TCONS_00054941 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054941
Unique NameTCONS_00054941
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1210

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054941 ID=TCONS_00054941|Name=TCONS_00054941|organism=Clytia hemisphaerica|type=transcript|length=1210bp
GAGAAGTAGACACAAAATCCAGTAGTTCTAGAACAACTCCCCGATTTCat
gaatgacgtaatctttcaatttaaaaacaaacgcTTCCCCTTCAttcaga
aaatttaattttttgaggTGAATCTCAACTGAAACTTCCAGCTGCAACTT
TCACTTTTTACACAACCATGGATGCCTTTTTTGGTGAAAGATCTATTTCC
TTATCTGCTTTGACTGATTTTTCAAAGTTggATGTATCTACaaagaaaca
tttgaaaaatgtatATGGTGCCTTATCATTATCCATGCTGTCAGCCAGTG
TTGGTGCTGGTCTTCACTTGTATAGTGGATTGAACTTGgGAATACTTGCT
CTCCTTGGTGGTATTGGATTCATGCTTGGGCTAGCATTCACACCAAATGA
ATCAAAGAACCAAATGACCCGTTTAGGATGTTTGTTAGGTTTTGCAGGCT
GCACAGGTTTGTCAATGGGACCATTATTGGATGCTGTAATCAGTATTAAC
CCCAGCATCGTAACTACAGCATTCTTTGCCACCTGTGTCATCTTCATTTG
TTTCACCTTGAGTGCATTATGGGCTGAGGAAAGAACATATTTGTATCTTG
GTGgCACCCTCCTTTCTGGAATGTCCACATTGTTCTTTCTTGGTTTGATC
AACATCTTTTTCGGTTTCCAACTCCTTTATCAGGTTCATTTGTACGGTGG
CTTGTTATTATTCTGTGGCTTTATCTTGTACGATACACAACTCATCATCG
CCAAACACAAAAATGGAGACAATGATTTCTTATGgCATTCAGTCGATTTG
TTTTTGGATTTCATCAATATCTTCCGAAGAATTATGATCATTCTTGCAAA
CAAAgaaaacaAGAAGAGTAAGAAGAAGAACTGAATTCAATAAGAGATAC
TTGATGCAATGTTATCGCAAATTTATTCCTCAATTCTTGGGTTTTAATAT
GGAAATCAGACTGTACTTTCTTTTTTTGTAGCATCAAAAGTTTATACTTT
GAAGTAATGCAAGNAATGTTATCGCAAATTTATTCCTCAATTTTAATATG
GAAATCAGACTGTACTTTCTTTTTTTGTAGCATCAAAAGTTTATACTTGG
AAGTAATGCAAGCATAATGTACTGTAAAATAAATCATCGTGATCTTTATT
CGAGTAAATAAATATACCATTCTGTTGAAATTCTATTCtttgcattttgt
tttgaaattt
Run BLAST on NCBI

transcript from alignment at scaffold_247:81975..92940+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054941 ID=TCONS_00054941|Name=TCONS_00054941|organism=Clytia hemisphaerica|type=transcript|length=10966bp|location=Sequence derived from alignment at scaffold_247:81975..92940+ (Clytia hemisphaerica)
GAGAAGTAGACACAAAATCCAGTAGTTCTAGAACAACTCCCCGATTTCat
gaatgacgtaatctttcaatttaaaaacaaacgcTTCCCCTTCAttcaga
aaatttaattttttgaggTGAATCTCAACTGAAACTTCCAGCTGCAACTT
TCACTTTTTACACAACCATGGATGCCTTTTTTGGTGAAAGATCTATTTCC
TTATCTGCTTTGACTGATTTTTCAAAGTTGTAAGTATATttataaagttt
attttttgtatTCTGTACATAACGTCATGTTCCATCGgcatcataaaaat
cattttgattgacagagttgaaattttcaaaaattgtgtttATTATACCA
GTATGGCATGATACCCTATGTTCAAGGACCTCCTTAATATGAAGGGTTCA
TCCTTCTGAGTTGCAGTTTAGTCAGCCAATTTTTTGCCCTGGTTATTCTA
Aatcaatgggccattccagaatttgtctgtaaccatggaggtataaagaa
acaggagaagtatgctattgtaaccatgctcgccctacgattagaaaaat
tacgaggtatgcatgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNataactttttattttctg
gctggagaaaatatcttttcaaaacaaaatttaatggatgacaaaattga
acgcaaacttatttcgtggagctaaattttattctattctcgtatattag
acggctagaaatcttcgatgctgatagtaagaatgttcagagcaaacttg
agttctactaaaaagtcgtatttcttcgggcgagcctagaatttcttttg
atttattacataaaagaaatcaaaagactttaacgaccaattaccgacaa
attcatctcctgtctttctttatacctctatgctgTAACACTGTTACTAA
CAGGGGGGcagacgacacaggatttccgagggcaaaagttttcaccaaaa
ttcgaaatttccaaggcgagagaagaaaatgtatgaatttccagggcaat
tgaatttaaaaacagtgtagctggaacctcaatattccaggattagaaaa
agctaNaacagttatttggggggtcggatttaggcagggttgtcggattt
aggaccactcacggtacctgtttatcttttttctttaaagaatcaacaag
ccatcaacatcgataaattacacacatttcctcagaaactttgaaaatta
tctgccattatgactttcttgaagccattctgaaattaaccaatcaccaa
tcgggttatgtatcaGAACTCCTATGGGaattcttttccgagatttgtaa
aatagctaagtcggcgaAAAAACTTTTCCCAGGGGTTTAAGGAAAAAAta
gaactgctatcatttgttttttatttaaccatatatttaaatttacgCTC
AAAAacacttaaataaataagttaacaatattcaatatactatttgtatc
tctcagaaaataaacacttacagaacgacatcaTTTGGAacacccccgta
tttggaccattctattgtgggcgcaaaatagggaggaaactaagtagcac
cctcagtgcaagattactgcctcatctttattcgcccgtgTGAGAATgca
agctaatcatttttttctcaagcGCTCTTAAGGGGAAAAGTaaagtgatc
aatattctttgtaggaaaaacgtcagaaacaaacccaaagatcaaaagat
gtattttgttgttgacaatctatcctgtgaagatgaaaaaatttctgcta
caTTTCTGtaatgcgtttttttcggaacgctaattcttgatctttccttt
aaggtaaagaggttgcgagatttgggttagcgaggcaaaaattgctaaaa
agctggtaaaatcgtattgctcaaaaatcaaagttccagcctcactgaaa
aaggcaaaaaagagtggaattacCGATGCATTTTggaaaagtacatggat
ttttattggaatttccgaccaccactggaaaagaaaaagtatttccgagg
ctagaaaaaaattaaaaatgcactTCATccgacggggggtaacaaaaatt
ttctggaattgCCCAATGTAAAAgcatttttatttgcaaaatcTGAACCT
TACACATTGCAAGTTCACAAATATGGCTAGATATTGCTGCAACTGAGTTC
ATAACAAATTAACTTCCACTGTTAGAAGTCATAATTTTCCGTTGTCAAAG
CAGAATTATGAATCTCAAAAGAACTCTTTTAGCATTTTGATTAATAGCCT
TGATAtccagacaaacaaacaaaataaaataaaatagcaaaagaacaaag
gaattacggGGGAATTATAACCATAGCCACCATTTTGCAGCAATGAAGAA
TCGTGATtttacggaaatgggaatcctcatattgaataaagcatcttctg
aaaaatttcattcttttaccataaatgcgaaaatgaaaaacgaagaagct
tTTGTTTTCTGATCATCTTTTTAATCTaccatgaagtgttataaaattct
ttATAGAAAGACACATTCTCCTACGGTGAGGCTTCGAAAAAATGACGTAG
AAAAATGCTGTTATATAAAGAGAATGTCATTTTATCTTAACAATTTCGTA
AACTACGTCACAACCATGGAGTGcttacttttagttttatgacttgttct
cactcgtttggtttctggtaataaaaagaaagttgttattgtgaactttg
aacatgcttaaaatcgaggtactttcactaactgcctttatgaatgtggc
tgatgtttggatgtagtttaaagtagttttgaaaggcttttgattttgta
aaagaggttttatggtaagtaattatgtgtgtctgcctgggtttccaaag
ttttgagattctgtcaacaagggtttactCAGAGGCTGTGTCATTCAAAA
TGTATATACCAGACTTTTTTAGCTGCATCAGACAaagttttagaaacttt
gtattttgaggtaagagtttttttttctgaaattttgagtctggataccc
aggctcaTTGATTGAGTATCTTTGACAATGGAGAGATATATAATATAAAG
GAGAGATTCATCCACTTAACCCTTGGACAAACGCATGAATGatgaataaa
aatttaaattttagcaTGCATAAGTTCTTAGNATAACAAATTAACTTCCA
CTGTTAGAAGTCATAATTTTCCGTTGTCAAAGCAGAATTATGAATCTCAA
AAGAACTCttttagcattttgattgaTAGCCTTGATAcccagacaaacaa
acaaaataaaataaaatagcaaaagaacaaaggaattacggGGGAATTAT
AACCATAGCCACCATTTTGCAGCAATGAAGAATCGTGATtttacggaaat
gggaatcctcatattgaataaagcatcttctgaaaaatttcattctttta
ccataaatgcgaaaatgaaaaacgaagaagcttTTGTTTTCTGATCATCT
TTTTAATCTaccatgaagtgttataaaattctttATAGAAAGACACATTC
TCCTACGGTGAGGCTTCGAAAAAATGACGTAGAAAAATGCTGTTATATAA
AGAGAATGTCATTTTATCTTAACAATTTCGTAAACTACGTCACAACCATG
GAGTGcttacttttagttttatgacttgttctcactcgtttggtttctgg
taataaaaagaaagttgttattgtgaactttgaacatgcttaaaatcgag
gtactttcactaactgcctttatgaatgtggctgatgtttggatgtagtt
taaagtagttttgaaaggcttttgattttgtaaaagaggttttatggtaa
gtaattatgtgtgtctgcctgggtttccaaagttttgagattctgtcaac
aagggtttactCAGAGGCTGTGTCATTCAAAATGTATATACCAGACTTTT
TTAGCTGCATCAGACAaagttttagaaactttgtattttgaggtaagagt
ttttttttctgaaattttgagtctggatacccaggctcaTTGATTGAGTA
TCTTTGACAATGGAGAGATATATAATATAAAGGAGAGATTCATCCACTTA
ACCCTTGGACAAATCTCGTTGTAAAGGTTTATCttacagaaaaatattca
ttttcctaaaatacttatttttagatttttccttTTGCCTTAGCAACGaa
gatatttgaatttttcgcGCATGAATGatgaataaaaatttaaattttag
caTGCATAAGTTCTTATGCATTTCTAAAGTATGTtgaatctttgattttt
tcagggATGTATCTACaaagaaacatttgaaaaatgtatATGGTGCCTTA
TCATTATCCATGCTGTCAGCCAGTGTTGGTGCTGGTCTTCACTTGTATAG
TGGATTGAACTTGGTGAGTTGAATGATTGTCAATCTACCATATACaatgt
gtcccaaaaaaagcacagttttatataaagtaaaatcctcattaTCTAGA
CTAGGCTTAAAATTTTCTGTTTAAGCAATACGATATTGGattcccaagat
gattgaatagggTTTTAGATATTGAAACGTGAAgataagtcataaaattt
ggcataaattatgaggattttcctttatataaaaatgtgtTAGTTTTTTC
CGGAAATGATGTACATGATAATATGCTGAGTCtgaatttcaattaaaaaa
cattGTTCGTTAGCTAAACCATTCACAAAATATACATACAGGCCAATCAA
TTTATGCAATTGAGTAATCAGTAATAATTATTATAATGATACATTATTAt
tgatttcaaagattttatttagattttgattaatttctAGGATCAGATAT
AATATAGAGCTgagccaaaaatatttttaaaatttttctaggGAATACTT
GCTCTCCTTGGTGGTATTGGATTCATGCTTGGGCTAGCATTCACACCAAA
TGAATCAAAGAACCAAATGACCCGTTTAGGTATCTATGATTATTTGAAAC
TCAAATCTTTTTAGATGCATGATTCATTTTCCACTCAAAATATTTCAGCT
AATACAGATCATTTTATGGAatttcacgtttttttaaaCGCTTCTGCTCA
ACTTTTTCTGTTAATCTAAGAAACTAATAAAGAATAATTTAtaagttcat
ttttcaaatgtaaaaaagaaatttaccaAAGGAATAGGAGAGATTAGTTT
AGCTGATCTCCATATAGAGTAAAAATTGGTTGAAGAATGGCCATTCTCAC
TATCAATATGTAAAGTTTGATATTCTTGCTCTAATGAAAATTTCCTCGTC
AAGTTTAACGAATATATCGTCAATTTCAAACTGCCCCAAACTGGTTAAAA
ACTAAGGTCATGCAACGTATTGAAAGTAGAAGAAATGcagtataactttt
ttttttcattacagGATGTTTGTTAGGTTTTGCAGGCTGCACAGGTTAGT
GGTGTCTTTACTTCATTGAAATTTCACGGTTAGGTCAATATTAGATATTA
TCAAATGACTTCTCAGGAATGTTgtgaattttgtgattttttgatctcac
gaaagtttctgctcgtgaaAACTAACATGTCTAAAGTATTTCTTGTATGA
TTTTCCACTTGAAGATTCCCCTTAAAATTGTCTTCAATCTTTGCTTGTTA
GGTTTGTCAATGGGACCATTATTGGATGCTGTAATCAGTATTAACCCCAG
GTATGACATAATTCTATAATATTATcattattttacatttttaaaaatac
tttaaacTATAACGATCGCTTTTCCAACCAAATAGTGGATGTCCGGTGTC
agataagaataattttttacAACCAGACAACCCCAACACCGGACTCATGG
AAGTCCGAAGTCCGATGTGTTCGGTGCACATTAATTTTTTCCGACGCATG
TCCGGTGCCTAGAGCTCTTGACATTTAACACCGGAATTACCACGTTCGGT
GTAGCGGAAGGATACTTTTTGACATCGGACTGTACGGTGTGCCGGTAGGG
TCGTCAAATACACGATCATTTTTTTCTAACAATACTAACTTtttcactat
atatatatatttaaatATCTACAAAGTGTTTTACAGTGTACCAGAGCGTA
CTTATGTTTTTTTCTCGTCTTTTTCTACAAAGCATCGTAACTACAGCATT
CTTTGCCACCTGTGTCATCTTCATTTGTTTCACCTTGAGTGCATTATGGG
CTGAGGAAAGAACATATTTGTATCTTGGTGGTAAGCTTTTAATTATTGCA
ATCATTTGTTTACTTCCGGGTACCTAATAGCGGAGggcccccgctaatta
atttttcgaacattttccacccaggacagaATTGCACTCCGAGaccatcc
tcactggattttttaacctggAAACAATAAAGTTACTATCCCCTTGGAAG
AACTTCCACCGAGGCTGTTAGCcaggggtgttttaaagtcTCTTTGAGAT
ACAGGATAAAAACGATCAACGCGCATGTTACTTGGACTTAAATTTATAAA
ATCATCGTTTTGATGAATAATTATCTTTTAGGCACCCTCCTTTCTGGAAT
GTCCACATTGTTCTTTCTTGGTTTGATCAACATCTTTTTTGGTTTCCAAC
TCCTTTACCAGGTAACAGATCTAATCCTCGACTTTCATGTTTTGCCCTTT
TGTGTTATTCAAGAAGAAAAGTCTTTTCATCGAATGAACTGAAGAAATAT
TTTAGAGGATCATGTTATACATATATGAAAGATATCCATTCGAACACCAG
CCTTGATTTCGACTAAAACCTCAGATGGTTCAAGTACATGTCGATTTCAA
GCTTTAAATGGTCAGCTTAAAAAGGAACATTTCAAAGTTCAACATGAAAA
TCCGAAATAAGAACAGCTGAGAACATTATTAAGTGGTTCTTTTNAGCACC
TCACTAAAagccgggatttttcatctcgtttcttagtgagttccactttg
acgattttcgaaaaatagaagcctttcaagtgttttgacgcaaattcgct
actgcaggagcttcgaaagttaaaagtgacgtcaaaaaagacgttagagc
ccgaaaacccgggctccaaacattcgaaaaagtggcaaagtggaatagac
ggcaattgcgtaaaaaaaacgCGGATGACGCCTAGTATAGGCTATAATCC
CctcggctattaggtacccgagagtaggtagACTTTTCAATTTGTTAAGT
ATTTTTGAATTAATAATTTGTCATCATTTTCGTAGGGGCCTAGCTCGGGC
TTgtgattttgactttgtttttatctcaaTTTAAAATTCAgtggaaaaaa
ttgcactccgaaACCATCCGCACTGGATTTTTTGACCTGGAAACAATAAA
GTTTCTATCCCCTTGGAACAATATCCACCGAGGCTGTTAGACATGGGTGT
TTTAAAGTCTCTTTTGAGATACACGATAAAAACGAACAAGGCACATGTTA
CTTAATGTAAAATCATCGTTTTgatgaataattattttttaggCACCCTC
CTTTCTGGAATGTCCACATTGTTCTTTCTTGGTTTGATCAACATCTTTTT
CGGTTTCCAACTCCTTTATCAGGTAACAGATCCTATCCTCGATTTTCATG
TTTTGCTCTTTTGTgttattcaagaaaaaatgtcttttcatcgAATGAAT
TGAAGAGGTACTTTAGAGGATCGTGTTTAATTTGTAATACATATATGAAA
GATATTAATTGAAACACCAGGCTTGATTTGGACTAAAACCTATGAATGAA
TTAAGACTAATGTGAGGCTCAGGTGTCGATTTCAAGCTTTAAATGATCAG
CTTAAAAAGGAACATTTCAAAGTTCAACATGTAAATCCAAAATAAGGACA
GCTGAGAACAGTgactggttcttataaataaaaccttattttaaaGCAAT
ACACCTATTAAATTCTTAATCGTGAGAAGGCTGGGTTGGAGTTTACCCAG
AAGAATCAACGTTGAAACCATGTTCGGTTTCGTCAGGTTTCgtaaaccgg
ttttttgacgtttccaattttgacgttcactCAGTGTTTCgaaaccgttt
cgtttcggagcgaagcATGGAACTTAGCGTTAGAACTTGGTCTGAAACAT
CTGTATCTTTAAGGAAATCCATGCAAAGACTTCGGGCATTTGACGTCATC
TCTTCATGGTAAACTCTAACCAAGTTTTCTCACGCAGAAAGGGTTAATAA
ATATATAGCCTAAGGCTGAAACTCTAAACGTGTGACCTGTATTTAACtcg
atattttttattcatgatatgcaccaatagctgattggttgtaagtgacg
taaaatcagtcaatacgtcacattcaaccaatcagctgttgggtccgttg
aagacattacaatggtaCATATCATGACTATGGCATTTTTATCACGTTTA
GGTTCATTTGTACGGTGGCTTGTTATTATTCTGTGGCTTTATCTTGTACG
ATACACAACTCATCATCGCCAAACACAAAAATGGAGACAATGATTTCTTA
TGGTAAGTAATAAGTTTTTTGTTTCTGTTCTTGTTCCTGTCTTACTGAAT
AaataaaaagagatttttttcggTTTTAAACGTCCCAATGGGAATAGTTA
AGTAGCACATTTTTTAATTGTCTTCTTCTGATTTTCTCTATACATttctc
cgggggggggggggggcccggggTTTGggagttttaaaaattttttgtcc
ctggggggggtgatttttttttttttttggttttttcttttcttttcccc
gggggggggggtctctctaggtttgcgagatttcaaaaatttatgatcCT
TGAGGgagttcatttttgattttcgtagtTTTGGAACCCTTGTAGAGACT
CAATTGGTTTTTGTACACCTTTGAAGGACTTTCGAGTGTGTGAAAAAGGG
ATCCTAATGGTTGgtacatacccggcacccattttgctaTGTATCCTCCC
CCGGGACATTATTCTATAAACCCTTTGACATTTCTTTCCTCCGGTGTGTT
AATTTTAAGTTTATATCTAAATTTAATCTTGACAATTGTTCTGTTAattc
tttcttcatttttaggCATTCAGTCGATTTGTTTTTGGATTTCATCAATA
TCTTCCGAAGAATTATGATCATTCTTGCAAACAAAGTAAGGGTTTCATTA
TcaacatttcaaatttctctttcaatttctttgaaCATTTGTTGCAACTT
TTACATAAAAAGAATGGGCGAAATTAATATTATTTTTATGTGGGGTGAAG
GAtgtattggatattttgtccgggggctACCccctgaaaaatctgcaaag
tTTGCCTTGCTTTTGGGACAAATTTGCTCTGTTTatgggtaattttgaat
gtcctgGGGTTAACTGATGCttttccgggggtaaatttccaaaagacaTC
TACGTGACATTGAAAATCTTAAAACCCCTGGAAATGAACCATTCTACTTT
GCAGTATTGAACCATTGAACACGATAATGTCtcttgaaaactttgaaagc
ttcttgaaaatcttgaaaagcaTGATCATCATAGCATGCGTTTGTCTTGT
TTTTTGTTCAGATTATTACAGCATTTGAGACTTTGTTTTACCTTACACAA
ACCTTTGAAACAGAGAGCAAATGGAGAGTTTGATTTAAAGAAGCATCGAA
ACTATCCAAATGCCGCGACAAAATAAGTTGAACCATCTGAAACTACCTGT
ACCATCATCCCTTCCGATAGTACTATCAGAGACTCTGGCTTCATAGATAA
AATAATTAATTGCAGTCGTTATCATAATATTTAAAGATCATTTTCTGtgc
tttttttcaggaaaacaAGAAGAGTAAGAAGAAGAACTGAATTCAATAAG
AGATACTTGATGCAATGTTATCGCAAATTTATTCCTCAATTCTTGGGTTT
TAATATGGAAATCAGACTGTACTTTCTTTTTTTGTAGCATCAAAAGTTTA
TACTTTGAAGTAATGCAAGNAATGTTATCGCAAATTTATTCCTCAATTTT
AATATGGAAATCAGACTGTACTTTCTTTTTTTGTAGCATCAAAAGTTTAT
ACTTGGAAGTAATGCAAGCATAATGTACTGTAAAATAAATCATCGTGATC
TTTATTCGAGTAAATAAATATACCATTCTGTTGAAATTCTATTCtttgca
ttttgttttgaaattt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034627XLOC_034627Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054941-exon-scaffold_247-1491911889:81975..82203TCONS_00054941-exon-scaffold_247-1491911889:81975..82203Clytia hemisphaericaexon
TCONS_00054941-exon-scaffold_247-1510915933:81975..82203TCONS_00054941-exon-scaffold_247-1510915933:81975..82203Clytia hemisphaericaexon
TCONS_00054941-exon-scaffold_247-1575043694:81975..82203TCONS_00054941-exon-scaffold_247-1575043694:81975..82203Clytia hemisphaericaexon
TCONS_00054941-exon-scaffold_247-1491911889:87079..87187TCONS_00054941-exon-scaffold_247-1491911889:87079..87187Clytia hemisphaericaexon
TCONS_00054941-exon-scaffold_247-1510915933:87079..87187TCONS_00054941-exon-scaffold_247-1510915933:87079..87187Clytia hemisphaericaexon
TCONS_00054941-exon-scaffold_247-1575043694:87079..87187TCONS_00054941-exon-scaffold_247-1575043694:87079..87187Clytia hemisphaericaexon
TCONS_00054941-exon-scaffold_247-1491911889:87666..87753TCONS_00054941-exon-scaffold_247-1491911889:87666..87753Clytia hemisphaericaexon
TCONS_00054941-exon-scaffold_247-1510915933:87666..87753TCONS_00054941-exon-scaffold_247-1510915933:87666..87753Clytia hemisphaericaexon
TCONS_00054941-exon-scaffold_247-1575043694:87666..87753TCONS_00054941-exon-scaffold_247-1575043694:87666..87753Clytia hemisphaericaexon
TCONS_00054941-exon-scaffold_247-1491911889:88189..88218TCONS_00054941-exon-scaffold_247-1491911889:88189..88218Clytia hemisphaericaexon
TCONS_00054941-exon-scaffold_247-1510915933:88189..88218TCONS_00054941-exon-scaffold_247-1510915933:88189..88218Clytia hemisphaericaexon
TCONS_00054941-exon-scaffold_247-1575043694:88189..88218TCONS_00054941-exon-scaffold_247-1575043694:88189..88218Clytia hemisphaericaexon
TCONS_00054941-exon-scaffold_247-1491911889:88426..88474TCONS_00054941-exon-scaffold_247-1491911889:88426..88474Clytia hemisphaericaexon
TCONS_00054941-exon-scaffold_247-1510915933:88426..88474TCONS_00054941-exon-scaffold_247-1510915933:88426..88474Clytia hemisphaericaexon
TCONS_00054941-exon-scaffold_247-1575043694:88426..88474TCONS_00054941-exon-scaffold_247-1575043694:88426..88474Clytia hemisphaericaexon
TCONS_00054941-exon-scaffold_247-1491911889:88907..89004TCONS_00054941-exon-scaffold_247-1491911889:88907..89004Clytia hemisphaericaexon
TCONS_00054941-exon-scaffold_247-1510915933:88907..89004TCONS_00054941-exon-scaffold_247-1510915933:88907..89004Clytia hemisphaericaexon
TCONS_00054941-exon-scaffold_247-1575043694:88907..89004TCONS_00054941-exon-scaffold_247-1575043694:88907..89004Clytia hemisphaericaexon
TCONS_00054941-exon-scaffold_247-1491911889:90267..90346TCONS_00054941-exon-scaffold_247-1491911889:90267..90346Clytia hemisphaericaexon
TCONS_00054941-exon-scaffold_247-1510915933:90267..90346TCONS_00054941-exon-scaffold_247-1510915933:90267..90346Clytia hemisphaericaexon
TCONS_00054941-exon-scaffold_247-1575043694:90267..90346TCONS_00054941-exon-scaffold_247-1575043694:90267..90346Clytia hemisphaericaexon
TCONS_00054941-exon-scaffold_247-1491911889:91176..91276TCONS_00054941-exon-scaffold_247-1491911889:91176..91276Clytia hemisphaericaexon
TCONS_00054941-exon-scaffold_247-1510915933:91176..91276TCONS_00054941-exon-scaffold_247-1510915933:91176..91276Clytia hemisphaericaexon
TCONS_00054941-exon-scaffold_247-1575043694:91176..91276TCONS_00054941-exon-scaffold_247-1575043694:91176..91276Clytia hemisphaericaexon
TCONS_00054941-exon-scaffold_247-1491911889:91840..91909TCONS_00054941-exon-scaffold_247-1491911889:91840..91909Clytia hemisphaericaexon
TCONS_00054941-exon-scaffold_247-1510915933:91840..91909TCONS_00054941-exon-scaffold_247-1510915933:91840..91909Clytia hemisphaericaexon
TCONS_00054941-exon-scaffold_247-1575043694:91840..91909TCONS_00054941-exon-scaffold_247-1575043694:91840..91909Clytia hemisphaericaexon
TCONS_00054941-exon-scaffold_247-1491911889:92585..92940TCONS_00054941-exon-scaffold_247-1491911889:92585..92940Clytia hemisphaericaexon
TCONS_00054941-exon-scaffold_247-1510915933:92585..92940TCONS_00054941-exon-scaffold_247-1510915933:92585..92940Clytia hemisphaericaexon
TCONS_00054941-exon-scaffold_247-1575043694:92585..92940TCONS_00054941-exon-scaffold_247-1575043694:92585..92940Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_247supercontigscaffold_247:81975..92940 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
21.31	21.3555	19.35	9.80321	4.63054	2.4393	2.94307	5.32732	2.44696	0	2.31923	1.52449	0.972356	0.790449	3.29968	0.893873	1.71834	1.13468	0	6.3655	8.23447	6.28954	10.0814	10.2798	0	4.23988	20.0804	23.4545	14.2785	7.56839
Blast
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BLAST of TCONS_00054941 vs. Swiss-Prot (Human)
Match: BI1 (Bax inhibitor 1 OS=Homo sapiens GN=TMBIM6 PE=1 SV=2)

HSP 1 Score: 166.392 bits (420), Expect = 4.766e-48
Identity = 105/222 (47.30%), Postives = 149/222 (67.12%), Query Frame = 3 
Query:  186 ERSISLSALTDFSKLDVSTKKHLKNVYGALSLSMLSASVGAGLHLYSXXXXXXXXXXXXXXXXXX-XXXTPNESKNQMTRLGCLLGFAGCTGLSMGPLLDAVISINPSIVTTAFFATCVIFICFTLSALWAEERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYQVHLYGGLLLFCGFILYDTQLIIAKHKNGDNDFLWHSVDLFLDFINIFRRIMIILA 848
            +R I+  AL  FS +  ST++HLK VY + +L M  A+ GA +H+ +      L    G   ++  L  TP+  + +  RLG L GFA  TG+ +GP L+  I++NPSI+ TAF  T +IF CFTLSAL+A  R+YL+LGG L+S +S L    L N+FFG   L+Q +LY GL++ CGF+L+DTQLII K ++GD D++WH +DLFLDFI +FR++M+ILA
Sbjct:    5 DRKINFDALLKFSHITPSTQQHLKKVYASFALCMFVAAAGAYVHMVTHFIQAGLLSALGSLILMIWLMATPHSHETEQKRLGLLAGFAFLTGVGLGPALEFCIAVNPSILPTAFMGTAMIFTCFTLSALYARRRSYLFLGGILMSALSLLLLSSLGNVFFGSIWLFQANLYVGLVVMCGFVLFDTQLIIEKAEHGDQDYIWHCIDLFLDFITVFRKLMMILA 226
The following BLAST results are available for this feature:
BLAST of TCONS_00054941 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
BI14.766e-4847.30Bax inhibitor 1 OS=Homo sapiens GN=TMBIM6 PE=1 SV=... [more]
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