTTFDTAEIQKHANVVMNYTAEQIECVCDALIQSQNYDTLAKLLWSLP RNEMNHSSECILKSRAYVALHQGRFRDLYTLLESHDFDPDLHPVMQQMWH DAHYLEAEKIRGRPLGAVEKYRIRRKYPLPRTIWDGEETVYCFKEKSRQV LKDWYDKNKYPTPQDKRILAKRTELTLVQVSNWFKNRRQRDKPNGEGEEE KIGRSISVEPWSTSLNVPYLNNNNNTTNNNNNNLPNNNYLMSTTKDNLKN SKTNVGYPDTVSVHPHDAVKQSPSYFADISCSM Run BLAST on NCBI transcript from alignment at scaffold_247:26943..32141+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054936 ID=TCONS_00054936|Name=TCONS_00054936|organism=Clytia hemisphaerica|type=transcript|length=5199bp|location=Sequence derived from alignment at scaffold_247:26943..32141+ (Clytia hemisphaerica) TTGGCATAGTCTGTTAAATACAAGCTTTGTGTGTATGTATACTGGTATAT
AAAAGCAAATCATTTGTCATTTTATTTGTTGTTCGTTTGTCAACACTGTT
GATTTAggattttgttttaaaagtcAACAAACGCATCAATCGAAACAAAA
AGAAGGACAAATTTTTAGTTTAAGAAAGGGGGTAATAAAGCAACGAGTAT
TTTTGCTATTGTGTGTATGTGTATGTATGAGTTCATGTGATATTTGACGC
TCCTTGGATAAGAGAAtgacaaaaaaggatttttttaagTAAGCATTTGT
TGTGATGAAAGTAGAGACGACTAGAAGACACATGGAGCAGTGAAACAAGA
GACTTTGAGCTGACCATTTTTTTTTGTGATGGAAAATTGAGACgaagaaa
atatataatttgAGAAGGGACAAAACATTATCATCAATACAAAAAACGGT
TTAGAAAGGACAATTGTTGTAAGCGAATAACAAAGACAGAAAGTCCAGTA
AAAAGAAAGCACAGAGGATCTTTTTTTGTGTTGTTTGGTATATACAGTTA
TTTGATATTTAATATATCCCAAAACTTAATACCCTCTTTTTTAGAGGTTT
TGGAGTGAGCCATTatcggcaatttgattggtcacgtccaaatacaaaaa
aattacagttcaAGAAATTTGAAACTGTGTAAGTCAATCCCCTCTGTGTC
TTGGAAAACGTCACGAGTCCCTAAAAAGACTGCATAGAAAATACATCAAA
ATAAATATCATCAAAAAAAGAGAAGTTAGGGTAAGAAATAAGAGAAGATA
TTGTATGTAAAAAAAAGTGTGAATCCTGTGGAGAAATAATGAGTACCACT
ACTTTCGATACTGCAGAAATTCAAAAACATGCTAATGTCGTTATGAACTA
TACTGCTGAGCAGATTGAATGTGTTTGTGACGCTCTTATACAAAGCCAGA
ATTATGACACCTTGGCCAAATTGTTGTGGTCGTTGCCTAGGAACGAGATG
AACCATAGCAGCGAGTGTATATTGAAGAGCCGAGCTTACGTTGCTTTACA
CCAAGGACGATTCAGAGACTTGTATACACTCTTAGAAAGCCATGATTTCG
ATCCTGACTTGCACCCAGTAATGCAGCAAATGTGGCATGATGCACATTAC
CTAGAAGCAGAGAAAATCCGTGGACGACCGTTAGGCGCTGTTGAGAAATA
TCGAATCAGGCGCAAATACCCATTACCTAGAACCATTTGGGACGGTGAAG
AGACAGTTTACTGTTTCAAGGAAAAGTCAAGACAGGTGTTAAAAGACTGG
TATGATAAGAATAAGTACCCTACACCACAGGATAAACGTATTTTAGCTAA
ACGTACAGAGCTGACTTTGGTCCAAGTTTCAAATTGGTTCAAGAACAGAC
GACAGCGTGATAAACCGAACGGCGAAGGAGAAGAAGAGAAGATTGGGAGG
TAGGTAATATATCATTTCAATCTCACCAGCACGTGCCAATATTTTTCGTT
TAGAATTTCTtcttaaaaaatgtaaattcgCTAAGTGCAGGTCAGTAGAT
GAGAAGAGGATTCTAGCTCACCTCACACTACTCCCTTGTAACTAGGATAA
AGCCAGTTGACCCCCCCAGTTGAATTttacaaatgaaataaaaacagTTA
CTTTTAAGGGCCATGAGGATTGCAAAAGATCTGATCGAACCCAAAAAAAC
AGGGGTGTATTGGCTATGTAGTTAATTTTAATTAACTTTGATTAGTCATT
GACTATAAGGATATTTTCTTTCGGCACGGACCTTTAAAGACTTGTGGAAC
ATTTAGAACCTTATTGATTACTTTAAAGCCATGAGGGAGGTCCTGATAAT
CAATTGTTACAAAAGAGACCACACCCTTATTGAATTCTTTATGCAAATTT
TAAAGTAAcacatgtttttaaaaatttcacttcTGTGATATGATGAGTTT
TCAATATGTATTGCTTTTTATTTGTTGAAGAGGATTAAGGCGAAAGTGAT
GGTTTTAAAGCTTCAAAGCCACAACCTCAATCTTGTTGATTTAACAAAAG
TAATGTACGTTCTAACATGAATAAGAGGCTGGTCTGGTATTTGCAATTCA
AATAGAAGATGGAATTCACCTTATGGCCTTGAAAGCAGGAGGATATGCTT
AAAAGATATTAAACTCTTTTTTATTACAGACCTTAAAAAGTTCATAAGTT
TTACAAGGCCTGCCAGAGAAAGTTAAAGGCCATTGGAACTTTCGAAAGGT
CATTTGGACTATTGCAACAACGCAACTTTTATTCATCTGGAGAAAAAGGA
GagaatttgctttttttttaaatcatgtaACCCAAGTTTTTATCTTATAT
CCCCAGAGTAAATTTCGACCTCtttttaccaaatttcatcGGGATAATCA
TAGCAATCAATTCAATGAGATAATTGATACAGGGGTTGATGTAATTGAAA
AGCAAAACAGAGAAATTAACCATTACTACAATTTGATACAGGGATGAAAG
TATAATCCCAGCTAATCAcacaaccccttctcacagatccactgggaccc
cttcccactggaaaaattggccaaaatattgtctcCGATGGAAAActatc
ctccaatttttatcaccactgaaaatgatcaaataaaccaatcctcactg
taaagtattatgctatttttcccatccccactgaattttctgacttgaaa
acacaCGAATcatgaaatccccagccataaaaaatatgggaatatcaatc
cccatcgaccaatcgagtttcagtccgttatttttatccacACTGGCAGA
AAAAACCCTaccgggtctatgagaagggggtgtaatgaCAAATTCGATAA
GTTTTTAGatcaaacaaaattttatccggTTTGTAGTATTTTGtcacaaa
aattaaatgaatTCGGTAAGGGATTTAAAGTTCAATCAAAAATTGATAAT
TCACGATTCCATCTAACTCAAGTTTGAATATATCTTTTCAACACCAATTA
AATTATAAAGTAAAAGTAAGTTCATAACTAAAAAGAATTTCCAAAGATTA
CAAGGGCTTTTAATCTCAAAATAAACATTTGGATTCATAAAATAAATATA
ACATATAACCGCCTCCGTTAATCCTCCGGTGTGATCATCAAAACGAGACA
AATTTTGTGTAGAATACCTTCGTCCAATGTTTATTTTCTTGAGTAGGTAT
ATGCCACATTGCtatattttgattgaaaacttttaattttgtcGAGAGGG
CTTTAAAAATAAAGTAAGTAAGCACTtaaatagaaaaacaaaacaaagac
caATGAGTCGCCATAAACAATATTATTAGACGGTCATTCAGCTGTTTGTG
CAGCAATATCATTTGCTACTGTANCAATATTATTAGACGGTCATTCAGCT
ATTTGTGCAGCAATATCATTTGCTACTGTATTTATTGAATGAATTGAATT
AGTGCCAAGACTTTTAATAATGACAACCCCTCTGGGTGAATAATCTATCT
tgctttttatttgtttttgattttgatttgaacATTTGTTGGCTTTTTCT
ATCTCAGAGCGAATTATActgatttgataattttaatTAACGGTACTATA
CTTACAAATCCAGCCCAATTCCTCCAACCATAACATATTATAACATTTTG
CCACAAAATTCTATTTCCCCGACCTTACAGAACTTTTCCTTATATTGTAA
ACGTTTTCAGTGTAAGCAAACATTACTTACAAGGTCTTAAAAACTAAGTA
AAGGGAAATCCCCATTCCTGAGTAAAATTTCACAcactcctgtgtcacag
acccgctgggaccccagcccactggaaaatttggccaaaatttcgtcctt
AATACTGAAATTACCCcgaaatttcagccccattggATACATTAAATGAG
TTCATCCCCATTCAAATTTCATTgtgaaaaattgcactccaaaaccatcc
caacttgattttttataagcttggaacaatagaatctcTATCACCATTGA
GATAACCACGGAAAATGTtttaccggggctgtgagacagggatgttttCA
CATACATTTCAAAAATGCTTTGAAGGAGGATTTATGCTCCTTAAGGTTAT
TTGAGACAGGGGCATACACTAGTTCATACGCCGATTCGTCAATTAACACT
TTCTTTTCTTGTGTCTTATAATTTATAGATCCATCAGTGTGGAGCCATGG
TCAACCTCATTGAACGTTCCCTACcttaacaacaacaacaacaccacaaa
caacaacaataataattTACCCAACAACAATTATCTCATGTCTACTACAA
AAGACAATCTGAAAAATTCCAAAACGAATGTTGGTTATCCAGATACGGTT
TCTGTACATCCACACGATGCAGTCAAACAATCACCGTCATATTTCGCTGA
CATAAGTTGCTCGATGTAATTTGGTCGTTTGAACAACACTTCTCTGAAAT
ATACCAGAAATATGATTCATCCATTTTTATTGACTCGATAAATTTAAATG
TTGAATTAGACGAAAAAATTGTATTTGGCATAGCAATGGTTTTTTTGTCT
TATGATAAATTTCATGCTGGATACTTTTCTTGGTGATGTTCCTAACTGGA
ATAAACAATGTTGTTTCGATATAATGTGATGGGTGTTGTTCTGACCTTTT
CGTGACAGCTCAATGGACGTCACATTAGAGGTGCCCAGGGACAAGCATCG
TTTCTGAATTGTAAAGTTTCAGAAAAGGAGAACATTTATAACAGGTATCT
TGAGGTACCAAATGATTCCCAaagtaaaagaagaaattcaacaaattgaa
tttttaaatgtttGTGACGTAGGATTTTATTAAGTACTCAAAGAGTCTAA
ATAGCGGTTAATTAggatataaatatttttttcgtttAAATAAGATAATA
ATAATAGCAGATTGCTTTGTAAGTATCGCATAATTATATCATTAAGAATC
ATCGCagaattttatcatatttttagcattttaggGCTcacattgatttt
gatattatttttttgggtaAAATGTATTTTGTCTTGAAGAGACACTATAT
GGTAGTAAATATAGTTTTGGGGAATTTAAGTCTGTAAATATTTAATAGAT
ATTATATTAAGGAATAATACTTGTTTTAAATTGTAATTGGACAATCCACC
CTTATCTGACAACAAAACTTGTTGTGAGGTAAAACTTTTCCTCACAGCG Coding sequence (CDS) from alignment at scaffold_247:26943..32141+ >TCONS_00054936 ID=TCONS_00054936|Name=TCONS_00054936|organism=Clytia hemisphaerica|type=CDS|length=1704bp|location=Sequence derived from alignment at scaffold_247:26943..32141+ (Clytia hemisphaerica) ATGAGTACCACTACTTTCGATACTGCAGAAATTCAAAAACATGCTAATGT CGTTATGAACTATACTGCTGAGCAGATTGAATGTGTTTGTGACGCTCTTA TACAAAGCCAGAATTATGACACCTTGGCCAAATTGTTGTGGTCGTTGCCT AGGAACGAGATGAACCATAGCAGCGAGTGTATATTGAAGAGCCGAGCTTA CGTTGCTTTACACCAAGGACGATTCAGAGACTTGTATACACTCTTAGAAA GCCATGATTTCGATCCTGACTTGCACCCAGTAATGCAGCAAATGTGGCAT GATGCACATTACCTAGAAGCAGAGAAAATCCGTGGACGACCGTTAGGCGC TGTTGAGAAATATCGAATCAGGCGCAAATACCCATTACCTAGAACCATTT GGGACGGTGAAGAGACAGTTTACTGTTTCAAGGAAAAGTCAAGACAGGTG TTAAAAGACTGGTATGATAAGAATAAGTACCCTACACCACAGGATAAACG TATTTTAGCTAAACGTACAGAGCTGACTTTGGTCCAAGTTTCAAATTGGT TCAAGAACAGACGACAGCGTGATAAACCGAACGGCGAAGGAGAAGAAGAG AAGATTGGGAGATCCATCAGTGTGGAGCCATGGTCAACCTCATTGAACGT TCCCTACcttaacaacaacaacaacaccacaaacaacaacaataataatt TACCCAACAACAATTATCTCATGTCTACTACAAAAGACAATCTGAAAAAT TCCAAAACGAATGTTGGTTATCCAGATACGGTTTCTGTACATCCACACGA TGCAGTCAAACAATCACCGTCATATTTCGCTGACATAAGTTGCTCGATGT AAATGAGTACCACTACTTTCGATACTGCAGAAATTCAAAAACATGCTAAT GTCGTTATGAACTATACTGCTGAGCAGATTGAATGTGTTTGTGACGCTCT TATACAAAGCCAGAATTATGACACCTTGGCCAAATTGTTGTGGTCGTTGC CTAGGAACGAGATGAACCATAGCAGCGAGTGTATATTGAAGAGCCGAGCT TACGTTGCTTTACACCAAGGACGATTCAGAGACTTGTATACACTCTTAGA AAGCCATGATTTCGATCCTGACTTGCACCCAGTAATGCAGCAAATGTGGC ATGATGCACATTACCTAGAAGCAGAGAAAATCCGTGGACGACCGTTAGGC GCTGTTGAGAAATATCGAATCAGGCGCAAATACCCATTACCTAGAACCAT TTGGGACGGTGAAGAGACAGTTTACTGTTTCAAGGAAAAGTCAAGACAGG TGTTAAAAGACTGGTATGATAAGAATAAGTACCCTACACCACAGGATAAA CGTATTTTAGCTAAACGTACAGAGCTGACTTTGGTCCAAGTTTCAAATTG GTTCAAGAACAGACGACAGCGTGATAAACCGAACGGCGAAGGAGAAGAAG AGAAGATTGGGAGATCCATCAGTGTGGAGCCATGGTCAACCTCATTGAAC GTTCCCTACcttaacaacaacaacaacaccacaaacaacaacaataataa ttTACCCAACAACAATTATCTCATGTCTACTACAAAAGACAATCTGAAAA ATTCCAAAACGAATGTTGGTTATCCAGATACGGTTTCTGTACATCCACAC GATGCAGTCAAACAATCACCGTCATATTTCGCTGACATAAGTTGCTCGAT GTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00054936-exon-scaffold_247-1491911889:26943..28391 | TCONS_00054936-exon-scaffold_247-1491911889:26943..28391 | Clytia hemisphaerica | exon |
TCONS_00054936-exon-scaffold_247-1510915933:26943..28391 | TCONS_00054936-exon-scaffold_247-1510915933:26943..28391 | Clytia hemisphaerica | exon |
TCONS_00054936-exon-scaffold_247-1575043694:26943..28391 | TCONS_00054936-exon-scaffold_247-1575043694:26943..28391 | Clytia hemisphaerica | exon |
TCONS_00054936-exon-scaffold_247-1491911889:31121..32141 | TCONS_00054936-exon-scaffold_247-1491911889:31121..32141 | Clytia hemisphaerica | exon |
TCONS_00054936-exon-scaffold_247-1510915933:31121..32141 | TCONS_00054936-exon-scaffold_247-1510915933:31121..32141 | Clytia hemisphaerica | exon |
TCONS_00054936-exon-scaffold_247-1575043694:31121..32141 | TCONS_00054936-exon-scaffold_247-1575043694:31121..32141 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_247 | supercontig | scaffold_247:26943..32141 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
Term | Definition |
GO:0003677 | DNA binding |
GO:0043565 | sequence-specific DNA binding |
Vocabulary: Biological Process
Term | Definition |
GO:0006355 | regulation of transcription, DNA-templated |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0006355 |
regulation of transcription, DNA-templated |
molecular_function |
GO:0003677 |
DNA binding |
molecular_function |
GO:0043565 |
sequence-specific DNA binding |
Blast
BLAST of TCONS_00054936 vs. Swiss-Prot (Human)
Match: SIX1 (Homeobox protein SIX1 OS=Homo sapiens GN=SIX1 PE=1 SV=1) HSP 1 Score: 246.899 bits (629), Expect = 2.114e-74 Identity = 108/174 (62.07%), Postives = 134/174 (77.01%), Query Frame = 2
Query: 893 MNYTAEQIECVCDALIQSQNYDTLAKLLWSLPRNEMNHSSECILKSRAYVALHQGRFRDLYTLLESHDFDPDLHPVMQQMWHDAHYLEAEKIRGRPLGAVEKYRIRRKYPLPRTIWDGEETVYCFKEKSRQVLKDWYDKNKYPTPQDKRILAKRTELTLVQVSNWFKNRRQRDK 1414
+T EQ+ CVC+ L Q N + L + LWSLP + H +E +LK++A VA H+G FR+LY +LESH F P HP +QQ+W AHY+EAEK+RGRPLGAV KYR+RRK+PLPRTIWDGEET YCFKEKSR VL++WY N YP+P++KR LA+ T LT QVSNWFKNRRQRD+
Sbjct: 7 FGFTQEQVACVCEVLQQGGNLERLGRFLWSLPACDHLHKNESVLKAKAVVAFHRGNFRELYKILESHQFSPHNHPKLQQLWLKAHYVEAEKLRGRPLGAVGKYRVRRKFPLPRTIWDGEETSYCFKEKSRGVLREWYAHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDR 180
The following BLAST results are available for this feature:
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