TCONS_00054942 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054942
Unique NameTCONS_00054942
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1186

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054942 ID=TCONS_00054942|Name=TCONS_00054942|organism=Clytia hemisphaerica|type=transcript|length=1186bp
GTTCTAGAACAACTCCCCGATTTCatgaatgacgtaatctttcaatttaa
aaacaaacgcTTCCCCTTCAttcagaaaatttaattttttgaggTGAATC
TCAACTGAAACTTCCAGCTGCAACTTTCACTTTTTACACAACCATGGATG
CCTTTTTTGGTGAAAGATCTATTTCCTTATCTGCTTTGACTGATTTTTCA
AAGTTggATGTATCTACaaagaaacatttgaaaaatgtatATGGTGCCTT
ATCATTATCCATGCTGTCAGCCAGTGTTGGTGCTGGTCTTCACTTGTATA
GTGGATTGAACTTGgGAATACTTGCTCTCCTTGGTGGTATTGGATTCATG
CTTGGGCTAGCATTCACACCAAATGAATCAAAGAACCAAATGACCCGTTT
AGGATGTTTGTTAGGTTTTGCAGGCTGCACAGGTTTGTCAATGGGACCAT
TATTGGATGCTGTAATCAGTATTAACCCCAGCATCGTAACTACAGCATTC
TTTGCCACCTGTGTCATCTTCATTTGTTTCACCTTGAGTGCATTATGGGC
TGAGGAAAGAACATATTTGTATCTTGGTGGCACCCTCCTTTCTGGAATGT
CCACATTGTTCTTTCTTGGTTTGATCAACATCTTTTTCGGTTTCCAACTC
CTTTATCAGGTTCATTTGTACGGTGGCTTGTTATTATTCTGTGGCTTTAT
CTTGTACGATACACAACTCATCATCGCCAAACACAAAAATGGAGACAATG
ATTTCTTATGgCATTCAGTCGATTTGTTTTTGGATTTCATCAATATCTTC
CGAAGAATTATGATCATTCTTGCAAACAAAgaaaacaAGAAGAGTAAGAA
GAAGAACTGAATTCAATAAGAGATACTTGATGCAATGTTATCGCAAATTT
ATTCCTCAATTCTTGGGTTTTAATATGGAAATCAGACTGTACTTTCTTTT
TTTGTAGCATCAAAAGTTTATACTTTGAAGTAATGCAAGNAATGTTATCG
CAAATTTATTCCTCAATTTTAATATGGAAATCAGACTGTACTTTCTTTTT
TTGTAGCATCAAAAGTTTATACTTGGAAGTAATGCAAGCATAATGTACTG
TAAAATAAATCATCGTGATCTTTATTCGAGTAAATAAATATACCATTCTG
TTGAAATTCTATTCtttgcattttgttttgaaattt
Run BLAST on NCBI

transcript from alignment at scaffold_247:81999..92940+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054942 ID=TCONS_00054942|Name=TCONS_00054942|organism=Clytia hemisphaerica|type=transcript|length=10942bp|location=Sequence derived from alignment at scaffold_247:81999..92940+ (Clytia hemisphaerica)
GTTCTAGAACAACTCCCCGATTTCatgaatgacgtaatctttcaatttaa
aaacaaacgcTTCCCCTTCAttcagaaaatttaattttttgaggTGAATC
TCAACTGAAACTTCCAGCTGCAACTTTCACTTTTTACACAACCATGGATG
CCTTTTTTGGTGAAAGATCTATTTCCTTATCTGCTTTGACTGATTTTTCA
AAGTTGTAAGTATATttataaagtttattttttgtatTCTGTACATAACG
TCATGTTCCATCGgcatcataaaaatcattttgattgacagagttgaaat
tttcaaaaattgtgtttATTATACCAGTATGGCATGATACCCTATGTTCA
AGGACCTCCTTAATATGAAGGGTTCATCCTTCTGAGTTGCAGTTTAGTCA
GCCAATTTTTTGCCCTGGTTATTCTAAatcaatgggccattccagaattt
gtctgtaaccatggaggtataaagaaacaggagaagtatgctattgtaac
catgctcgccctacgattagaaaaattacgaggtatgcatgNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNataactttttattttctggctggagaaaatatcttttcaaaa
caaaatttaatggatgacaaaattgaacgcaaacttatttcgtggagcta
aattttattctattctcgtatattagacggctagaaatcttcgatgctga
tagtaagaatgttcagagcaaacttgagttctactaaaaagtcgtatttc
ttcgggcgagcctagaatttcttttgatttattacataaaagaaatcaaa
agactttaacgaccaattaccgacaaattcatctcctgtctttctttata
cctctatgctgTAACACTGTTACTAACAGGGGGGcagacgacacaggatt
tccgagggcaaaagttttcaccaaaattcgaaatttccaaggcgagagaa
gaaaatgtatgaatttccagggcaattgaatttaaaaacagtgtagctgg
aacctcaatattccaggattagaaaaagctaNaacagttatttggggggt
cggatttaggcagggttgtcggatttaggaccactcacggtacctgttta
tcttttttctttaaagaatcaacaagccatcaacatcgataaattacaca
catttcctcagaaactttgaaaattatctgccattatgactttcttgaag
ccattctgaaattaaccaatcaccaatcgggttatgtatcaGAACTCCTA
TGGGaattcttttccgagatttgtaaaatagctaagtcggcgaAAAAACT
TTTCCCAGGGGTTTAAGGAAAAAAtagaactgctatcatttgttttttat
ttaaccatatatttaaatttacgCTCAAAAacacttaaataaataagtta
acaatattcaatatactatttgtatctctcagaaaataaacacttacaga
acgacatcaTTTGGAacacccccgtatttggaccattctattgtgggcgc
aaaatagggaggaaactaagtagcaccctcagtgcaagattactgcctca
tctttattcgcccgtgTGAGAATgcaagctaatcatttttttctcaagcG
CTCTTAAGGGGAAAAGTaaagtgatcaatattctttgtaggaaaaacgtc
agaaacaaacccaaagatcaaaagatgtattttgttgttgacaatctatc
ctgtgaagatgaaaaaatttctgctacaTTTCTGtaatgcgtttttttcg
gaacgctaattcttgatctttcctttaaggtaaagaggttgcgagatttg
ggttagcgaggcaaaaattgctaaaaagctggtaaaatcgtattgctcaa
aaatcaaagttccagcctcactgaaaaaggcaaaaaagagtggaattacC
GATGCATTTTggaaaagtacatggatttttattggaatttccgaccacca
ctggaaaagaaaaagtatttccgaggctagaaaaaaattaaaaatgcact
TCATccgacggggggtaacaaaaattttctggaattgCCCAATGTAAAAg
catttttatttgcaaaatcTGAACCTTACACATTGCAAGTTCACAAATAT
GGCTAGATATTGCTGCAACTGAGTTCATAACAAATTAACTTCCACTGTTA
GAAGTCATAATTTTCCGTTGTCAAAGCAGAATTATGAATCTCAAAAGAAC
TCTTTTAGCATTTTGATTAATAGCCTTGATAtccagacaaacaaacaaaa
taaaataaaatagcaaaagaacaaaggaattacggGGGAATTATAACCAT
AGCCACCATTTTGCAGCAATGAAGAATCGTGATtttacggaaatgggaat
cctcatattgaataaagcatcttctgaaaaatttcattcttttaccataa
atgcgaaaatgaaaaacgaagaagcttTTGTTTTCTGATCATCTTTTTAA
TCTaccatgaagtgttataaaattctttATAGAAAGACACATTCTCCTAC
GGTGAGGCTTCGAAAAAATGACGTAGAAAAATGCTGTTATATAAAGAGAA
TGTCATTTTATCTTAACAATTTCGTAAACTACGTCACAACCATGGAGTGc
ttacttttagttttatgacttgttctcactcgtttggtttctggtaataa
aaagaaagttgttattgtgaactttgaacatgcttaaaatcgaggtactt
tcactaactgcctttatgaatgtggctgatgtttggatgtagtttaaagt
agttttgaaaggcttttgattttgtaaaagaggttttatggtaagtaatt
atgtgtgtctgcctgggtttccaaagttttgagattctgtcaacaagggt
ttactCAGAGGCTGTGTCATTCAAAATGTATATACCAGACTTTTTTAGCT
GCATCAGACAaagttttagaaactttgtattttgaggtaagagttttttt
ttctgaaattttgagtctggatacccaggctcaTTGATTGAGTATCTTTG
ACAATGGAGAGATATATAATATAAAGGAGAGATTCATCCACTTAACCCTT
GGACAAACGCATGAATGatgaataaaaatttaaattttagcaTGCATAAG
TTCTTAGNATAACAAATTAACTTCCACTGTTAGAAGTCATAATTTTCCGT
TGTCAAAGCAGAATTATGAATCTCAAAAGAACTCttttagcattttgatt
gaTAGCCTTGATAcccagacaaacaaacaaaataaaataaaatagcaaaa
gaacaaaggaattacggGGGAATTATAACCATAGCCACCATTTTGCAGCA
ATGAAGAATCGTGATtttacggaaatgggaatcctcatattgaataaagc
atcttctgaaaaatttcattcttttaccataaatgcgaaaatgaaaaacg
aagaagcttTTGTTTTCTGATCATCTTTTTAATCTaccatgaagtgttat
aaaattctttATAGAAAGACACATTCTCCTACGGTGAGGCTTCGAAAAAA
TGACGTAGAAAAATGCTGTTATATAAAGAGAATGTCATTTTATCTTAACA
ATTTCGTAAACTACGTCACAACCATGGAGTGcttacttttagttttatga
cttgttctcactcgtttggtttctggtaataaaaagaaagttgttattgt
gaactttgaacatgcttaaaatcgaggtactttcactaactgcctttatg
aatgtggctgatgtttggatgtagtttaaagtagttttgaaaggcttttg
attttgtaaaagaggttttatggtaagtaattatgtgtgtctgcctgggt
ttccaaagttttgagattctgtcaacaagggtttactCAGAGGCTGTGTC
ATTCAAAATGTATATACCAGACTTTTTTAGCTGCATCAGACAaagtttta
gaaactttgtattttgaggtaagagtttttttttctgaaattttgagtct
ggatacccaggctcaTTGATTGAGTATCTTTGACAATGGAGAGATATATA
ATATAAAGGAGAGATTCATCCACTTAACCCTTGGACAAATCTCGTTGTAA
AGGTTTATCttacagaaaaatattcattttcctaaaatacttatttttag
atttttccttTTGCCTTAGCAACGaagatatttgaatttttcgcGCATGA
ATGatgaataaaaatttaaattttagcaTGCATAAGTTCTTATGCATTTC
TAAAGTATGTtgaatctttgattttttcagggATGTATCTACaaagaaac
atttgaaaaatgtatATGGTGCCTTATCATTATCCATGCTGTCAGCCAGT
GTTGGTGCTGGTCTTCACTTGTATAGTGGATTGAACTTGGTGAGTTGAAT
GATTGTCAATCTACCATATACaatgtgtcccaaaaaaagcacagttttat
ataaagtaaaatcctcattaTCTAGACTAGGCTTAAAATTTTCTGTTTAA
GCAATACGATATTGGattcccaagatgattgaatagggTTTTAGATATTG
AAACGTGAAgataagtcataaaatttggcataaattatgaggattttcct
ttatataaaaatgtgtTAGTTTTTTCCGGAAATGATGTACATGATAATAT
GCTGAGTCtgaatttcaattaaaaaacattGTTCGTTAGCTAAACCATTC
ACAAAATATACATACAGGCCAATCAATTTATGCAATTGAGTAATCAGTAA
TAATTATTATAATGATACATTATTAttgatttcaaagattttatttagat
tttgattaatttctAGGATCAGATATAATATAGAGCTgagccaaaaatat
ttttaaaatttttctaggGAATACTTGCTCTCCTTGGTGGTATTGGATTC
ATGCTTGGGCTAGCATTCACACCAAATGAATCAAAGAACCAAATGACCCG
TTTAGGTATCTATGATTATTTGAAACTCAAATCTTTTTAGATGCATGATT
CATTTTCCACTCAAAATATTTCAGCTAATACAGATCATTTTATGGAattt
cacgtttttttaaaCGCTTCTGCTCAACTTTTTCTGTTAATCTAAGAAAC
TAATAAAGAATAATTTAtaagttcatttttcaaatgtaaaaaagaaattt
accaAAGGAATAGGAGAGATTAGTTTAGCTGATCTCCATATAGAGTAAAA
ATTGGTTGAAGAATGGCCATTCTCACTATCAATATGTAAAGTTTGATATT
CTTGCTCTAATGAAAATTTCCTCGTCAAGTTTAACGAATATATCGTCAAT
TTCAAACTGCCCCAAACTGGTTAAAAACTAAGGTCATGCAACGTATTGAA
AGTAGAAGAAATGcagtataacttttttttttcattacagGATGTTTGTT
AGGTTTTGCAGGCTGCACAGGTTAGTGGTGTCTTTACTTCATTGAAATTT
CACGGTTAGGTCAATATTAGATATTATCAAATGACTTCTCAGGAATGTTg
tgaattttgtgattttttgatctcacgaaagtttctgctcgtgaaAACTA
ACATGTCTAAAGTATTTCTTGTATGATTTTCCACTTGAAGATTCCCCTTA
AAATTGTCTTCAATCTTTGCTTGTTAGGTTTGTCAATGGGACCATTATTG
GATGCTGTAATCAGTATTAACCCCAGGTATGACATAATTCTATAATATTA
TcattattttacatttttaaaaatactttaaacTATAACGATCGCTTTTC
CAACCAAATAGTGGATGTCCGGTGTCagataagaataattttttacAACC
AGACAACCCCAACACCGGACTCATGGAAGTCCGAAGTCCGATGTGTTCGG
TGCACATTAATTTTTTCCGACGCATGTCCGGTGCCTAGAGCTCTTGACAT
TTAACACCGGAATTACCACGTTCGGTGTAGCGGAAGGATACTTTTTGACA
TCGGACTGTACGGTGTGCCGGTAGGGTCGTCAAATACACGATCATTTTTT
TCTAACAATACTAACTTtttcactatatatatatatttaaatATCTACAA
AGTGTTTTACAGTGTACCAGAGCGTACTTATGTTTTTTTCTCGTCTTTTT
CTACAAAGCATCGTAACTACAGCATTCTTTGCCACCTGTGTCATCTTCAT
TTGTTTCACCTTGAGTGCATTATGGGCTGAGGAAAGAACATATTTGTATC
TTGGTGGTAAGCTTTTAATTATTGCAATCATTTGTTTACTTCCGGGTACC
TAATAGCGGAGggcccccgctaattaatttttcgaacattttccacccag
gacagaATTGCACTCCGAGaccatcctcactggattttttaacctggAAA
CAATAAAGTTACTATCCCCTTGGAAGAACTTCCACCGAGGCTGTTAGCca
ggggtgttttaaagtcTCTTTGAGATACAGGATAAAAACGATCAACGCGC
ATGTTACTTGGACTTAAATTTATAAAATCATCGTTTTGATGAATAATTAT
CTTTTAGGCACCCTCCTTTCTGGAATGTCCACATTGTTCTTTCTTGGTTT
GATCAACATCTTTTTTGGTTTCCAACTCCTTTACCAGGTAACAGATCTAA
TCCTCGACTTTCATGTTTTGCCCTTTTGTGTTATTCAAGAAGAAAAGTCT
TTTCATCGAATGAACTGAAGAAATATTTTAGAGGATCATGTTATACATAT
ATGAAAGATATCCATTCGAACACCAGCCTTGATTTCGACTAAAACCTCAG
ATGGTTCAAGTACATGTCGATTTCAAGCTTTAAATGGTCAGCTTAAAAAG
GAACATTTCAAAGTTCAACATGAAAATCCGAAATAAGAACAGCTGAGAAC
ATTATTAAGTGGTTCTTTTNAGCACCTCACTAAAagccgggatttttcat
ctcgtttcttagtgagttccactttgacgattttcgaaaaatagaagcct
ttcaagtgttttgacgcaaattcgctactgcaggagcttcgaaagttaaa
agtgacgtcaaaaaagacgttagagcccgaaaacccgggctccaaacatt
cgaaaaagtggcaaagtggaatagacggcaattgcgtaaaaaaaacgCGG
ATGACGCCTAGTATAGGCTATAATCCCctcggctattaggtacccgagag
taggtagACTTTTCAATTTGTTAAGTATTTTTGAATTAATAATTTGTCAT
CATTTTCGTAGGGGCCTAGCTCGGGCTTgtgattttgactttgtttttat
ctcaaTTTAAAATTCAgtggaaaaaattgcactccgaaACCATCCGCACT
GGATTTTTTGACCTGGAAACAATAAAGTTTCTATCCCCTTGGAACAATAT
CCACCGAGGCTGTTAGACATGGGTGTTTTAAAGTCTCTTTTGAGATACAC
GATAAAAACGAACAAGGCACATGTTACTTAATGTAAAATCATCGTTTTga
tgaataattattttttaggCACCCTCCTTTCTGGAATGTCCACATTGTTC
TTTCTTGGTTTGATCAACATCTTTTTCGGTTTCCAACTCCTTTATCAGGT
AACAGATCCTATCCTCGATTTTCATGTTTTGCTCTTTTGTgttattcaag
aaaaaatgtcttttcatcgAATGAATTGAAGAGGTACTTTAGAGGATCGT
GTTTAATTTGTAATACATATATGAAAGATATTAATTGAAACACCAGGCTT
GATTTGGACTAAAACCTATGAATGAATTAAGACTAATGTGAGGCTCAGGT
GTCGATTTCAAGCTTTAAATGATCAGCTTAAAAAGGAACATTTCAAAGTT
CAACATGTAAATCCAAAATAAGGACAGCTGAGAACAGTgactggttctta
taaataaaaccttattttaaaGCAATACACCTATTAAATTCTTAATCGTG
AGAAGGCTGGGTTGGAGTTTACCCAGAAGAATCAACGTTGAAACCATGTT
CGGTTTCGTCAGGTTTCgtaaaccggttttttgacgtttccaattttgac
gttcactCAGTGTTTCgaaaccgtttcgtttcggagcgaagcATGGAACT
TAGCGTTAGAACTTGGTCTGAAACATCTGTATCTTTAAGGAAATCCATGC
AAAGACTTCGGGCATTTGACGTCATCTCTTCATGGTAAACTCTAACCAAG
TTTTCTCACGCAGAAAGGGTTAATAAATATATAGCCTAAGGCTGAAACTC
TAAACGTGTGACCTGTATTTAACtcgatattttttattcatgatatgcac
caatagctgattggttgtaagtgacgtaaaatcagtcaatacgtcacatt
caaccaatcagctgttgggtccgttgaagacattacaatggtaCATATCA
TGACTATGGCATTTTTATCACGTTTAGGTTCATTTGTACGGTGGCTTGTT
ATTATTCTGTGGCTTTATCTTGTACGATACACAACTCATCATCGCCAAAC
ACAAAAATGGAGACAATGATTTCTTATGGTAAGTAATAAGTTTTTTGTTT
CTGTTCTTGTTCCTGTCTTACTGAATAaataaaaagagatttttttcggT
TTTAAACGTCCCAATGGGAATAGTTAAGTAGCACATTTTTTAATTGTCTT
CTTCTGATTTTCTCTATACATttctccgggggggggggggggcccggggT
TTGggagttttaaaaattttttgtccctggggggggtgattttttttttt
ttttggttttttcttttcttttccccgggggggggggtctctctaggttt
gcgagatttcaaaaatttatgatcCTTGAGGgagttcatttttgattttc
gtagtTTTGGAACCCTTGTAGAGACTCAATTGGTTTTTGTACACCTTTGA
AGGACTTTCGAGTGTGTGAAAAAGGGATCCTAATGGTTGgtacatacccg
gcacccattttgctaTGTATCCTCCCCCGGGACATTATTCTATAAACCCT
TTGACATTTCTTTCCTCCGGTGTGTTAATTTTAAGTTTATATCTAAATTT
AATCTTGACAATTGTTCTGTTAattctttcttcatttttaggCATTCAGT
CGATTTGTTTTTGGATTTCATCAATATCTTCCGAAGAATTATGATCATTC
TTGCAAACAAAGTAAGGGTTTCATTATcaacatttcaaatttctctttca
atttctttgaaCATTTGTTGCAACTTTTACATAAAAAGAATGGGCGAAAT
TAATATTATTTTTATGTGGGGTGAAGGAtgtattggatattttgtccggg
ggctACCccctgaaaaatctgcaaagtTTGCCTTGCTTTTGGGACAAATT
TGCTCTGTTTatgggtaattttgaatgtcctgGGGTTAACTGATGCtttt
ccgggggtaaatttccaaaagacaTCTACGTGACATTGAAAATCTTAAAA
CCCCTGGAAATGAACCATTCTACTTTGCAGTATTGAACCATTGAACACGA
TAATGTCtcttgaaaactttgaaagcttcttgaaaatcttgaaaagcaTG
ATCATCATAGCATGCGTTTGTCTTGTTTTTTGTTCAGATTATTACAGCAT
TTGAGACTTTGTTTTACCTTACACAAACCTTTGAAACAGAGAGCAAATGG
AGAGTTTGATTTAAAGAAGCATCGAAACTATCCAAATGCCGCGACAAAAT
AAGTTGAACCATCTGAAACTACCTGTACCATCATCCCTTCCGATAGTACT
ATCAGAGACTCTGGCTTCATAGATAAAATAATTAATTGCAGTCGTTATCA
TAATATTTAAAGATCATTTTCTGtgctttttttcaggaaaacaAGAAGAG
TAAGAAGAAGAACTGAATTCAATAAGAGATACTTGATGCAATGTTATCGC
AAATTTATTCCTCAATTCTTGGGTTTTAATATGGAAATCAGACTGTACTT
TCTTTTTTTGTAGCATCAAAAGTTTATACTTTGAAGTAATGCAAGNAATG
TTATCGCAAATTTATTCCTCAATTTTAATATGGAAATCAGACTGTACTTT
CTTTTTTTGTAGCATCAAAAGTTTATACTTGGAAGTAATGCAAGCATAAT
GTACTGTAAAATAAATCATCGTGATCTTTATTCGAGTAAATAAATATACC
ATTCTGTTGAAATTCTATTCtttgcattttgttttgaaattt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034627XLOC_034627Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054942-exon-scaffold_247-1491911889:81999..82203TCONS_00054942-exon-scaffold_247-1491911889:81999..82203Clytia hemisphaericaexon
TCONS_00054942-exon-scaffold_247-1510915933:81999..82203TCONS_00054942-exon-scaffold_247-1510915933:81999..82203Clytia hemisphaericaexon
TCONS_00054942-exon-scaffold_247-1575043694:81999..82203TCONS_00054942-exon-scaffold_247-1575043694:81999..82203Clytia hemisphaericaexon
TCONS_00054942-exon-scaffold_247-1491911889:87079..87187TCONS_00054942-exon-scaffold_247-1491911889:87079..87187Clytia hemisphaericaexon
TCONS_00054942-exon-scaffold_247-1510915933:87079..87187TCONS_00054942-exon-scaffold_247-1510915933:87079..87187Clytia hemisphaericaexon
TCONS_00054942-exon-scaffold_247-1575043694:87079..87187TCONS_00054942-exon-scaffold_247-1575043694:87079..87187Clytia hemisphaericaexon
TCONS_00054942-exon-scaffold_247-1491911889:87666..87753TCONS_00054942-exon-scaffold_247-1491911889:87666..87753Clytia hemisphaericaexon
TCONS_00054942-exon-scaffold_247-1510915933:87666..87753TCONS_00054942-exon-scaffold_247-1510915933:87666..87753Clytia hemisphaericaexon
TCONS_00054942-exon-scaffold_247-1575043694:87666..87753TCONS_00054942-exon-scaffold_247-1575043694:87666..87753Clytia hemisphaericaexon
TCONS_00054942-exon-scaffold_247-1491911889:88189..88218TCONS_00054942-exon-scaffold_247-1491911889:88189..88218Clytia hemisphaericaexon
TCONS_00054942-exon-scaffold_247-1510915933:88189..88218TCONS_00054942-exon-scaffold_247-1510915933:88189..88218Clytia hemisphaericaexon
TCONS_00054942-exon-scaffold_247-1575043694:88189..88218TCONS_00054942-exon-scaffold_247-1575043694:88189..88218Clytia hemisphaericaexon
TCONS_00054942-exon-scaffold_247-1491911889:88426..88474TCONS_00054942-exon-scaffold_247-1491911889:88426..88474Clytia hemisphaericaexon
TCONS_00054942-exon-scaffold_247-1510915933:88426..88474TCONS_00054942-exon-scaffold_247-1510915933:88426..88474Clytia hemisphaericaexon
TCONS_00054942-exon-scaffold_247-1575043694:88426..88474TCONS_00054942-exon-scaffold_247-1575043694:88426..88474Clytia hemisphaericaexon
TCONS_00054942-exon-scaffold_247-1491911889:88907..89004TCONS_00054942-exon-scaffold_247-1491911889:88907..89004Clytia hemisphaericaexon
TCONS_00054942-exon-scaffold_247-1510915933:88907..89004TCONS_00054942-exon-scaffold_247-1510915933:88907..89004Clytia hemisphaericaexon
TCONS_00054942-exon-scaffold_247-1575043694:88907..89004TCONS_00054942-exon-scaffold_247-1575043694:88907..89004Clytia hemisphaericaexon
TCONS_00054942-exon-scaffold_247-1491911889:89306..89324TCONS_00054942-exon-scaffold_247-1491911889:89306..89324Clytia hemisphaericaexon
TCONS_00054942-exon-scaffold_247-1510915933:89306..89324TCONS_00054942-exon-scaffold_247-1510915933:89306..89324Clytia hemisphaericaexon
TCONS_00054942-exon-scaffold_247-1575043694:89306..89324TCONS_00054942-exon-scaffold_247-1575043694:89306..89324Clytia hemisphaericaexon
TCONS_00054942-exon-scaffold_247-1491911889:90286..90346TCONS_00054942-exon-scaffold_247-1491911889:90286..90346Clytia hemisphaericaexon
TCONS_00054942-exon-scaffold_247-1510915933:90286..90346TCONS_00054942-exon-scaffold_247-1510915933:90286..90346Clytia hemisphaericaexon
TCONS_00054942-exon-scaffold_247-1575043694:90286..90346TCONS_00054942-exon-scaffold_247-1575043694:90286..90346Clytia hemisphaericaexon
TCONS_00054942-exon-scaffold_247-1491911889:91176..91276TCONS_00054942-exon-scaffold_247-1491911889:91176..91276Clytia hemisphaericaexon
TCONS_00054942-exon-scaffold_247-1510915933:91176..91276TCONS_00054942-exon-scaffold_247-1510915933:91176..91276Clytia hemisphaericaexon
TCONS_00054942-exon-scaffold_247-1575043694:91176..91276TCONS_00054942-exon-scaffold_247-1575043694:91176..91276Clytia hemisphaericaexon
TCONS_00054942-exon-scaffold_247-1491911889:91840..91909TCONS_00054942-exon-scaffold_247-1491911889:91840..91909Clytia hemisphaericaexon
TCONS_00054942-exon-scaffold_247-1510915933:91840..91909TCONS_00054942-exon-scaffold_247-1510915933:91840..91909Clytia hemisphaericaexon
TCONS_00054942-exon-scaffold_247-1575043694:91840..91909TCONS_00054942-exon-scaffold_247-1575043694:91840..91909Clytia hemisphaericaexon
TCONS_00054942-exon-scaffold_247-1491911889:92585..92940TCONS_00054942-exon-scaffold_247-1491911889:92585..92940Clytia hemisphaericaexon
TCONS_00054942-exon-scaffold_247-1510915933:92585..92940TCONS_00054942-exon-scaffold_247-1510915933:92585..92940Clytia hemisphaericaexon
TCONS_00054942-exon-scaffold_247-1575043694:92585..92940TCONS_00054942-exon-scaffold_247-1575043694:92585..92940Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_247supercontigscaffold_247:81999..92940 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.96999	12.4878	0.317417	29.0652	0.011986	0.00493463	0.0286095	12.6868	1.03844	0.0391857	0.0464394	0.0196637	1.25357	0.00211404	1.39381	1.13184	0.0115578	3.3583	0.0311736	0.0189963	1.5487	7.49212	6.90913	1.17997	0.0147363	12.5497	11.4498	11.606	2.3642	0.631624
Blast
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BLAST of TCONS_00054942 vs. Swiss-Prot (Human)
Match: BI1 (Bax inhibitor 1 OS=Homo sapiens GN=TMBIM6 PE=1 SV=2)

HSP 1 Score: 166.392 bits (420), Expect = 4.005e-48
Identity = 105/222 (47.30%), Postives = 149/222 (67.12%), Query Frame = 3 
Query:  162 ERSISLSALTDFSKLDVSTKKHLKNVYGALSLSMLSASVGAGLHLYSXXXXXXXXXXXXXXXXXX-XXXTPNESKNQMTRLGCLLGFAGCTGLSMGPLLDAVISINPSIVTTAFFATCVIFICFTLSALWAEERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYQVHLYGGLLLFCGFILYDTQLIIAKHKNGDNDFLWHSVDLFLDFINIFRRIMIILA 824
            +R I+  AL  FS +  ST++HLK VY + +L M  A+ GA +H+ +      L    G   ++  L  TP+  + +  RLG L GFA  TG+ +GP L+  I++NPSI+ TAF  T +IF CFTLSAL+A  R+YL+LGG L+S +S L    L N+FFG   L+Q +LY GL++ CGF+L+DTQLII K ++GD D++WH +DLFLDFI +FR++M+ILA
Sbjct:    5 DRKINFDALLKFSHITPSTQQHLKKVYASFALCMFVAAAGAYVHMVTHFIQAGLLSALGSLILMIWLMATPHSHETEQKRLGLLAGFAFLTGVGLGPALEFCIAVNPSILPTAFMGTAMIFTCFTLSALYARRRSYLFLGGILMSALSLLLLSSLGNVFFGSIWLFQANLYVGLVVMCGFVLFDTQLIIEKAEHGDQDYIWHCIDLFLDFITVFRKLMMILA 226
The following BLAST results are available for this feature:
BLAST of TCONS_00054942 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
BI14.005e-4847.30Bax inhibitor 1 OS=Homo sapiens GN=TMBIM6 PE=1 SV=... [more]
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