|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054940 ID=TCONS_00054940|Name=TCONS_00054940|organism=Clytia hemisphaerica|type=transcript|length=2401bp
AGACTGTATCTTAGGTAAAACGTTGCGTAGttcaatgaattttgaattcc
GCAGATACTGGTTGGTCTATTTACAGACACGATAGAGGTCGGGGGTTGCT
ATAGATAAGACCTGGACCTGGCTTCATTCATTGGACTTTTAAGGACTAGA
ATTTTGAGGGAATATTGTATTGTTATAAGGGTCTTTGAGCAACCAAAAAG
AGCCTACTCAATAGGGAAAGGATTGTTATTAGCCGGAAGAAGAAAACATA
TGCCTCTACTTTCTATCCAAAATTTTGTGCTTTAGTTTTCAATCTTGTTT
TCTAGTGAATAAATTTCAGCTTATAGTTTTATAAATCTTGATAACTCATA
AGGCTTCTTTGGCGAAAACTACAAACCGAAAGTAAAAAGTCTACATTTTT
AAATCACGAGTTAAATTCAACATTTTACCTACAGTACAGatttaacaaaa
tttgaaacatattatttcaaatttgaagtAAAACAATCAAGAAATAACAA
CAATGGGTGTGCGCGAATTTTCAATCATGTTGGATTCGAACCGTCAAGTG
TTCTATCCTGGTGAAACAGTAACAGGAAATGTCATTTTAGATTTACAAGG
ACAAATGTCTATGAAGGGAATCACCATTGAATTTGAAGGAAAGTCATTTT
GCCATTGGACTGAACAAACTTGGGAAGGGACTGGTGAAGACAGGCGTCAA
GTTACCAAACACATCGaagggaaagaaaaatatttcgaaaacaaaacgTG
TTTATTTGGTGCCATTTCTGGAGGACACACAAGGATCCATCCACACGGTC
ACTTCAAATATCCATTTGTCTTTAACATTCCACAGAGTGTACCAAGCTCC
TTTGAAGGAAGTCATGGAAGAATCAGATTCGAATTGAAAGCCGAGATCGA
TATTCCAGGAAAACGAGACATCAAAACAAGACGACCGATTACAATCAACG
AAATTGTCGACACAAATAACCCAAATTATGGGCAATCTCCAAATGGCCGT
TTAACAAAAGAAGTTGGCTGCCTCTGTTGGAAGGCTGGAAATCTAGATGT
CGAAGGACATATTGATCGAAAGTGCTATTGTCCAGGTGAATTAATTTTGG
TCAATTCACAAGTGCAAAACCAAACCACAAAGGATATGAAGGCATTAAAA
GCGAAATTGTATCAAGATATTCTGTACATTGCTGAAGGCCACAAACAGAA
ACGAGAAAACAAAGTAATTGTCAGAATTGACGGACCACAAATACCTCAAG
GCAAGAATGAAACATGGAGTAACAGACCTTTGGCTATTCCAGCCTGTCCC
CCATCTATTAGCAAATCATCGATAATCAAAGTCTCTTACATGGTTCGTGT
GGAGGTTGATGTCCCATGGGGAATCGATCCCAAGATTGAAATGCCCATTA
TTTTGGGTACTGTACCATACAGAGGAACATATGGACAACCACAACAATAT
GGGTTACCACAAGAACAAATGCCTGTGCCAGAAAATAaCTTTTCAAACAC
ACCTCAAATGCCACCAGCACCATCAAATATGCTTGGTTACCCAGACATGG
CTCCCCCTGCTTATGCAGCAGCTGTTGGGAGTAGTCGAGTCAATGTTCAT
CAAGATGACAACAGTGAATTAATGGGAAACTCTATGTACATCCCTGCTTA
CACATTTGCTGCACCTTACAAGGGCTCTATGAAGATTGAACAGGGTAGCA
TGAACCCACAACAGCCAACAGCACCACCTGCAGGGTATCCCCCTCAACAG
CCAGGTTACCCACCTGTCCAACCTGGCTACCCACCCACACAACCAGGCTA
CCCCCCACAACAACCTAATAACCTGATTGGTTTCGATGGCTCTGCTTATC
CAGCTGCGCACCCTGGCTATCAACCACAACCTGGAATGGCTGCTGGACCA
TACTGAACCAATAGAAAATGAACAATATAATTGAGGTTACTTCTTAAGAC
CTTTACCTTTTAAAGGCAGTGATATGAGTTAATTTAACTTCAAAGTTGCT
ATTCGACTTGAATATGTAGTACGTGCTTAAAGTTaccaatcaaagatttt
gaggGGCAAAAAACAAcgtgtttttgaagaaatttcttttttcgttttAC
TTTTGTAACCTGAAGCTGGACCATAATTAAAGTATGACAGCTTACAATTT
ACGTTTAGCTTTCGTCGAAACGTTTGTAGATTTATAACGACAATGTCTTG
TTTTCTCTGAATCTTATTTTAAActtatacactttttttacaCACTTTAA
CTCTCTATACTAGcttttactttcattttgaaTTCTTCTTGTATATAGTT
TTTCTTTGCAGGGTTGAGATAAATATTTCCCTGTATATAATCAGATAATT
CATCAAAATACTACCAACATTGATTTTGCAAATAAATAGGAACAAATAAT
T Run BLAST on NCBI protein sequence of TCONS_00054940-protein >TCONS_00054940-protein ID=TCONS_00054940-protein|Name=TCONS_00054940-protein|organism=Clytia hemisphaerica|type=polypeptide|length=467bp
MGVREFSIMLDSNRQVFYPGETVTGNVILDLQGQMSMKGITIEFEGKSFC
HWTEQTWEGTGEDRRQVTKHIEGKEKYFENKTCLFGAISGGHTRIHPHGH
FKYPFVFNIPQSVPSSFEGSHGRIRFELKAEIDIPGKRDIKTRRPITINE
IVDTNNPNYGQSPNGRLTKEVGCLCWKAGNLDVEGHIDRKCYCPGELILV
NSQVQNQTTKDMKALKAKLYQDILYIAEGHKQKRENKVIVRIDGPQIPQG
KNETWSNRPLAIPACPPSISKSSIIKVSYMVRVEVDVPWGIDPKIEMPII
LGTVPYRGTYGQPQQYGLPQEQMPVPENNFSNTPQMPPAPSNMLGYPDMA
PPAYAAAVGSSRVNVHQDDNSELMGNSMYIPAYTFAAPYKGSMKIEQGSM
NPQQPTAPPAGYPPQQPGYPPVQPGYPPTQPGYPPQQPNNLIGFDGSAYP
AAHPGYQPQPGMAAGPY Run BLAST on NCBI transcript from alignment at scaffold_247:73959..79643+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054940 ID=TCONS_00054940|Name=TCONS_00054940|organism=Clytia hemisphaerica|type=transcript|length=5685bp|location=Sequence derived from alignment at scaffold_247:73959..79643+ (Clytia hemisphaerica)
AGACTGTATCTTAGGTAAAACGTTGCGTAGttcaatgaattttgaattcc
GCAGATACTGGTTGGTCTATTTACAGACACGATAGAGGTCGGGGGTTGCT
ATAGATAAGACCTGGACCTGGCTTCATTCATTGGACTTTTAAGGACTAGA
ATTTTGAGGGAATATTGTATTGTTATAAGGGTCTTTGAGCAACCAAAAAG
AGCCTACTCAATAGGGAAAGGATTGTTATTAGCCGGAAGAAGAAAACATA
TGCCTCTACTTTCTATCCAAAATTTTGTGCTTTAGTTTTCAATCTTGTTT
TCTAGTGAATAAATTTCAGCTTATAGTTTTATAAATCTTGATAACTCATA
AGGCTTCTTTGGCGAAAACTACAAACCGAAAGTAAAAAGTCTACATTTTT
AAATCACGAGTTAAATTCAACATTTTACCTACAGTACAGatttaacaaaa
tttgaaacatattatttcaaatttgaagtAAAACAATCAAGAAATAACAA
CAATGGGTGTGCGCGAATTTTCAATCATGTTGGATTCGAACCGTCAAGTG
TTCTATCCTGGTGAAACAGTAACAGGAAATGTCATTTTAGATTTACAAGG
ACAAATGTCTATGAAGGGAATCACCATTGAATTTGAAGGTATGTTAACTC
AACTTTTTATCCGATGTTTTGGTATAAGAATATTCCGATGCACTAAATGG
AATTAATTATTAGCACAGTTCTCTACAGATTTCGCTTGTCATCCCTATAA
TATTGAAATCTCTTAGCAATCTCCCCTGCGTCTCTTAAATCCACAATGTT
TTGAACTTAAGGTTCGCAAAGGTGACTCAAAACTCAGAAATTAGAATTGT
GAAACAGACTTTATATGCATACCATTTTTTGTGGTCAAAAAATAAAGTGC
TTTCTCGAGTGTATTTTAGCCTAttctagacgtcacccgcgttttttcta
cgcgattaacgtctattccactatgcgacttttttgaatgtttgaagCCC
AGGTTTTTgggtagcctatactagacgtcacccgcaagatgaaaaatccc
ggtttttagtgaggtgctcgctaggtTTTCGGGCTGCAaacattttttga
cgtcacttttaacttgtGAATCCCTAGACGATCCTAttgtctacacaaga
tcactaaaaaagggaatagtttaggagaggcgtgataaattcgggtggag
taagcagtggcggagatgtttacagtgttccaaaactctagcgccacttt
tttcccgtaaaccgccctgacgcccgaattttttcccgcgtttaactgac
ctttaaacggacgatagcatcgtctagtgaATCCCTTGCAGTATAAAaga
atcgaatttgcgtcaaagcacttgaaaggtttcgtttttcagaaaatcgt
caaagtggaactcactaagaaacgagatgaaaaatcccagtTTTTGGTGA
GTTGCTCACTAATGCATTCTAGGCTTTAATTGAATTTAACATATTTGCAC
ACGGtccttttgaaaatgtttaggGTCAGAAACCTAGACTGAAATTTGAC
GCTTTTTTCGTGTCTTTGTGACTAAACCCTTTTTAGTTACAATCTCGACT
TGACCAAGATAAGCAGACTAAACAAACAAATCGttaataaaatctaaatt
tacATTTATAGTGGAGGAATGGCAGATTCTTCTGTCCCTTATTTctttaa
gtattcaaaatattttaccaaTACCACTAGACAACCCTCCGATTCCCGAT
ACTGCCCTCTAGCCCTCTTTCCTCGAAAATAATGTAGGGATTCATTTTTC
AAGTTATGGAACAATCTGTAAATTTCATCAACCTCTAAAGGTATCATTTC
CACATAATGTAGAATTAAGGCTTCCAACTTGAATACTGAGGGCTAATGTC
TGTATGCTTCGTGTTTTATTATCAGGAAAGTCATTTTGCCATTGGACTGA
ACAAACTTGGGAAGGGACTGGTGAAGACAGGCGTCAAGTTACCAAACACA
TCGaagggaaagaaaaatatttcgaaaacaaaacgTGTTTATTTGGTGCC
ATTTCTGGAGGACACACAAGGATCCATCCACACGGTCACTTCAAATATCC
ATTTGTCTTTAACATTCCACAGAGTGTACCAAGCTCCTTTGAAGGAAGTC
ATGGAAGAATCAGATTCGAATTGAAAGGTAGTTATTCCTGAACGTTAAAA
TGACGTCTATCTTACATCCATAACGGGTATATAACGCTAGATgaaaatga
acgttgaaacatgaaagctgaaaattttttctttcggCCTCAAATTGAAT
TGCAGATGCCACCGAACAATTAACTAGCTTGattaaattttaaagaaata
aattgTCCATGTTTTTCCCGTTAAACTACTATTTTAAATTTCCATACTTC
CATATTCCATATTTCCTCAAATTATTtaaatttagattttcaacaGGCTC
CTTAAATAAACTGATAATGCCTGATGGTTTCGTCTATAGTCACTCGTCTT
GACCAAAATAGCAACAGACCTGTTCCATcttatctaaaatatttttgaat
ctaTTTCTAGCCGAGATCGATATTCCAGGAAAACGAGACATCAAAACAAG
ACGACCGATTACAATCAACGAAATTGTCGACACAAATAACCCAAATTATG
GGCAATCTCCAAATGGCCGTTTAACAAAAGAAGTTGGCTGCCTCTGTTGG
AAGGCTGGAAATCTAGATGTCGAAGGTTGGtataaaaaaattcagatttA
AGATATCACGTCAAAAATCTTATGTCAGAAAACTTGAATAAACTTCCCTC
TAAAGAATAATGCCATAACTACCAATGAACTGGTTTTAAGGAACAATGAA
TGAAGTTATGAAGCCCCCTATGTACAATGTAGCCCCATCCCTATTCCTAT
TTTCCTAGCCCCACTTTAAAGATCAATAGCTGGCAAAAGTTAGCAAAGTT
CTTCAATACCattaatgttttcttttaaGGACATATTGATCGAAAGTGCT
ATTGTCCAGGTGAATTAATTTTGGTCAATTCACAAGTGCAAAACCAAACC
ACAAAGGATATGAAGGCATTAAAAGCGAAATTGTATCAAGATATTCTGTA
CATTGCTGAAGGCCACAAACAGAAACGAGAAAACAAAGTAATTGTCAGAA
TTGACGGTAAGTTGAAAACATTAgaaacaaactttaaaaatcTTATCAGG
GTCTTTTTGATATCTGACAATTTGCTTTCGAACTGCAAAGTAGATCTTTC
CCAAATCTCTGTTCGAAGTATGACGGAAAATGTACCattaaaaatttgaa
gataAGACCAAATTATCCAACcaaatgaaaaacaaacaatatgTCATTGT
ACAAATTCTTTCCACACCAAATtcatcttttcgaccgtagtcgcgcggac
AGGCACGTGCTATTTGATTACTAAATTACCCCCTGAACTTTATCCAGTCC
TTTTTACACCTTTCTCTTTCGTATTCATGTGGGAAAataaatagacgata
tcgcgtttagataaatgcaatgcattctggtttctcggggaccctcaagg
gaattataatctattccagatcattatataattgacattataattccttt
gagagtccccgagaaaccagaatgcattgcatttatctaaacgcgatatc
gtctattgatacaagtttagggtggtaaacaGAAAagtgcccgcgcggca
attggcggctacggtcaaaaaggtgcaTTGTGGGTAATGACGGTATTGTA
AAGGAAATCCGTTAAAAACACTATATCATTTACAAACTTTAGGACCACAA
ATACCTCAAGGCAAGAATGAAACATGGAGTAACAGACCTTTGGCTATTCC
AGCCTGTCCCCCATCTATTAGCAAATCATCGATAATCAAAGTCTCTTACA
TGGTTCGTGTGGAGGTTGATGTCCCATGGGGAATCGATCCCAAGATTGAA
ATGCCCATTATTTTGGGTACTGTACCATACAGAGGAACATATGGACAACC
ACAACAATATGGGTTACCACAAGAACAAATGCCTGTGCCAGAAAATAGTA
AGCATATTTGACATTTTAACTCGAACCCAACCCCTTTATAGCTAACTTTA
TTATGATTCACAAAAAGTAGCACGTAGCTCTGGCAACGAGATTGATATTT
TCATTGCCTCAAACACTAAGTAGGTAAGTCAAAACATGGAACTACAGAAA
TATTCTGTCAAGCAATATATTTGCGGGTGCAAGCAAAATATTGGTGAGTT
ACAACGATAGAGCACTCAAAATACATATTGAAAAATCGTCCTCGATACAC
CATCAAAGCACAAAGCCAAAGGAGACTGGCTTACATTTTACCACAAAAGA
ATGAAGTCATTGATGTTTCTTAAGacattttgacgtcaatcgtaCTTGAT
AAACAGCCTCCTCAAAGTCTCTAAAGTTATGATTAAACTGGGGTAATAAT
AAtgttcattttattttctctttagaCTTTTCAAACACACCTCAAATGCC
ACCAGCACCATCAAATATGCTTGGTTACCCAGACATGGCTCCCCCTGCTT
ATGCAGCAGCTGTTGGGAGTAGTCGAGTCAATGTTCATCAAGATGACAAC
AGTGAATTAATGGGAAACTCTATGTACATCCCTGCTTACACATTTGCTGC
ACCTTACAAGGTAAGTATTCTTTCCACTGGATAAAAGACCAAAAAAACTT
GCCTATTGGAATAATTACTTTCAGAGATCTTATCACCATTtcggaaaaaa
actttcagactCTCGATGACTGATTTAGATTTATCATGCAAACAACGAAT
CGCTTAATATTCTAGCAGCCATAAAGTTGTATGCTTTACTTTATTCCCTA
TACTGTCCATTGATGTAAGTTTCTCTGAACGAAGTGAGACAGGGATATTT
GATAAGACGCAATTTTAAAAGCCGAAATCACGAGACTAACTATTTATTTA
CTTTAGGGCTCTATGAAGATTGAACAGGGTAGCATGAACCCACAACAGCC
AACAGCACCACCTGCAGGGTATCCCCCTCAACAGCCAGGTTACCCACCTG
TCCAACCTGGCTACCCACCCACACAACCAGGCTACCCCCCACAACAACCT
AATAACCTGATTGGTTTCGATGGCTCTGCTTATCCAGCTGCGCACCCTGG
CTATCAACCACAACCTGGAATGGCTGCTGGACCATACTGAACCAATAGAA
AATGAACAATATAATTGAGGTTACTTCTTAAGACCTTTACCTTTTAAAGG
CAGTGATATGAGTTAATTTAACTTCAAAGTTGCTATTCGACTTGAATATG
TAGTACGTGCTTAAAGTTaccaatcaaagattttgaggGGCAAAAAACAA
cgtgtttttgaagaaatttcttttttcgttttACTTTTGTAACCTGAAGC
TGGACCATAATTAAAGTATGACAGCTTACAATTTACGTTTAGCTTTCGTC
GAAACGTTTGTAGATTTATAACGACAATGTCTTGTTTTCTCTGAATCTTA
TTTTAAActtatacactttttttacaCACTTTAACTCTCTATACTAGctt
ttactttcattttgaaTTCTTCTTGTATATAGTTTTTCTTTGCAGGGTTG
AGATAAATATTTCCCTGTATATAATCAGATAATTCATCAAAATACTACCA
ACATTGATTTTGCAAATAAATAGGAACAAATAATT Coding sequence (CDS) from alignment at scaffold_247:73959..79643+ >TCONS_00054940 ID=TCONS_00054940|Name=TCONS_00054940|organism=Clytia hemisphaerica|type=CDS|length=9828bp|location=Sequence derived from alignment at scaffold_247:73959..79643+ (Clytia hemisphaerica)
ATGGGTGTGCGCGAATTTTCAATCATGTTGGATTCGAACCGTCAAGTGTT
CTATCCTGGTGAAACAGTAACAGGAAATGTCATTTTAGATTTACAAGGAC
AAATGTCTATGAAGGGAATCACCATTGAATTTGAAGGAAAGTCATTTTGC
CATTGGACTGAACAAACTTGGGAAGGGACTGGTGAAGACAGGCGTCAAGT
TACCAAACACATCGaagggaaagaaaaatatttcgaaaacaaaacgTGTT
TATTTGGTGCCATTTCTGGAGGACACACAAGGATCCATCCACACGGTCAC
TTCAAATATCCATTTGTCTTTAACATTCCACAGAGTGTACCAAGCTCCTT
TGAAGGAAGTCATGGAAGAATCAGATTCGAATTGAAAGCCGAGATCGATA
TTCCAGGAAAACGAGACATCAAAACAAGACGACCGATTACAATCAACGAA
ATTGTCGACACAAATAACCCAAATTATGGGCAATCTCCAAATGGCCGTTT
AACAAAAGAAGTTGGCTGCCTCTGTTGGAAGGCTGGAAATCTAGATGTCG
AAGGACATATTGATCGAAAGTGCTATTGTCCAGGTGAATTAATTTTGGTC
AATTCACAAGTGCAAAACCAAACCACAAAGGATATGAAGGCATTAAAAGC
GAAATTGTATCAAGATATTCTGTACATTGCTGAAGGCCACAAACAGAAAC
GAGAAAACAAAGTAATTGTCAGAATTGACGGACCACAAATACCTCAAGGC
AAGAATGAAACATGGAGTAACAGACCTTTGGCTATTCCAGCCTGTCCCCC
ATCTATTAGCAAATCATCGATAATCAAAGTCTCTTACATGGTTCGTGTGG
AGGTTGATGTCCCATGGGGAATCGATCCCAAGATTGAAATGCCCATTATT
TTGGGTACTGTACCATACAGAGGAACATATGGACAACCACAACAATATGG
GTTACCACAAGAACAAATGCCTGTGCCAGAAAATAaCTTTTCAAACACAC
CTCAAATGCCACCAGCACCATCAAATATGCTTGGTTACCCAGACATGGCT
CCCCCTGCTTATGCAGCAGCTGTTGGGAGTAGTCGAGTCAATGTTCATCA
AGATGACAACAGTGAATTAATGGGAAACTCTATGTACATCCCTGCTTACA
CATTTGCTGCACCTTACAAGGGCTCTATGAAGATTGAACAGGGTAGCATG
AACCCACAACAGCCAACAGCACCACCTGCAGGGTATCCCCCTCAACAGCC
AGGTTACCCACCTGTCCAACCTGGCTACCCACCCACACAACCAGGCTACC
CCCCACAACAACCTAATAACCTGATTGGTTTCGATGGCTCTGCTTATCCA
GCTGCGCACCCTGGCTATCAACCACAACCTGGAATGGCTGCTGGACCATA
CTGAATGGGTGTGCGCGAATTTTCAATCATGTTGGATTCGAACCGTCAAG
TGTTCTATCCTGGTGAAACAGTAACAGGAAATGTCATTTTAGATTTACAA
GGACAAATGTCTATGAAGGGAATCACCATTGAATTTGAAGGAAAGTCATT
TTGCCATTGGACTGAACAAACTTGGGAAGGGACTGGTGAAGACAGGCGTC
AAGTTACCAAACACATCGaagggaaagaaaaatatttcgaaaacaaaacg
TGTTTATTTGGTGCCATTTCTGGAGGACACACAAGGATCCATCCACACGG
TCACTTCAAATATCCATTTGTCTTTAACATTCCACAGAGTGTACCAAGCT
CCTTTGAAGGAAGTCATGGAAGAATCAGATTCGAATTGAAAGCCGAGATC
GATATTCCAGGAAAACGAGACATCAAAACAAGACGACCGATTACAATCAA
CGAAATTGTCGACACAAATAACCCAAATTATGGGCAATCTCCAAATGGCC
GTTTAACAAAAGAAGTTGGCTGCCTCTGTTGGAAGGCTGGAAATCTAGAT
GTCGAAGGACATATTGATCGAAAGTGCTATTGTCCAGGTGAATTAATTTT
GGTCAATTCACAAGTGCAAAACCAAACCACAAAGGATATGAAGGCATTAA
AAGCGAAATTGTATCAAGATATTCTGTACATTGCTGAAGGCCACAAACAG
AAACGAGAAAACAAAGTAATTGTCAGAATTGACGGACCACAAATACCTCA
AGGCAAGAATGAAACATGGAGTAACAGACCTTTGGCTATTCCAGCCTGTC
CCCCATCTATTAGCAAATCATCGATAATCAAAGTCTCTTACATGGTTCGT
GTGGAGGTTGATGTCCCATGGGGAATCGATCCCAAGATTGAAATGCCCAT
TATTTTGGGTACTGTACCATACAGAGGAACATATGGACAACCACAACAAT
ATGGGTTACCACAAGAACAAATGCCTGTGCCAGAAAATAaCTTTTCAAAC
ACACCTCAAATGCCACCAGCACCATCAAATATGCTTGGTTACCCAGACAT
GGCTCCCCCTGCTTATGCAGCAGCTGTTGGGAGTAGTCGAGTCAATGTTC
ATCAAGATGACAACAGTGAATTAATGGGAAACTCTATGTACATCCCTGCT
TACACATTTGCTGCACCTTACAAGGGCTCTATGAAGATTGAACAGGGTAG
CATGAACCCACAACAGCCAACAGCACCACCTGCAGGGTATCCCCCTCAAC
AGCCAGGTTACCCACCTGTCCAACCTGGCTACCCACCCACACAACCAGGC
TACCCCCCACAACAACCTAATAACCTGATTGGTTTCGATGGCTCTGCTTA
TCCAGCTGCGCACCCTGGCTATCAACCACAACCTGGAATGGCTGCTGGAC
CATACTGAATGGGTGTGCGCGAATTTTCAATCATGTTGGATTCGAACCGT
CAAGTGTTCTATCCTGGTGAAACAGTAACAGGAAATGTCATTTTAGATTT
ACAAGGACAAATGTCTATGAAGGGAATCACCATTGAATTTGAAGGAAAGT
CATTTTGCCATTGGACTGAACAAACTTGGGAAGGGACTGGTGAAGACAGG
CGTCAAGTTACCAAACACATCGaagggaaagaaaaatatttcgaaaacaa
aacgTGTTTATTTGGTGCCATTTCTGGAGGACACACAAGGATCCATCCAC
ACGGTCACTTCAAATATCCATTTGTCTTTAACATTCCACAGAGTGTACCA
AGCTCCTTTGAAGGAAGTCATGGAAGAATCAGATTCGAATTGAAAGCCGA
GATCGATATTCCAGGAAAACGAGACATCAAAACAAGACGACCGATTACAA
TCAACGAAATTGTCGACACAAATAACCCAAATTATGGGCAATCTCCAAAT
GGCCGTTTAACAAAAGAAGTTGGCTGCCTCTGTTGGAAGGCTGGAAATCT
AGATGTCGAAGGACATATTGATCGAAAGTGCTATTGTCCAGGTGAATTAA
TTTTGGTCAATTCACAAGTGCAAAACCAAACCACAAAGGATATGAAGGCA
TTAAAAGCGAAATTGTATCAAGATATTCTGTACATTGCTGAAGGCCACAA
ACAGAAACGAGAAAACAAAGTAATTGTCAGAATTGACGGACCACAAATAC
CTCAAGGCAAGAATGAAACATGGAGTAACAGACCTTTGGCTATTCCAGCC
TGTCCCCCATCTATTAGCAAATCATCGATAATCAAAGTCTCTTACATGGT
TCGTGTGGAGGTTGATGTCCCATGGGGAATCGATCCCAAGATTGAAATGC
CCATTATTTTGGGTACTGTACCATACAGAGGAACATATGGACAACCACAA
CAATATGGGTTACCACAAGAACAAATGCCTGTGCCAGAAAATAaCTTTTC
AAACACACCTCAAATGCCACCAGCACCATCAAATATGCTTGGTTACCCAG
ACATGGCTCCCCCTGCTTATGCAGCAGCTGTTGGGAGTAGTCGAGTCAAT
GTTCATCAAGATGACAACAGTGAATTAATGGGAAACTCTATGTACATCCC
TGCTTACACATTTGCTGCACCTTACAAGGGCTCTATGAAGATTGAACAGG
GTAGCATGAACCCACAACAGCCAACAGCACCACCTGCAGGGTATCCCCCT
CAACAGCCAGGTTACCCACCTGTCCAACCTGGCTACCCACCCACACAACC
AGGCTACCCCCCACAACAACCTAATAACCTGATTGGTTTCGATGGCTCTG
CTTATCCAGCTGCGCACCCTGGCTATCAACCACAACCTGGAATGGCTGCT
GGACCATACTGAATGGGTGTGCGCGAATTTTCAATCATGTTGGATTCGAA
CCGTCAAGTGTTCTATCCTGGTGAAACAGTAACAGGAAATGTCATTTTAG
ATTTACAAGGACAAATGTCTATGAAGGGAATCACCATTGAATTTGAAGGA
AAGTCATTTTGCCATTGGACTGAACAAACTTGGGAAGGGACTGGTGAAGA
CAGGCGTCAAGTTACCAAACACATCGaagggaaagaaaaatatttcgaaa
acaaaacgTGTTTATTTGGTGCCATTTCTGGAGGACACACAAGGATCCAT
CCACACGGTCACTTCAAATATCCATTTGTCTTTAACATTCCACAGAGTGT
ACCAAGCTCCTTTGAAGGAAGTCATGGAAGAATCAGATTCGAATTGAAAG
CCGAGATCGATATTCCAGGAAAACGAGACATCAAAACAAGACGACCGATT
ACAATCAACGAAATTGTCGACACAAATAACCCAAATTATGGGCAATCTCC
AAATGGCCGTTTAACAAAAGAAGTTGGCTGCCTCTGTTGGAAGGCTGGAA
ATCTAGATGTCGAAGGACATATTGATCGAAAGTGCTATTGTCCAGGTGAA
TTAATTTTGGTCAATTCACAAGTGCAAAACCAAACCACAAAGGATATGAA
GGCATTAAAAGCGAAATTGTATCAAGATATTCTGTACATTGCTGAAGGCC
ACAAACAGAAACGAGAAAACAAAGTAATTGTCAGAATTGACGGACCACAA
ATACCTCAAGGCAAGAATGAAACATGGAGTAACAGACCTTTGGCTATTCC
AGCCTGTCCCCCATCTATTAGCAAATCATCGATAATCAAAGTCTCTTACA
TGGTTCGTGTGGAGGTTGATGTCCCATGGGGAATCGATCCCAAGATTGAA
ATGCCCATTATTTTGGGTACTGTACCATACAGAGGAACATATGGACAACC
ACAACAATATGGGTTACCACAAGAACAAATGCCTGTGCCAGAAAATAaCT
TTTCAAACACACCTCAAATGCCACCAGCACCATCAAATATGCTTGGTTAC
CCAGACATGGCTCCCCCTGCTTATGCAGCAGCTGTTGGGAGTAGTCGAGT
CAATGTTCATCAAGATGACAACAGTGAATTAATGGGAAACTCTATGTACA
TCCCTGCTTACACATTTGCTGCACCTTACAAGGGCTCTATGAAGATTGAA
CAGGGTAGCATGAACCCACAACAGCCAACAGCACCACCTGCAGGGTATCC
CCCTCAACAGCCAGGTTACCCACCTGTCCAACCTGGCTACCCACCCACAC
AACCAGGCTACCCCCCACAACAACCTAATAACCTGATTGGTTTCGATGGC
TCTGCTTATCCAGCTGCGCACCCTGGCTATCAACCACAACCTGGAATGGC
TGCTGGACCATACTGAATGGGTGTGCGCGAATTTTCAATCATGTTGGATT
CGAACCGTCAAGTGTTCTATCCTGGTGAAACAGTAACAGGAAATGTCATT
TTAGATTTACAAGGACAAATGTCTATGAAGGGAATCACCATTGAATTTGA
AGGAAAGTCATTTTGCCATTGGACTGAACAAACTTGGGAAGGGACTGGTG
AAGACAGGCGTCAAGTTACCAAACACATCGaagggaaagaaaaatatttc
gaaaacaaaacgTGTTTATTTGGTGCCATTTCTGGAGGACACACAAGGAT
CCATCCACACGGTCACTTCAAATATCCATTTGTCTTTAACATTCCACAGA
GTGTACCAAGCTCCTTTGAAGGAAGTCATGGAAGAATCAGATTCGAATTG
AAAGCCGAGATCGATATTCCAGGAAAACGAGACATCAAAACAAGACGACC
GATTACAATCAACGAAATTGTCGACACAAATAACCCAAATTATGGGCAAT
CTCCAAATGGCCGTTTAACAAAAGAAGTTGGCTGCCTCTGTTGGAAGGCT
GGAAATCTAGATGTCGAAGGACATATTGATCGAAAGTGCTATTGTCCAGG
TGAATTAATTTTGGTCAATTCACAAGTGCAAAACCAAACCACAAAGGATA
TGAAGGCATTAAAAGCGAAATTGTATCAAGATATTCTGTACATTGCTGAA
GGCCACAAACAGAAACGAGAAAACAAAGTAATTGTCAGAATTGACGGACC
ACAAATACCTCAAGGCAAGAATGAAACATGGAGTAACAGACCTTTGGCTA
TTCCAGCCTGTCCCCCATCTATTAGCAAATCATCGATAATCAAAGTCTCT
TACATGGTTCGTGTGGAGGTTGATGTCCCATGGGGAATCGATCCCAAGAT
TGAAATGCCCATTATTTTGGGTACTGTACCATACAGAGGAACATATGGAC
AACCACAACAATATGGGTTACCACAAGAACAAATGCCTGTGCCAGAAAAT
AaCTTTTCAAACACACCTCAAATGCCACCAGCACCATCAAATATGCTTGG
TTACCCAGACATGGCTCCCCCTGCTTATGCAGCAGCTGTTGGGAGTAGTC
GAGTCAATGTTCATCAAGATGACAACAGTGAATTAATGGGAAACTCTATG
TACATCCCTGCTTACACATTTGCTGCACCTTACAAGGGCTCTATGAAGAT
TGAACAGGGTAGCATGAACCCACAACAGCCAACAGCACCACCTGCAGGGT
ATCCCCCTCAACAGCCAGGTTACCCACCTGTCCAACCTGGCTACCCACCC
ACACAACCAGGCTACCCCCCACAACAACCTAATAACCTGATTGGTTTCGA
TGGCTCTGCTTATCCAGCTGCGCACCCTGGCTATCAACCACAACCTGGAA
TGGCTGCTGGACCATACTGAATGGGTGTGCGCGAATTTTCAATCATGTTG
GATTCGAACCGTCAAGTGTTCTATCCTGGTGAAACAGTAACAGGAAATGT
CATTTTAGATTTACAAGGACAAATGTCTATGAAGGGAATCACCATTGAAT
TTGAAGGAAAGTCATTTTGCCATTGGACTGAACAAACTTGGGAAGGGACT
GGTGAAGACAGGCGTCAAGTTACCAAACACATCGaagggaaagaaaaata
tttcgaaaacaaaacgTGTTTATTTGGTGCCATTTCTGGAGGACACACAA
GGATCCATCCACACGGTCACTTCAAATATCCATTTGTCTTTAACATTCCA
CAGAGTGTACCAAGCTCCTTTGAAGGAAGTCATGGAAGAATCAGATTCGA
ATTGAAAGCCGAGATCGATATTCCAGGAAAACGAGACATCAAAACAAGAC
GACCGATTACAATCAACGAAATTGTCGACACAAATAACCCAAATTATGGG
CAATCTCCAAATGGCCGTTTAACAAAAGAAGTTGGCTGCCTCTGTTGGAA
GGCTGGAAATCTAGATGTCGAAGGACATATTGATCGAAAGTGCTATTGTC
CAGGTGAATTAATTTTGGTCAATTCACAAGTGCAAAACCAAACCACAAAG
GATATGAAGGCATTAAAAGCGAAATTGTATCAAGATATTCTGTACATTGC
TGAAGGCCACAAACAGAAACGAGAAAACAAAGTAATTGTCAGAATTGACG
GACCACAAATACCTCAAGGCAAGAATGAAACATGGAGTAACAGACCTTTG
GCTATTCCAGCCTGTCCCCCATCTATTAGCAAATCATCGATAATCAAAGT
CTCTTACATGGTTCGTGTGGAGGTTGATGTCCCATGGGGAATCGATCCCA
AGATTGAAATGCCCATTATTTTGGGTACTGTACCATACAGAGGAACATAT
GGACAACCACAACAATATGGGTTACCACAAGAACAAATGCCTGTGCCAGA
AAATAaCTTTTCAAACACACCTCAAATGCCACCAGCACCATCAAATATGC
TTGGTTACCCAGACATGGCTCCCCCTGCTTATGCAGCAGCTGTTGGGAGT
AGTCGAGTCAATGTTCATCAAGATGACAACAGTGAATTAATGGGAAACTC
TATGTACATCCCTGCTTACACATTTGCTGCACCTTACAAGGGCTCTATGA
AGATTGAACAGGGTAGCATGAACCCACAACAGCCAACAGCACCACCTGCA
GGGTATCCCCCTCAACAGCCAGGTTACCCACCTGTCCAACCTGGCTACCC
ACCCACACAACCAGGCTACCCCCCACAACAACCTAATAACCTGATTGGTT
TCGATGGCTCTGCTTATCCAGCTGCGCACCCTGGCTATCAACCACAACCT
GGAATGGCTGCTGGACCATACTGAATGGGTGTGCGCGAATTTTCAATCAT
GTTGGATTCGAACCGTCAAGTGTTCTATCCTGGTGAAACAGTAACAGGAA
ATGTCATTTTAGATTTACAAGGACAAATGTCTATGAAGGGAATCACCATT
GAATTTGAAGGAAAGTCATTTTGCCATTGGACTGAACAAACTTGGGAAGG
GACTGGTGAAGACAGGCGTCAAGTTACCAAACACATCGaagggaaagaaa
aatatttcgaaaacaaaacgTGTTTATTTGGTGCCATTTCTGGAGGACAC
ACAAGGATCCATCCACACGGTCACTTCAAATATCCATTTGTCTTTAACAT
TCCACAGAGTGTACCAAGCTCCTTTGAAGGAAGTCATGGAAGAATCAGAT
TCGAATTGAAAGCCGAGATCGATATTCCAGGAAAACGAGACATCAAAACA
AGACGACCGATTACAATCAACGAAATTGTCGACACAAATAACCCAAATTA
TGGGCAATCTCCAAATGGCCGTTTAACAAAAGAAGTTGGCTGCCTCTGTT
GGAAGGCTGGAAATCTAGATGTCGAAGGACATATTGATCGAAAGTGCTAT
TGTCCAGGTGAATTAATTTTGGTCAATTCACAAGTGCAAAACCAAACCAC
AAAGGATATGAAGGCATTAAAAGCGAAATTGTATCAAGATATTCTGTACA
TTGCTGAAGGCCACAAACAGAAACGAGAAAACAAAGTAATTGTCAGAATT
GACGGACCACAAATACCTCAAGGCAAGAATGAAACATGGAGTAACAGACC
TTTGGCTATTCCAGCCTGTCCCCCATCTATTAGCAAATCATCGATAATCA
AAGTCTCTTACATGGTTCGTGTGGAGGTTGATGTCCCATGGGGAATCGAT
CCCAAGATTGAAATGCCCATTATTTTGGGTACTGTACCATACAGAGGAAC
ATATGGACAACCACAACAATATGGGTTACCACAAGAACAAATGCCTGTGC
CAGAAAATAaCTTTTCAAACACACCTCAAATGCCACCAGCACCATCAAAT
ATGCTTGGTTACCCAGACATGGCTCCCCCTGCTTATGCAGCAGCTGTTGG
GAGTAGTCGAGTCAATGTTCATCAAGATGACAACAGTGAATTAATGGGAA
ACTCTATGTACATCCCTGCTTACACATTTGCTGCACCTTACAAGGGCTCT
ATGAAGATTGAACAGGGTAGCATGAACCCACAACAGCCAACAGCACCACC
TGCAGGGTATCCCCCTCAACAGCCAGGTTACCCACCTGTCCAACCTGGCT
ACCCACCCACACAACCAGGCTACCCCCCACAACAACCTAATAACCTGATT
GGTTTCGATGGCTCTGCTTATCCAGCTGCGCACCCTGGCTATCAACCACA
ACCTGGAATGGCTGCTGGACCATACTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054940-exon-scaffold_247-1491911889:73959..74596 | TCONS_00054940-exon-scaffold_247-1491911889:73959..74596 | Clytia hemisphaerica | exon |
| TCONS_00054940-exon-scaffold_247-1510915933:73959..74596 | TCONS_00054940-exon-scaffold_247-1510915933:73959..74596 | Clytia hemisphaerica | exon |
| TCONS_00054940-exon-scaffold_247-1575043694:73959..74596 | TCONS_00054940-exon-scaffold_247-1575043694:73959..74596 | Clytia hemisphaerica | exon |
| TCONS_00054940-exon-scaffold_247-1491911889:75884..76135 | TCONS_00054940-exon-scaffold_247-1491911889:75884..76135 | Clytia hemisphaerica | exon |
| TCONS_00054940-exon-scaffold_247-1510915933:75884..76135 | TCONS_00054940-exon-scaffold_247-1510915933:75884..76135 | Clytia hemisphaerica | exon |
| TCONS_00054940-exon-scaffold_247-1575043694:75884..76135 | TCONS_00054940-exon-scaffold_247-1575043694:75884..76135 | Clytia hemisphaerica | exon |
| TCONS_00054940-exon-scaffold_247-1491911889:76519..76683 | TCONS_00054940-exon-scaffold_247-1491911889:76519..76683 | Clytia hemisphaerica | exon |
| TCONS_00054940-exon-scaffold_247-1510915933:76519..76683 | TCONS_00054940-exon-scaffold_247-1510915933:76519..76683 | Clytia hemisphaerica | exon |
| TCONS_00054940-exon-scaffold_247-1575043694:76519..76683 | TCONS_00054940-exon-scaffold_247-1575043694:76519..76683 | Clytia hemisphaerica | exon |
| TCONS_00054940-exon-scaffold_247-1491911889:76938..77114 | TCONS_00054940-exon-scaffold_247-1491911889:76938..77114 | Clytia hemisphaerica | exon |
| TCONS_00054940-exon-scaffold_247-1510915933:76938..77114 | TCONS_00054940-exon-scaffold_247-1510915933:76938..77114 | Clytia hemisphaerica | exon |
| TCONS_00054940-exon-scaffold_247-1575043694:76938..77114 | TCONS_00054940-exon-scaffold_247-1575043694:76938..77114 | Clytia hemisphaerica | exon |
| TCONS_00054940-exon-scaffold_247-1491911889:77751..78005 | TCONS_00054940-exon-scaffold_247-1491911889:77751..78005 | Clytia hemisphaerica | exon |
| TCONS_00054940-exon-scaffold_247-1510915933:77751..78005 | TCONS_00054940-exon-scaffold_247-1510915933:77751..78005 | Clytia hemisphaerica | exon |
| TCONS_00054940-exon-scaffold_247-1575043694:77751..78005 | TCONS_00054940-exon-scaffold_247-1575043694:77751..78005 | Clytia hemisphaerica | exon |
| TCONS_00054940-exon-scaffold_247-1491911889:78434..78618 | TCONS_00054940-exon-scaffold_247-1491911889:78434..78618 | Clytia hemisphaerica | exon |
| TCONS_00054940-exon-scaffold_247-1510915933:78434..78618 | TCONS_00054940-exon-scaffold_247-1510915933:78434..78618 | Clytia hemisphaerica | exon |
| TCONS_00054940-exon-scaffold_247-1575043694:78434..78618 | TCONS_00054940-exon-scaffold_247-1575043694:78434..78618 | Clytia hemisphaerica | exon |
| TCONS_00054940-exon-scaffold_247-1491911889:78915..79643 | TCONS_00054940-exon-scaffold_247-1491911889:78915..79643 | Clytia hemisphaerica | exon |
| TCONS_00054940-exon-scaffold_247-1510915933:78915..79643 | TCONS_00054940-exon-scaffold_247-1510915933:78915..79643 | Clytia hemisphaerica | exon |
| TCONS_00054940-exon-scaffold_247-1575043694:78915..79643 | TCONS_00054940-exon-scaffold_247-1575043694:78915..79643 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_247 | supercontig | scaffold_247:73959..79643 + |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00054940 vs. Swiss-Prot (Human)
Match: ARRD3 (Arrestin domain-containing protein 3 OS=Homo sapiens GN=ARRDC3 PE=1 SV=1) HSP 1 Score: 155.221 bits (391), Expect = 1.529e-40 Identity = 106/311 (34.08%), Postives = 169/311 (54.34%), Query Frame = 2
Query: 518 FSIMLDSNRQVFYPGETVTGNVILDLQGQMSMKGITIEFEGKSFCHWTEQTWEGTGEDRRQ-VTKHIEGKEKYFENKTCLFG-------AISGGHTRIHPHGHFKYPFVFNIPQS-VPSSFEGSHGRIRFELKAEIDIPGKRDIKTRRPITINEIVDTNNPNYGQSPNGRLTKEVGCLCW--KAGNLDVEGHIDRKCYCPGELILVNSQVQNQTTKDMKALKAKLYQDILYIAEGHKQKRENKVIVRIDGPQIPQGKNETWSNRPLAIPACPPXXXXXXXXXXXYMVRVEVDVPWGIDPKIEMPIILGTVP 1417
F + DSN V+ G+TV+G V L++ G++ +K + I G + WTE G+ Q T+ +E YF +K L G + G HT IH G +Y F F +PQ+ + +SFEG HG +R+ +KAE+ P +K ++ T+ E +D N P+ G TKE CW +G + + I+RK Y PGE I + ++++N +++ M KA +YQ + A+G K K +++ + G + GK ETW+ + L IP PSI SII+V Y + V VD+P +D + +P+++GT+P
Sbjct: 13 FDCLNDSNVPVYSSGDTVSGRVNLEVTGEIRVKSLKIHARGHAKVRWTESRNAGSNTAYTQNYTEEVE----YFNHKDILIGHERDDDNSEEGFHT-IH-SGRHEYAFSFELPQTPLATSFEGRHGSVRYWVKAELHRPWLLPVKLKKEFTVFEHIDINTPSLLSPQAG--TKEKTLCCWFCTSGPISLSAKIERKGYTPGESIQIFAEIENCSSR-MVVPKAAIYQTQAFYAKG-KMKEVKQLVANLRGESLSSGKTETWNGKLLKIPPVSPSILDCSIIRVEYSLMVYVDIPGAMDLFLNLPLVIGTIP 313
The following BLAST results are available for this feature:
|
