TCONS_00054945 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054945
Unique NameTCONS_00054945
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2927

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054945 ID=TCONS_00054945|Name=TCONS_00054945|organism=Clytia hemisphaerica|type=transcript|length=2927bp
aaaacattttatgatATACGTTATCAATAATTTCATCTGTATTTAAAATC
GCCTTTCGTATAACCATGCAATAGTACAAAATCTGATACATACTGGTTAA
ACCCGACATCAAGACATGAGGCAAGTGCAATGAGTagtaaaaatagcaaa
aacaatAATACAACAAacgagaaaaatgaagaaaaagcaGAAGACTCGCC
TTACGAAAGTATGGTGCGATCGCTCACCAACCGTGGTAAAAACAAGCGTA
AAGTGAAGTTGGTTGAAGACAAGTTGATCCAATTGACGTTTGCCGATCAC
AGTGATAGTGAGGACGATGAGGACTTCACATTGGATGATGCCGATCTAGA
TAGCGACGACTCCAATTTTGGTGAAGGTGACGACGGTGATTCAGACGGAG
ACGAAGAAGAAGAGAATGAAGACGGAGCGGAAGAGGAGGAGAACGAAACT
TCACAAGATGAAGAGCAGAAAGACGAACAAGCGAACAAACCCCTACATAT
TGGAGAATTGATCAAAGCCATGAAAGCAAATGACCAGGAAGAAGCTGATT
CCACAATCCTTTctgatgatgaaaatgaaagcatCCTCAATGAATCTAAA
GGAAACGGTGTCTCGAACGTATCAATATCGTCTAAAAAGGTATTCCTTGT
TTGCGGTATTTGCTTAGAAGCAGATTCTAATGAATCTGATGAAATTTTGG
AATGTGATAATTGTGGGATTACCGTTCACGAAGGTTGCTATGGAGATATA
GATACACCGGATGATAATGCCAGTGAATCTGATGCACCAACCGAACCATG
GTTTTGTGAGCCCTGTAAAGCCGGCTTAACCGAGGCTCCCATTTGTGAAT
TATGCCCTAACGTGGGTGGTATATTTAAATTGACTGATACTCGAAAATGG
GTTCATTTGATTTGTGCTCTGTACACACCTTATGTTGGGTTCCGTGATAT
TTCGAAATTGCAGACTGTCGTTTTGGAAGATATTCGATCGTCGATGTGGG
GTGCACACGAATGTATGTTTTGTTTAGATGATAATTTCTCGCGTACTGGA
GTTTGTATAAGTTGCGATGCTGGGCTATGTAAATCAGCTTTCCATGTCAC
GTGTGGACAACGAAACGGGTTTCTTTCCGATATTCCCGATAAAGCGGAAA
CGGATGATAACAGTCCCGATCTATTGTACGCTCATTGTAAACTCCATTCG
GTCAAACAAGAAGTAGAAACACGTAAAAGTAGTTGGCTGACTTTTCAAAG
CCACGTTGAGAAATTTCAACCTTGTCAAGATGACGACGAAAAAGATCGGA
TCGACGATTCTCTGAAGCGGGCTAAAAAGGATTTTATGGAATATCAGAGA
AACATTATCCAGCCAAAACAGCCGGACAAGGAGTACGCCCGCTTTCTTTC
GACCTGTCCGGAAGCTTGTAAATTACTGGCTAAGAAAGCTGATATTCTTG
GTTTGTTGAAGCACCCTGGCTATAACGTTGCGGCAGCTGTCACTAAAGGG
AAAATCACGAAACATGAGCCCAATCTATCCTCTGAGTTTGTCAATTATTT
CTTCAAACGGGAAATGGAATCCACAGAGATCACGCAGTCTTTAAAGACAG
CTGAACCTCGTCTTAACAAATTACGTAAAGAACAACGTGTGCTTACGAAG
AAAAGTGAAGAATACCACGGCCAGCTTGAGCAAGTGCGCAAAGACAATGA
AACGTTAATCAAATCGTGTGAAAACATTTTCGCTATTCTCTACAAACTGT
CAAATAAGAAATTCAATCTACCGGAAATGTTAAGACCGAACCGCGTTAAA
GAAACAAAGGGGAAATTGGACGAGACCACAAAACTCCTCAACACTGTAGT
CAATCGTTGCGCAACGTGTCAATTGACCACTGATCAGCATTTGCTTGCAC
TATGTGATACCTGCAAACAACATTACCATTTAGCCTGTCTCGATCCACCT
CTACTGCGCATGCCAAAGAAGAGTGGGAACTACTTGTGGCAGTGTACTGA
ATGTGACTCCTCTGATGAATCGGAAAGCGAAGTCGAAATTTTGGACGATA
TTAACGACGGAATGCGTCGAAATAAACGGCGGAATACTCGACAACCGACT
AAGTTTACACCGGAAGAACCTAAGAAGGATTTCCCTCTAAAACGGAAAAA
CGAGGACGAATCGGGATCAACTAAAcctaagaaactgaaaaagaaagtaa
agaaaCCTAAAGAGAACTCGGAAAAGAAAAAGGAATCCAAAACACCGCCC
GTTAAAAAAGAACGCCTTCCGCCAGTCAAAAAGGAGAAACCACCCTTGTT
GCCTTTAGGAGACTGTTGTATATGTAACAAGCCTGGAGATCGAACAAATA
TAGTCAAATGTGACGAatgcttgaaattttatcaTTTCCAAACGTGCCTT
GATCCCCCTTATTCGAAAACGCCTAAATCGAAATTTTACGGTTGGATTTG
CGAAGAGTGTGACGAAACAGATGAGGATTACGTCGAAGATGAGGAAAACG
AAAGCGGAAAGGAAGTAAACGGAACGGAACATGTGGAAAAGGACGATAAA
ACGgaagaaaaaatggaaattgTTGTCGTCGATGACAACGAATAAGATTG
TTTAATTATCAAATACTTATTCGTATGAAAAATCTCGCAAATTCTCATTT
TATTATACTAtattatagaaatttttgtcGAGCTTTTAAAATGATAATTA
CCTTTTTTTTCGCTCCCTTTTTGTTTGCATGTACTGAATTATCCAAACCT
TGAAGGTACCAAAagctttatttcaaaatttcatcgtATTTTGGCTGAGG
TTAAAGTATTCTCAAGCATTGGACGAAATTGAGGTTGAAATGGTCATTTA
TCTTAACtacttttagttttaaatttTGTACCTGCGCATAAAAAGTAGCT
TCCAATTTTAAACATACGGGAACTAAT
Run BLAST on NCBI

protein sequence of TCONS_00054945-protein

>TCONS_00054945-protein ID=TCONS_00054945-protein|Name=TCONS_00054945-protein|organism=Clytia hemisphaerica|type=polypeptide|length=821bp
MSSKNSKNNNTTNEKNEEKAEDSPYESMVRSLTNRGKNKRKVKLVEDKLI
QLTFADHSDSEDDEDFTLDDADLDSDDSNFGEGDDGDSDGDEEEENEDGA
EEEENETSQDEEQKDEQANKPLHIGELIKAMKANDQEEADSTILSDDENE
SILNESKGNGVSNVSISSKKVFLVCGICLEADSNESDEILECDNCGITVH
EGCYGDIDTPDDNASESDAPTEPWFCEPCKAGLTEAPICELCPNVGGIFK
LTDTRKWVHLICALYTPYVGFRDISKLQTVVLEDIRSSMWGAHECMFCLD
DNFSRTGVCISCDAGLCKSAFHVTCGQRNGFLSDIPDKAETDDNSPDLLY
AHCKLHSVKQEVETRKSSWLTFQSHVEKFQPCQDDDEKDRIDDSLKRAKK
DFMEYQRNIIQPKQPDKEYARFLSTCPEACKLLAKKADILGLLKHPGYNV
AAAVTKGKITKHEPNLSSEFVNYFFKREMESTEITQSLKTAEPRLNKLRK
EQRVLTKKSEEYHGQLEQVRKDNETLIKSCENIFAILYKLSNKKFNLPEM
LRPNRVKETKGKLDETTKLLNTVVNRCATCQLTTDQHLLALCDTCKQHYH
LACLDPPLLRMPKKSGNYLWQCTECDSSDESESEVEILDDINDGMRRNKR
RNTRQPTKFTPEEPKKDFPLKRKNEDESGSTKPKKLKKKVKKPKENSEKK
KESKTPPVKKERLPPVKKEKPPLLPLGDCCICNKPGDRTNIVKCDECLKF
YHFQTCLDPPYSKTPKSKFYGWICEECDETDEDYVEDEENESGKEVNGTE
HVEKDDKTEEKMEIVVVDDNE
Run BLAST on NCBI

transcript from alignment at scaffold_247:97402..115649+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054945 ID=TCONS_00054945|Name=TCONS_00054945|organism=Clytia hemisphaerica|type=transcript|length=18248bp|location=Sequence derived from alignment at scaffold_247:97402..115649+ (Clytia hemisphaerica)
aaaacattttatgatATACGTTATCAATAATTTCATCTGTATTTAAAATC
GCCTTTCGTATAACCATGCAATAGTACAAAATCTGATACATACTGGTTAA
ACCCGACATCAAGACATGAGGCAAGTGCAGTAAGTAGTTTTTGTGCTCTT
TCAGTCTTTTGATCTCTTTTGGTGTTTGCAATTGGTGCTTTCTATCTCCT
CAAACATGCTCATGTTTGAGAGATAGAAGCACCACACTCTGATGTTTATC
ATCAATAGAACATGTGCATTCTTTATTCTACTTTTCACGACCTTtttaga
atagaccttttttcaaagaggacgtcctgttgaataaggccgatgaaatt
tacatatgagtttaccgtcgtgaacttacccaaaaatagatgcggcatga
tttcattattcattattcattattttcccaacagcaccttatccaccatt
tctgccaatcatgctctcttaaaataaaaaattttgctttgcttcaaccc
ttcgcatcttttgcgaacgaaaaataaagatcgattgctacTGTGGCGCT
AGATTTTGCAAAAAACTAAAATGGCGGTCAGGGCGGTTTGGCAGATATAT
GGGCGGGACGCCCACTGCagttgtaggattgagggcggcagcattttctg
taataaatcttctttgtttacccATGTAAACATGCGTAGAGACAATTTTA
ACAAAGATAGAGGTTGTAGTTGTATAGAAAtatggaaataatgaaaaatt
tatgaattttgaaaataatgaaattttcatgcgggtgctttttagagatg
cgggcggccgacggtaaactcaaatataaatttcatcggccttaGAGCCA
CTCTCAATAAATTTTTAGTTCGCGTcctgctttgtttacatttttcagtt
CGGAGCACTATGTANgccataaaaacaatgatagagccatgcataattac
tgtatcatgcatattgtaataattatgcatggttttatcattgtttttct
gctggactacatatttattcaacagggtggcctctttgaaaaaaggtcta
taaaagatcgtaaaaattttacttttccagttttttgattgaatgaactC
TCATTGACATAAATAATCCTTTTTTCAGATTGGTTTAACcctgacagtta
catcaatatgccttcttacctgtcttttttaaaaatataaataaaagtaa
tcacggaaaaaaacgcgaaaaaaaaagacataagtataagtgtgagaaca
gagtaatcaaactcgttagaaaaagtaccattagaagtcataaaaaatca
acctgaataaatgcaatcgaaattccagagaacttcataattccccaaac
aacattacattactatgtcaaactcccatcacataaattttacaattaca
gttaggaacatttggcgagttcctgtacgcgacgcgatctaaaaaatcat
aacaacactcattaaaaaatgacatttgtgtcttttcgcactttttttag
cctagatgatgtagcaaacatagtaaatataagcacactgtgcctttaat
tggctgaagTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNAGGCGTACAAactgtacaaactttcgcgagca
gaaacttttgcgaggtaaaaaaatcgcgaaatttgcgacattactttcgc
gaatttaagaAAACAATGTTTTCCGTGAGCGTAAACTTTAGCGAATTGTT
AGGTAAAAATGAGAATAAAGTAGTAAGACCTTCAAGGAAGATTTTGACCA
TATTTCAAAGAATGTGACTGTTTTGCCATTTTGTCTTTAGAAAAATGCCT
ATGCAGTCCTCCCAATATTATTTTGGTAATGTTTTTTACTACCTGGTATT
GCCACAGTAGTAGTGTCCAACATCGGGTCCAACATACGTatcatctttgt
ttttattaagaGGAGAGAAAAGGTTTGTCGTGTTTTTCAGGGGGAAAACT
AAACTTTGGAAGTTTAGAAACCGAATGTTAGTAAATGTTCTGTGCTCTAC
CTGCATGCTACGGCCGTCTATTTTCGAAACCTCTTTCGAGATCAAATACC
TCCTTGAATTTGTCTCGTAAGCGAACCTACCTGTATCAAGGTGTCTCCAT
CCAGCTCGAGTCACATATTCATTTTGATCATCAATATCTTCATCTACAAG
TTGACATTTGCTTTTCTCCAAGTCTGTTTCATCCTTATAGAAATTCACTG
ATTTACATTCTTTCTCTGTAACACAACGATCCACGCAGGCCGCTTCTTCC
TGCGTGTAGAACTCTTTATAGTGTGATGTAACATGGACTTTATCTGTATG
TCTCAATATGAATTTGGCTAAACGAGTGTCTTCGAGCCTTAGAATGTTGT
GAGCAGAGATTATATCGAGATAGCGGCTCAAGCCCTGATTTAGCAGCCCA
AGCCCTGATTTAGCGGCCCAAGACCTAAATAAAATTGACGAAATTGCGAA
ATTGGGTTACGGTTATAGAGGGAATTAAATCCACATTAAACGTGTTTTTA
CCACGCCCTCCAAGAAAGAAAACGTAGACAGAGAATCGATATACTAAAAA
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NNNNNNNNNNNNNNNNNNNNNNNNNNNCTCTTAGGAGAAAGTATTAAGCT
TCAGTAGAGCATTCCCTTTTTTAGCAGATACCATataaataattcaattt
tacgATAACAAACAGTAGATATATTAAAAGTCACCCCAAAAAGGAAACAC
CCTTACCCCAAAAACAGCCATTCTCTGGTTGATAATAATAACCTCAGCCA
TTCGCTGGTTGATTATAATGCCAGTATACATTGGCAACGTCTCTTAAAAT
TCGGGACTGGAGGAGCATACCTAAGCtatgtttttaaatttagcTTATTG
AGATAAAGTCTTCAATGCACCAGGCCTGGGTATGTGTAAAGATATCACTC
TGACctacagtgtagctggaacctcgatattccaggattagaaaaagcta
tacctgttatcttttttctttaaagaatcaacaagccatcaacatcgata
aattacaaacATTtattcctcagaaacttttaaaattatctgccattatg
actttcttgaagccgttccgaaattaaccaatcgggttaggtatcggaat
tcctatgggagttcttttccgagatttgtaaaatagctaagtcggcaaaa
aaacttttcccaggggtttgaggaataaacagaactgttatcgtttgtgt
tttatttaaccatatatttaaatttgcgctcaaaaatacttaaatgaaCA
AGTTAATAACATATACTATTTGTATTTCTCAggaaataaacacttacaga
acgacatagttgatcatttgaaatacccccgtgtttgggccattctatcg
tgggcgccaaatagggcggaaactaagtagcaccctcagtgcaagattgc
cacctcatctttattcgcccgcgcgaaaacgcgagctaatcatttttttc
tcgcgcgctcaagcagttacatcaatatgccttcttacctgtctttaaaa
atataaataaaagtaatcacgaaaaaggacgcgaaaaaaaaagacataaa
tgtgagaacagagtaatcaaactcgttagaaaaagtaccattagaagtca
taaaaaatcaacctgaataaatgcaatcggaaTTCCAGAGANggaaaata
gtaagaaacttaattttacaagtggcatttagtttttgctggcttataga
atggcaggatcctggatggtttccctaactgaattacgtcagagtagact
acgctcgccaccgaagagttttatttggaaagggtaattatattttattg
ttcgcttcttttttaaagattcgccgggttggaaaagtatgaatttcttt
gtacatattttacctaccccaaatatttaggaggctgagttttaaacaaa
tcgtcaagttgaaacaaacgataaatgtatcaaggtctgNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNccctggtgacttaaca
aaagagacttaactcgatgttacaatccaattattgaaagtttgtctctg
cctttttataatgagcaagacatacgttctctgattactcaattttcata
ttgacattttcgaggcattttgatgtaactgcctgaAATACTTCAGTTTC
TCAAAATTGAATAAAAGGATAAATAGGTTCTCTCctaaattttgcttttt
ttgaggaccctgccgacgcaccggactgtccggtgtatttgtccggtggc
aaaaaatatccttccgctacaccggacgcaataagtccggtgtcagtccg
gtgttgtatacagggaattttggacgccagacatttatgaaacaaaaatt
aagaaacaccggacggaCCCGACTGGTCATGTCCAATggtttgattgtcc
ggtggNTGccagacatttatgaaacaaaaaattaagaaacaccggacgga
CCCGACTGGTCCTGTCCAATggtttgattgtccggtggaaaaaatatcct
tcttctacaccggacatccgacttccttaagtctggtgtagagattgtcc
ggtggtaaaaaaaattcccatTTTACACCGGCCTTTCGCATGTctggtgt
tcgttaagtccggtgcgtggGCAGGGTCCTTTTTTTTGTTATTGAGTAAA
AAggttctatctatctatctatttaatTAAGTAGCATTAGGCGTGATCCC
ATATTCGTCACATTCTATCCTCTTATATAATATAGAACCATCATCANNNN
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NNNNNNNNNNNNNNNNATTACCTCCGCTCTCTGtgtaaggtttagataag
ctatgatagcatcacttaataagaacttttttaagtttttttttcttcaa
tctttttcttaccacaagcgattattcaaggctgagatatagaagaacgg
gtataggcgtttgcgcctgcgtttggtgactgacattttcagtttcagtt
tcactacttacactttcagccagcgagtgagcgagcatgataattgattt
ccaggtcaaaatgtttgacacttgatccaatcgtttgcttatctttcttg
cgtggttgtcaattgaatttcaatattcaatgcttataaaatacggttgt
tTATAAGGGTATCAAACTCATCACTAagagggaacagatcatagattcga
attgaacgcgtaattactaatagcaattaacattacataacgtgtcgata
tctcttcactcCCATGAAATGTGATTCNNNNNNNNNNNNNNNNNNNNATT
ACATAACGTgtcgatatctcttcactcCCATGAAATGTGATTCAAAATTA
AAGCGATGAGcacgaaaacaaaatcaagaattggaaaatttgacacccag
agggatcaaactcggaaacccatgcttatgagacagacgctctaaccatt
tgagctaaccacgcttgagAGAGTCTGAGAGTCTGAGCTTTCCCTCAGAC
TTtcccaagcgtggttagctcaagtggTTAGAGCATCTGTCTCATAAgca
tgggtttccgagttcgatccctctgggtgtcaaatttttcaattcttcaa
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NNNNNNNNNNNNNNNNNNNNNNNNNNNtcagccagcgagtgagcgagcat
gataattgatttccaggtcaaaatgtttgacacttgatccaatcgtttgc
ttatctttcttgcgtggtcgtcaattgaatttcaatattcaatgcttata
aaatacggttgttTATAAGGGTATCAAACTCATCACTAAGAAGAGAAaac
agatcatagattcgaattgaacgcgtaattactaatagcaattaacatta
cataacgTGTCGATATCTCTTTTAAATAAATGTTTTCTTAGTTTTACAAT
TGAGCATGACTTTTACTTAGCTTTCAATCTGGAACCTGGttatttttcag
ccatttttttcaaattaaaattgacaaaatcaaagaaaatgtcaaaaccC
TTTTATCCCAAGGTCGCGTTTTATCTATATCtttgactttgtttttttta
taatatgtaTGTCATGCCATGACATGATGGCGGCTGGTCCCCACTAAATC
CTGCCCTAGCAGAAAGACTTAGATTATTTCTCGAAGATTCTGTCCCAACC
TTGTTTCGGACCACCAAAGTAATGCAATCGCTGATTTGAAACCTGATACT
CTCCAACCACTAGGCTACCAAGCCGCTGAATAATCCTGCAAATTATTAAA
TGAATTTATAAATTTACATATATAGTATTATAAAGAAAAGGGTATACAGA
CCTCACGGTTAGGCTAACTATGATCGCAGTTCTCCCTTACTCACGAAAGC
CCGACAGTCAGCCAGTGCACTGTCTGCCCGCCGGGTGTGGAGGTTACCat
aggatcgtctaatatcgacatgcgtcttctaatttcgacaccggatctgt
aaaataatcaaaacaaaccttgaatgaaattcttggtatcattcttatcg
aacaagttcacccatcaaactagaagttcagtaaacattgcaatcctttc
aataaaaaaaacagccaaatgaTAAGCAGTTTCACaaaacacacgaaacg
catgcaaacttcctcgtaactttcttgtgtccatcattaaaattttataa
ctttattacgcttcaagtcacgtgataaaaataatttgcgcgcttagtcg
acctggtttctCTGTCCTTATTGTTTATGAAACTTCTaggcgccgcacct
agcacacccggtcccttttcaaattcataaggaaaccgggttcttttaat
tattttcggttcacggtaaaaaggtctactaaaaaNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcttcgttg
aaagcatgctaattagttttttagtgattactacatcgttaaagttttct
tttcaaatataagtaataacacttcacatttctcatattatattttaata
atctgtgacgtgatagggagagtacaatttagtgattgattgagaACTTT
GGTAtctatttgtttatgtttgattttttatttcgaagaccagcctattg
tctgtacacaaacccaatatctacggctaatttcaaaattcattaccgta
gagggtctgttgtcattgtcttttctggtttgagatttttcaaaccaacc
gctACGATGGAGTGCTATTGGAGTTTGGCAAGAAATCGGAGGCGATAAGA
CAAAATGGCCGTCAGAGTTGTCAGAAAGTATAGAAGTTTgtcgaaaaaaa
gtgttttcatcATAACCAGTAATAACAAAActgacttctttattttttaa
taattggaATAAAAGAGAGCTCTAattgaagacattctattgcaaaataa
ctctttttgcacaaatcgaatgttttttgtttacattttggatcTTTGAG
TTCACGAACATGAGAGAGAAGTTGTTTGNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGGTCTTTTGCTTTGAAG
CCATCATTGATGTTTGGTACTATAATTTCTGGAATTTTCCAAGTATATAT
GATCCTATATCTTTCTCTCCTTCTCTGAAGTGATTATATCTTGAGCTGCA
TGAGACTATTGCCTTATTTTACGCCCACAATAAAATGATCTAAATATAGG
GATGTGACAATGACCCATAAGCTATCTAATTTTCAATTAGCTGTAAAAGC
TACAGAAGAGCATTTAGTAACATGAAAGCCAGACAGTTTTGATTCCCACT
GAACATttatattctggttttcatgttactaAATGCTCTTCTGTAGCTTT
GTTATAGTTACTTACtataaacatcaatttttcatatCTACGAAGATTAA
TAACAACGCTGTCATCAATCAATATAAAAGATAATCCAAAAagttttgtc
tattttctgatCAAGATAATAATGGGGAATTTTTTCggattaccttatta
cacgaatattactaggcaagcaTTCAacagccttgaaattaacacgcaaa
aaattaacacaaattttatttgcttattcaaggacaccacggctggtttt
aattaaggggatCTTTATTTACacgaaatatttcaatttgtgttaataaa
atgactagtaatatttgtATAATAAGGTATCTTTTATATTGTTTTACTTC
AAGTTGTCAGCTGGTCATGGTatttgacaatcaaacaaaagattttctga
aaaaggtcTTGTAAACAATTAAACATTTCACAGACAAGAGTATGAGACAT
TTAAAAAGAATGAAAGTTGTTGATTTGCTGAGACATGCTCAAACAAACTT
TAATATCAAGAAAGATGTCATTTCAAAGAATATTCCTATAAATTCTACTG
GTTTAAAACAATGCCAAGAAAGTGAAATTTCTAAACATTATGAAATGGTA
GTGTGTTCACCAATGCGCAGGTGCAAAGAAACGCTTGCCAACATTCAAGG
AATCACTTATAATCAGATAGTTCATTCCGATCTTTGTAGGGAACATCAAA
TTGCTAATTGTGACTTTCTGGAGCATGAAGATGAAAATATCCTTGAAAGT
GAAGAGGAATTACTTAATCGTGTAGAGAAGTTTCGACAATTTTTATTAAC
TTTGAAAGAGGATAAAATTCTTGTTGTTTCCCATGGTGATTTTTTGTGGA
ATTTGACAGCCAAAAAAGTTGATGATGAACGTTTTGGACAATGGCTTGAT
AATTGTCAACTCTATGAATTTGAGTTAGATTtggattgatttaaaaaatt
attcgaaaaaatctttctatttgaaatttttatgttACCTTGTCTTTGTA
AATCTTTGTGCTTCTGTTACCATATATCATTGCTTTTATCATTCAACTCA
Aattatattttgaagaaaaaactggatttattttagtagtgaaattttct
taaaaaatattaacaaaatgacggattttttataatatttttttacctAG
AGATAAataataatatatttttatgCAAGCAATCTATTCCAATTTATGTT
ACTGATGTATATATTGACATATTTTTGACCATATTTTACCTTTGCTGAAT
ATGTTGTGAAAGTATGTGTGCTTATGAGGGTAAATTAGAGCGAAGTATGG
TtcgaaagattttgtttatatATGAAAGCGCTTTGAGTGTGCACTCTCAT
TCATTTGCCACTGTGTGAAAACCATTGTCCGAGGAATTGCTGACGCTGAC
ACACTAAAAACGAACAATCTTAAATCAGCTGTTTCAATTTGTTTACTTTA
GATGAGTagtaaaaatagcaaaaacaatAATACAACAAacgagaaaaatg
aagaaaaagcaGAAGACTCGCCTTACGAAAGTATGGTGCGATCGCTCACC
AACCGTGGTAAAAACAAGCGTAAAGTGAAGTTGGTTGAAGACAAGTTGAT
CCAATTGACGTTTGCCGATCACAGTGATAGTGAGGACGATGAGGACTTCA
CATTGGATGATGCCGATCTAGATAGCGACGACTCCAATTTTGGTATGTTT
TTTAACCTTTATCTTTATAACTGCATGAGTGTATCTAGTAAGTTAGGTCC
AATAGTATTTCAGTGCAGTagctaattttttttagaaaggaTTTTTTCAT
AAAGTTTCTGTTACAGTGTTAGATTACAgatttttaattatattttcaaa
ataaaatttcacttTGAGTGCTTTCTCTTGAGCTTCTATTTTCAACCCCA
CGACTacggttggccctcgcggtgtcacttaAAGTCAGCCCTTGATACTA
AAATACTTCCTACTGAACTATTTATTATGTCAGtattatatttattttac
ttttttctttggaTCAATAATGAAACGCCACTCCACTTCAATGCATAAGA
TAAGACTTTGGACGATACacaaatttcaattaaaatttgTCTCCTCAGTT
TCACCTGGCGATTACTTTTTAGACGATTAAAAAGATTTGGAGGGCTGGCT
GACAGGGTGTGGTGTATTGTATTTCTTCATTATATTGACAGGTGAAGGTG
ACGACGGTGATTCAGACGGAGACGAAGAAGAAGAGAATGAAGACGGAGCG
GAAGAGGAGGAGAACGAAACTTCACAAGATGAAGAGCAGAAAGACGAACA
AGCGAACAAACCCCTACATATTGGAGAATTGATCAAAGCCATGAAAGCAA
ATGACCAGGAAGAAGCTGATTCCACAATCCTTTctgatgatgaaaatgaa
agcatCCTCAATGAATCTAAAGGAAACGGTGTCTCGAACGTATCAATATC
GTCTAAAAAGGTATTCCTTGTTTGCGGTATTTGCTTAGAAGCAGATTCTA
ATGAATCTGATGAAATTTTGGAATGTGATAATTGTGGGATTACCGTTCAC
GAAGGTTGCTATGGAGATATAGATACACCGGATGATAATGCCAGTGAATC
TGATGCACCAACCGAACCATGGTTTTGTGAGCCCTGTAAAGCCGGCTTAA
CCGAGGCTCCCATTTGTGAATTATGCCCTAACGTGGGTGGTATATTTAAA
TTGACTGATACTCGAAAATGGGTTCATTTGATTTGTGCTCTGTACACACC
TTATGTTGGGTTCCGTGATATTTCGAAATTGCAGACTGTCGTTTTGGAAG
ATATTCGATCGTCGATGTGGGGTGCACACGAATGTATGTTTTGTTTAGAT
GATAATTTCTCGCGTACTGGAGTTTGTATAAGTTGCGATGCTGGGCTATG
TAAATCAGCTTTCCATGTCACGTGTGGACAACGAAACGGGTTTCTTTCCG
ATATTCCCGATAAAGCGGAAACGGATGATAACAGTCCCGATCTATTGTAC
GCTCATTGTAAACTCCATTCGGTCAAACAAGAAGTAGAAACACGTAAAAG
TAGTTGGCTGACTTTTCAAAGCCACGTTGAGAAATTTCAACCTTGTCAAG
ATGACGACGAAAAAGATCGGATCGACGATTCTCTGAAGCGGGCTAAAAAG
GATTTTATGGAATATCAGAGAAACATTATCCAGCCAAAACAGCCGGACAA
GGAGTACGCCCGCTTTCTTTCGACCTGTCCGGAAGCTTGTAAATTACTGG
CTAAGAAAGCTGATATTCTTGGTTTGTTGAAGCACCCTGGCTATAACGTT
GCGGCAGCTGTCACTAAAGGGAAAATCACGAAACATGAGCCCAATCTATC
CTCTGAGTTTGTCAATTATTTCTTCAAACGGGAAATGGAATCCACAGAGA
TCACGCAGTCTTTAAAGACAGCTGAACCTCGTCTTAACAAATTACGTAAA
GAACAACGTGTGCTTACGAAGAAAAGTGAAGAATACCACGGCCAGCTTGA
GCAAGTGCGCAAAGACAATGAAACGTTAATCAAATCGTGTGAAAACATTT
TCGCTATTCTCTACAAACTGTCAAATAAGAAATTCAATCTACCGGAAATG
TTAAGACCGAACCGCGTTAAAGAAACAAAGGGGAAATTGGACGAGACCAC
AAAACTCCTCAACACTGTAGTCAATCGTTGCGCAACGTGTCAATTGACCA
CTGATCAGCATTTGCTTGCACTATGTGATACCTGCAAACAACATTACCAT
TTAGCCTGTCTCGATCCACCTCTACTGCGCATGCCAAAGAAGAGTGGGAA
CTACTTGTGGCAGTGTACTGAATGTGACTCCTCTGATGAATCGGAAAGCG
AAGTCGAAATTTTGGACGATATTAACGACGGAATGCGTCGAAATAAACGG
CGGAATACTCGACAACCGACTAAGTTTACACCGGAAGAACCTAAGAAGGA
TTTCCCTCTAAAACGGAAAAACGAGGACGAATCGGGATCAACTAAAccta
agaaactgaaaaagaaagtaaagaaaCCTAAAGAGAACTCGGAAAAGAAA
AAGGAATCCAAAACACCGCCCGTTAAAAAAGAACGCCTTCCGCCAGTCAA
AAAGGAGAAACCACCCTTGTTGCCTTTAGGAGACTGTTGTATATGTAACA
AGCCTGGAGATCGAACAAATATAGTCAAATGTGACGAatgcttgaaattt
tatcaTTTCCAAACGTGCCTTGATCCCCCTTATTCGAAAACGCCTAAATC
GAAATTTTACGGTTGGATTTGCGAAGAGTGTGACGAAACAGATGAGGATT
ACGTCGAAGATGAGGAAAACGAAAGCGGAAAGGAAGTAAACGGAACGGAA
CATGTGGAAAAGGACGATAAAACGgaagaaaaaatggaaattgTTGTCGT
CGATGACAACGAATAAGATTGTTTAATTATCAAATACTTATTCGTATGAA
AAATCTCGCAAATTCTCATTTTATTATACTAtattatagaaatttttgtc
GAGCTTTTAAAATGATAATTACCTTTTTTTTCGCTCCCTTTTTGTTTGCA
TGTACTGAATTATCCAAACCTTGAAGGTACCAAAagctttatttcaaaat
ttcatcgtATTTTGGCTGAGGTTAAAGTATTCTCAAGCATTGGACGAAAT
TGAGGTTGAAATGGTCATTTATCTTAACtacttttagttttaaatttTGT
ACCTGCGCATAAAAAGTAGCTTCCAATTTTAAACATACGGGAACTAAT

Coding sequence (CDS) from alignment at scaffold_247:97402..115649+

>TCONS_00054945 ID=TCONS_00054945|Name=TCONS_00054945|organism=Clytia hemisphaerica|type=CDS|length=4932bp|location=Sequence derived from alignment at scaffold_247:97402..115649+ (Clytia hemisphaerica)
ATGAGTagtaaaaatagcaaaaacaatAATACAACAAacgagaaaaatga
agaaaaagcaGAAGACTCGCCTTACGAAAGTATGGTGCGATCGCTCACCA
ACCGTGGTAAAAACAAGCGTAAAGTGAAGTTGGTTGAAGACAAGTTGATC
CAATTGACGTTTGCCGATCACAGTGATAGTGAGGACGATGAGGACTTCAC
ATTGGATGATGCCGATCTAGATAGCGACGACTCCAATTTTGGTGAAGGTG
ACGACGGTGATTCAGACGGAGACGAAGAAGAAGAGAATGAAGACGGAGCG
GAAGAGGAGGAGAACGAAACTTCACAAGATGAAGAGCAGAAAGACGAACA
AGCGAACAAACCCCTACATATTGGAGAATTGATCAAAGCCATGAAAGCAA
ATGACCAGGAAGAAGCTGATTCCACAATCCTTTctgatgatgaaaatgaa
agcatCCTCAATGAATCTAAAGGAAACGGTGTCTCGAACGTATCAATATC
GTCTAAAAAGGTATTCCTTGTTTGCGGTATTTGCTTAGAAGCAGATTCTA
ATGAATCTGATGAAATTTTGGAATGTGATAATTGTGGGATTACCGTTCAC
GAAGGTTGCTATGGAGATATAGATACACCGGATGATAATGCCAGTGAATC
TGATGCACCAACCGAACCATGGTTTTGTGAGCCCTGTAAAGCCGGCTTAA
CCGAGGCTCCCATTTGTGAATTATGCCCTAACGTGGGTGGTATATTTAAA
TTGACTGATACTCGAAAATGGGTTCATTTGATTTGTGCTCTGTACACACC
TTATGTTGGGTTCCGTGATATTTCGAAATTGCAGACTGTCGTTTTGGAAG
ATATTCGATCGTCGATGTGGGGTGCACACGAATGTATGTTTTGTTTAGAT
GATAATTTCTCGCGTACTGGAGTTTGTATAAGTTGCGATGCTGGGCTATG
TAAATCAGCTTTCCATGTCACGTGTGGACAACGAAACGGGTTTCTTTCCG
ATATTCCCGATAAAGCGGAAACGGATGATAACAGTCCCGATCTATTGTAC
GCTCATTGTAAACTCCATTCGGTCAAACAAGAAGTAGAAACACGTAAAAG
TAGTTGGCTGACTTTTCAAAGCCACGTTGAGAAATTTCAACCTTGTCAAG
ATGACGACGAAAAAGATCGGATCGACGATTCTCTGAAGCGGGCTAAAAAG
GATTTTATGGAATATCAGAGAAACATTATCCAGCCAAAACAGCCGGACAA
GGAGTACGCCCGCTTTCTTTCGACCTGTCCGGAAGCTTGTAAATTACTGG
CTAAGAAAGCTGATATTCTTGGTTTGTTGAAGCACCCTGGCTATAACGTT
GCGGCAGCTGTCACTAAAGGGAAAATCACGAAACATGAGCCCAATCTATC
CTCTGAGTTTGTCAATTATTTCTTCAAACGGGAAATGGAATCCACAGAGA
TCACGCAGTCTTTAAAGACAGCTGAACCTCGTCTTAACAAATTACGTAAA
GAACAACGTGTGCTTACGAAGAAAAGTGAAGAATACCACGGCCAGCTTGA
GCAAGTGCGCAAAGACAATGAAACGTTAATCAAATCGTGTGAAAACATTT
TCGCTATTCTCTACAAACTGTCAAATAAGAAATTCAATCTACCGGAAATG
TTAAGACCGAACCGCGTTAAAGAAACAAAGGGGAAATTGGACGAGACCAC
AAAACTCCTCAACACTGTAGTCAATCGTTGCGCAACGTGTCAATTGACCA
CTGATCAGCATTTGCTTGCACTATGTGATACCTGCAAACAACATTACCAT
TTAGCCTGTCTCGATCCACCTCTACTGCGCATGCCAAAGAAGAGTGGGAA
CTACTTGTGGCAGTGTACTGAATGTGACTCCTCTGATGAATCGGAAAGCG
AAGTCGAAATTTTGGACGATATTAACGACGGAATGCGTCGAAATAAACGG
CGGAATACTCGACAACCGACTAAGTTTACACCGGAAGAACCTAAGAAGGA
TTTCCCTCTAAAACGGAAAAACGAGGACGAATCGGGATCAACTAAAccta
agaaactgaaaaagaaagtaaagaaaCCTAAAGAGAACTCGGAAAAGAAA
AAGGAATCCAAAACACCGCCCGTTAAAAAAGAACGCCTTCCGCCAGTCAA
AAAGGAGAAACCACCCTTGTTGCCTTTAGGAGACTGTTGTATATGTAACA
AGCCTGGAGATCGAACAAATATAGTCAAATGTGACGAatgcttgaaattt
tatcaTTTCCAAACGTGCCTTGATCCCCCTTATTCGAAAACGCCTAAATC
GAAATTTTACGGTTGGATTTGCGAAGAGTGTGACGAAACAGATGAGGATT
ACGTCGAAGATGAGGAAAACGAAAGCGGAAAGGAAGTAAACGGAACGGAA
CATGTGGAAAAGGACGATAAAACGgaagaaaaaatggaaattgTTGTCGT
CGATGACAACGAATAAATGAGTagtaaaaatagcaaaaacaatAATACAA
CAAacgagaaaaatgaagaaaaagcaGAAGACTCGCCTTACGAAAGTATG
GTGCGATCGCTCACCAACCGTGGTAAAAACAAGCGTAAAGTGAAGTTGGT
TGAAGACAAGTTGATCCAATTGACGTTTGCCGATCACAGTGATAGTGAGG
ACGATGAGGACTTCACATTGGATGATGCCGATCTAGATAGCGACGACTCC
AATTTTGGTGAAGGTGACGACGGTGATTCAGACGGAGACGAAGAAGAAGA
GAATGAAGACGGAGCGGAAGAGGAGGAGAACGAAACTTCACAAGATGAAG
AGCAGAAAGACGAACAAGCGAACAAACCCCTACATATTGGAGAATTGATC
AAAGCCATGAAAGCAAATGACCAGGAAGAAGCTGATTCCACAATCCTTTc
tgatgatgaaaatgaaagcatCCTCAATGAATCTAAAGGAAACGGTGTCT
CGAACGTATCAATATCGTCTAAAAAGGTATTCCTTGTTTGCGGTATTTGC
TTAGAAGCAGATTCTAATGAATCTGATGAAATTTTGGAATGTGATAATTG
TGGGATTACCGTTCACGAAGGTTGCTATGGAGATATAGATACACCGGATG
ATAATGCCAGTGAATCTGATGCACCAACCGAACCATGGTTTTGTGAGCCC
TGTAAAGCCGGCTTAACCGAGGCTCCCATTTGTGAATTATGCCCTAACGT
GGGTGGTATATTTAAATTGACTGATACTCGAAAATGGGTTCATTTGATTT
GTGCTCTGTACACACCTTATGTTGGGTTCCGTGATATTTCGAAATTGCAG
ACTGTCGTTTTGGAAGATATTCGATCGTCGATGTGGGGTGCACACGAATG
TATGTTTTGTTTAGATGATAATTTCTCGCGTACTGGAGTTTGTATAAGTT
GCGATGCTGGGCTATGTAAATCAGCTTTCCATGTCACGTGTGGACAACGA
AACGGGTTTCTTTCCGATATTCCCGATAAAGCGGAAACGGATGATAACAG
TCCCGATCTATTGTACGCTCATTGTAAACTCCATTCGGTCAAACAAGAAG
TAGAAACACGTAAAAGTAGTTGGCTGACTTTTCAAAGCCACGTTGAGAAA
TTTCAACCTTGTCAAGATGACGACGAAAAAGATCGGATCGACGATTCTCT
GAAGCGGGCTAAAAAGGATTTTATGGAATATCAGAGAAACATTATCCAGC
CAAAACAGCCGGACAAGGAGTACGCCCGCTTTCTTTCGACCTGTCCGGAA
GCTTGTAAATTACTGGCTAAGAAAGCTGATATTCTTGGTTTGTTGAAGCA
CCCTGGCTATAACGTTGCGGCAGCTGTCACTAAAGGGAAAATCACGAAAC
ATGAGCCCAATCTATCCTCTGAGTTTGTCAATTATTTCTTCAAACGGGAA
ATGGAATCCACAGAGATCACGCAGTCTTTAAAGACAGCTGAACCTCGTCT
TAACAAATTACGTAAAGAACAACGTGTGCTTACGAAGAAAAGTGAAGAAT
ACCACGGCCAGCTTGAGCAAGTGCGCAAAGACAATGAAACGTTAATCAAA
TCGTGTGAAAACATTTTCGCTATTCTCTACAAACTGTCAAATAAGAAATT
CAATCTACCGGAAATGTTAAGACCGAACCGCGTTAAAGAAACAAAGGGGA
AATTGGACGAGACCACAAAACTCCTCAACACTGTAGTCAATCGTTGCGCA
ACGTGTCAATTGACCACTGATCAGCATTTGCTTGCACTATGTGATACCTG
CAAACAACATTACCATTTAGCCTGTCTCGATCCACCTCTACTGCGCATGC
CAAAGAAGAGTGGGAACTACTTGTGGCAGTGTACTGAATGTGACTCCTCT
GATGAATCGGAAAGCGAAGTCGAAATTTTGGACGATATTAACGACGGAAT
GCGTCGAAATAAACGGCGGAATACTCGACAACCGACTAAGTTTACACCGG
AAGAACCTAAGAAGGATTTCCCTCTAAAACGGAAAAACGAGGACGAATCG
GGATCAACTAAAcctaagaaactgaaaaagaaagtaaagaaaCCTAAAGA
GAACTCGGAAAAGAAAAAGGAATCCAAAACACCGCCCGTTAAAAAAGAAC
GCCTTCCGCCAGTCAAAAAGGAGAAACCACCCTTGTTGCCTTTAGGAGAC
TGTTGTATATGTAACAAGCCTGGAGATCGAACAAATATAGTCAAATGTGA
CGAatgcttgaaattttatcaTTTCCAAACGTGCCTTGATCCCCCTTATT
CGAAAACGCCTAAATCGAAATTTTACGGTTGGATTTGCGAAGAGTGTGAC
GAAACAGATGAGGATTACGTCGAAGATGAGGAAAACGAAAGCGGAAAGGA
AGTAAACGGAACGGAACATGTGGAAAAGGACGATAAAACGgaagaaaaaa
tggaaattgTTGTCGTCGATGACAACGAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034628XLOC_034628Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054945-proteinTCONS_00054945-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054945-exon-scaffold_247-1491911889:97402..97530TCONS_00054945-exon-scaffold_247-1491911889:97402..97530Clytia hemisphaericaexon
TCONS_00054945-exon-scaffold_247-1510915933:97402..97530TCONS_00054945-exon-scaffold_247-1510915933:97402..97530Clytia hemisphaericaexon
TCONS_00054945-exon-scaffold_247-1575043694:97402..97530TCONS_00054945-exon-scaffold_247-1575043694:97402..97530Clytia hemisphaericaexon
TCONS_00054945-exon-scaffold_247-1491911889:112353..112593TCONS_00054945-exon-scaffold_247-1491911889:112353..112593Clytia hemisphaericaexon
TCONS_00054945-exon-scaffold_247-1510915933:112353..112593TCONS_00054945-exon-scaffold_247-1510915933:112353..112593Clytia hemisphaericaexon
TCONS_00054945-exon-scaffold_247-1575043694:112353..112593TCONS_00054945-exon-scaffold_247-1575043694:112353..112593Clytia hemisphaericaexon
TCONS_00054945-exon-scaffold_247-1491911889:113093..115649TCONS_00054945-exon-scaffold_247-1491911889:113093..115649Clytia hemisphaericaexon
TCONS_00054945-exon-scaffold_247-1510915933:113093..115649TCONS_00054945-exon-scaffold_247-1510915933:113093..115649Clytia hemisphaericaexon
TCONS_00054945-exon-scaffold_247-1575043694:113093..115649TCONS_00054945-exon-scaffold_247-1575043694:113093..115649Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_247supercontigscaffold_247:97402..115649 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.72007	3.05487	1.71438	1.31578	17.2505	12.3658	12.368	14.1082	7.19362	10.7498	7.85525	5.64185	5.00029	5.55347	7.54527	9.53692	9.73996	7.62294	3.26074	3.55733	6.48682	6.09417	15.9988	17.2781	9.9922	11.7445	4.09866	3.57195	14.8933	17.3585
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001965Znf_PHD
IPR013083Znf_RING/FYVE/PHD
IPR019787Znf_PHD-finger
IPR019786Zinc_finger_PHD-type_CS
IPR034732EPHD
IPR011011Znf_FYVE_PHD
Blast
[Close]
BLAST of TCONS_00054945 vs. Swiss-Prot (Human)
Match: PHF14 (PHD finger protein 14 OS=Homo sapiens GN=PHF14 PE=1 SV=2)

HSP 1 Score: 365.54 bits (937), Expect = 2.387e-110
Identity = 214/556 (38.49%), Postives = 331/556 (59.53%), Query Frame = 1 
Query:  562 SDDE---NESI-LNESKGNGVSNV-----SISSKKV--FLVCGICLEADSNESDEILECDNCGITVHEGCYGDIDTPDDN--ASESDAPTEPWFCEPCKAGLTEAPICELCPNVGGIFKLTDTRKWVHLICALYTPYVGFRDISKLQTVVLEDIRSSMWGAHECMFCLDDNFSRTGVCISCDAGLCKSAFHVTCGQRNGFLSDIPDKAETDDNSPDLLYAHCKLHSVKQEVETRKSSWLTFQSH----VEKFQPCQDDDEKDRIDDSLK--RAKKDFMEYQRNIIQPKQPDKEYARFLSTCPEACKLLAKKADILGLLK--HPGYNV-AAAVTKGKITKHEPNLSSEFVNYFFKREMESTEITQSLKTAEPRLNKLRKEQRVLTKKSEEYHGQLEQVRKDNETLIKSCENIFAILYKLSNKKFNLPEMLRPNRVKETKGKLDET--TKLLNTVVNRCATCQLTTDQHLLALCDTCKQHYHLACLDPPLLRMPKKSGNYLWQCTEC-XXXXXXXXXXXXXXXINDGMRRNKRRNTRQPTKFTPE----EPKKDFPLK 2142
            +DDE   N+S+ L++SK N  S +     + SS+K+   L+C +CL  +S ++DEI++CDNCGITVHEGCYG +D   D+  +S S+  TEPWFC+ CK G++  P CELCPN  GIFK TD  +WVH++CALY P V F DI KL+ V L ++  S +GA EC FC D  F+RTGVCISCDAG+C++ FHVTC Q+ G LS+    A  +++  D  +A+CK H+ + + + ++ ++L  QS+    +++ +     + + RI+  L+  RAK +     R   Q   P ++  R L++   A + L +KA+++G+     P  N   ++   G+    +P L+++FVNY+F+R M   +I +++   +   +KL  EQ  L  +  +    LE+++  N  L    + I+A+L +++ +K N+P +LR  + ++   K   T  T  L  V+  C  C+   DQHLL LCDTCK HYHL CLDPPL RMP+K+ N  WQC+EC  +          ++ + DG +R+ RR  ++P KF P+    EPKK  P++
Sbjct:  281 ADDEELTNDSLTLSQSKSNEDSLILEKSQNWSSQKMDHILICCVCLGDNSEDADEIIQCDNCGITVHEGCYG-VDGESDSIMSSASENSTEPWFCDACKCGVS--PSCELCPNQDGIFKETDAGRWVHIVCALYVPGVAFGDIDKLRPVTLTEMNYSKYGAKECSFCEDPRFARTGVCISCDAGMCRAYFHVTCAQKEGLLSE----AAAEEDIADPFFAYCKQHADRLDRKWKRKNYLALQSYCKMSLQEREKQLSPEAQARINARLQQYRAKAELARSTR--PQAWVPREKLPRPLTSSASAIRKLMRKAELMGISTDIFPVDNSDTSSSVDGRRKHKQPALTADFVNYYFERNMRMIQIQENMAEQKNIKDKLENEQEKLHVEYNKLCESLEELQNLNGKLRSEGQGIWALLGRITGQKLNIPAILRAPKERKPSKKEGGTQKTSTLPAVLYSCGICKKNHDQHLLLLCDTCKLHYHLGCLDPPLTRMPRKTKNSYWQCSECDQAGSSDMEADMAMETLPDGTKRS-RRQIKEPVKFVPQDVPPEPKK-IPIR 825
The following BLAST results are available for this feature:
BLAST of TCONS_00054945 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PHF142.387e-11038.49PHD finger protein 14 OS=Homo sapiens GN=PHF14 PE=... [more]
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