TCONS_00054946 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054946
Unique NameTCONS_00054946
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length479

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054946 ID=TCONS_00054946|Name=TCONS_00054946|organism=Clytia hemisphaerica|type=transcript|length=479bp
ATACATACTGGTTAAACCCGACATCAAGACATGAGGCAAGTGCAGGAACA
TCAAATTGCTAATTGTGACTTTCTGGAGCATGAAGATGAAAATATCCTTG
AAAGTGAAGAGGAATTACTTAATCGTGTAGAGAAGTTTCGACAATTTTTA
TTAACTTTGAAAGAGGATAAAATTCTTGTTGTTTCCCATGGTGATTTTTT
GTGGAATTTGACAGCCAAAAAAGTTGATGATGAACGTTTTGGACAATGGC
TTGATAATTGTCAACTCTATGAATTTGAGTTAGATTtggattgatttaaa
aaattattcgaaaaaatctttctatttgaaatttttatgttACCTTGTCT
TTGTAAATCTTTGTGCTTCTGTTACCATATATCATTGCTTTTATCATTCA
ACTCAAattatattttgaagaaaaaactggatttattttagtagtgaaat
tttcttaaaaaatattaacaaaatgacgg
Run BLAST on NCBI

transcript from alignment at scaffold_247:97487..112025+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054946 ID=TCONS_00054946|Name=TCONS_00054946|organism=Clytia hemisphaerica|type=transcript|length=14539bp|location=Sequence derived from alignment at scaffold_247:97487..112025+ (Clytia hemisphaerica)
ATACATACTGGTTAAACCCGACATCAAGACATGAGGCAAGTGCAGTAAGT
AGTTTTTGTGCTCTTTCAGTCTTTTGATCTCTTTTGGTGTTTGCAATTGG
TGCTTTCTATCTCCTCAAACATGCTCATGTTTGAGAGATAGAAGCACCAC
ACTCTGATGTTTATCATCAATAGAACATGTGCATTCTTTATTCTACTTTT
CACGACCTTtttagaatagaccttttttcaaagaggacgtcctgttgaat
aaggccgatgaaatttacatatgagtttaccgtcgtgaacttacccaaaa
atagatgcggcatgatttcattattcattattcattattttcccaacagc
accttatccaccatttctgccaatcatgctctcttaaaataaaaaatttt
gctttgcttcaacccttcgcatcttttgcgaacgaaaaataaagatcgat
tgctacTGTGGCGCTAGATTTTGCAAAAAACTAAAATGGCGGTCAGGGCG
GTTTGGCAGATATATGGGCGGGACGCCCACTGCagttgtaggattgaggg
cggcagcattttctgtaataaatcttctttgtttacccATGTAAACATGC
GTAGAGACAATTTTAACAAAGATAGAGGTTGTAGTTGTATAGAAAtatgg
aaataatgaaaaatttatgaattttgaaaataatgaaattttcatgcggg
tgctttttagagatgcgggcggccgacggtaaactcaaatataaatttca
tcggccttaGAGCCACTCTCAATAAATTTTTAGTTCGCGTcctgctttgt
ttacatttttcagttCGGAGCACTATGTANgccataaaaacaatgataga
gccatgcataattactgtatcatgcatattgtaataattatgcatggttt
tatcattgtttttctgctggactacatatttattcaacagggtggcctct
ttgaaaaaaggtctataaaagatcgtaaaaattttacttttccagttttt
tgattgaatgaactCTCATTGACATAAATAATCCTTTTTTCAGATTGGTT
TAACcctgacagttacatcaatatgccttcttacctgtcttttttaaaaa
tataaataaaagtaatcacggaaaaaaacgcgaaaaaaaaagacataagt
ataagtgtgagaacagagtaatcaaactcgttagaaaaagtaccattaga
agtcataaaaaatcaacctgaataaatgcaatcgaaattccagagaactt
cataattccccaaacaacattacattactatgtcaaactcccatcacata
aattttacaattacagttaggaacatttggcgagttcctgtacgcgacgc
gatctaaaaaatcataacaacactcattaaaaaatgacatttgtgtcttt
tcgcactttttttagcctagatgatgtagcaaacatagtaaatataagca
cactgtgcctttaattggctgaagTTTTTTTTTNNNNNNNNNNNNNNNNN
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aaactttcgcgagcagaaacttttgcgaggtaaaaaaatcgcgaaatttg
cgacattactttcgcgaatttaagaAAACAATGTTTTCCGTGAGCGTAAA
CTTTAGCGAATTGTTAGGTAAAAATGAGAATAAAGTAGTAAGACCTTCAA
GGAAGATTTTGACCATATTTCAAAGAATGTGACTGTTTTGCCATTTTGTC
TTTAGAAAAATGCCTATGCAGTCCTCCCAATATTATTTTGGTAATGTTTT
TTACTACCTGGTATTGCCACAGTAGTAGTGTCCAACATCGGGTCCAACAT
ACGTatcatctttgtttttattaagaGGAGAGAAAAGGTTTGTCGTGTTT
TTCAGGGGGAAAACTAAACTTTGGAAGTTTAGAAACCGAATGTTAGTAAA
TGTTCTGTGCTCTACCTGCATGCTACGGCCGTCTATTTTCGAAACCTCTT
TCGAGATCAAATACCTCCTTGAATTTGTCTCGTAAGCGAACCTACCTGTA
TCAAGGTGTCTCCATCCAGCTCGAGTCACATATTCATTTTGATCATCAAT
ATCTTCATCTACAAGTTGACATTTGCTTTTCTCCAAGTCTGTTTCATCCT
TATAGAAATTCACTGATTTACATTCTTTCTCTGTAACACAACGATCCACG
CAGGCCGCTTCTTCCTGCGTGTAGAACTCTTTATAGTGTGATGTAACATG
GACTTTATCTGTATGTCTCAATATGAATTTGGCTAAACGAGTGTCTTCGA
GCCTTAGAATGTTGTGAGCAGAGATTATATCGAGATAGCGGCTCAAGCCC
TGATTTAGCAGCCCAAGCCCTGATTTAGCGGCCCAAGACCTAAATAAAAT
TGACGAAATTGCGAAATTGGGTTACGGTTATAGAGGGAATTAAATCCACA
TTAAACGTGTTTTTACCACGCCCTCCAAGAAAGAAAACGTAGACAGAGAA
TCGATATACTAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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AGAAAGTATTAAGCTTCAGTAGAGCATTCCCTTTTTTAGCAGATACCATa
taaataattcaattttacgATAACAAACAGTAGATATATTAAAAGTCACC
CCAAAAAGGAAACACCCTTACCCCAAAAACAGCCATTCTCTGGTTGATAA
TAATAACCTCAGCCATTCGCTGGTTGATTATAATGCCAGTATACATTGGC
AACGTCTCTTAAAATTCGGGACTGGAGGAGCATACCTAAGCtatgttttt
aaatttagcTTATTGAGATAAAGTCTTCAATGCACCAGGCCTGGGTATGT
GTAAAGATATCACTCTGACctacagtgtagctggaacctcgatattccag
gattagaaaaagctatacctgttatcttttttctttaaagaatcaacaag
ccatcaacatcgataaattacaaacATTtattcctcagaaacttttaaaa
ttatctgccattatgactttcttgaagccgttccgaaattaaccaatcgg
gttaggtatcggaattcctatgggagttcttttccgagatttgtaaaata
gctaagtcggcaaaaaaacttttcccaggggtttgaggaataaacagaac
tgttatcgtttgtgttttatttaaccatatatttaaatttgcgctcaaaa
atacttaaatgaaCAAGTTAATAACATATACTATTTGTATTTCTCAggaa
ataaacacttacagaacgacatagttgatcatttgaaatacccccgtgtt
tgggccattctatcgtgggcgccaaatagggcggaaactaagtagcaccc
tcagtgcaagattgccacctcatctttattcgcccgcgcgaaaacgcgag
ctaatcatttttttctcgcgcgctcaagcagttacatcaatatgccttct
tacctgtctttaaaaatataaataaaagtaatcacgaaaaaggacgcgaa
aaaaaaagacataaatgtgagaacagagtaatcaaactcgttagaaaaag
taccattagaagtcataaaaaatcaacctgaataaatgcaatcggaaTTC
CAGAGANggaaaatagtaagaaacttaattttacaagtggcatttagttt
ttgctggcttatagaatggcaggatcctggatggtttccctaactgaatt
acgtcagagtagactacgctcgccaccgaagagttttatttggaaagggt
aattatattttattgttcgcttcttttttaaagattcgccgggttggaaa
agtatgaatttctttgtacatattttacctaccccaaatatttaggaggc
tgagttttaaacaaatcgtcaagttgaaacaaacgataaatgtatcaagg
tctgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNc
cctggtgacttaacaaaagagacttaactcgatgttacaatccaattatt
gaaagtttgtctctgcctttttataatgagcaagacatacgttctctgat
tactcaattttcatattgacattttcgaggcattttgatgtaactgcctg
aAATACTTCAGTTTCTCAAAATTGAATAAAAGGATAAATAGGTTCTCTCc
taaattttgctttttttgaggaccctgccgacgcaccggactgtccggtg
tatttgtccggtggcaaaaaatatccttccgctacaccggacgcaataag
tccggtgtcagtccggtgttgtatacagggaattttggacgccagacatt
tatgaaacaaaaattaagaaacaccggacggaCCCGACTGGTCATGTCCA
ATggtttgattgtccggtggNTGccagacatttatgaaacaaaaaattaa
gaaacaccggacggaCCCGACTGGTCCTGTCCAATggtttgattgtccgg
tggaaaaaatatccttcttctacaccggacatccgacttccttaagtctg
gtgtagagattgtccggtggtaaaaaaaattcccatTTTACACCGGCCTT
TCGCATGTctggtgttcgttaagtccggtgcgtggGCAGGGTCCTTTTTT
TTGTTATTGAGTAAAAAggttctatctatctatctatttaatTAAGTAGC
ATTAGGCGTGATCCCATATTCGTCACATTCTATCCTCTTATATAATATAG
AACCATCATCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTACCTCCGCTCTCTGtg
taaggtttagataagctatgatagcatcacttaataagaacttttttaag
tttttttttcttcaatctttttcttaccacaagcgattattcaaggctga
gatatagaagaacgggtataggcgtttgcgcctgcgtttggtgactgaca
ttttcagtttcagtttcactacttacactttcagccagcgagtgagcgag
catgataattgatttccaggtcaaaatgtttgacacttgatccaatcgtt
tgcttatctttcttgcgtggttgtcaattgaatttcaatattcaatgctt
ataaaatacggttgttTATAAGGGTATCAAACTCATCACTAagagggaac
agatcatagattcgaattgaacgcgtaattactaatagcaattaacatta
cataacgtgtcgatatctcttcactcCCATGAAATGTGATTCNNNNNNNN
NNNNNNNNNNNNATTACATAACGTgtcgatatctcttcactcCCATGAAA
TGTGATTCAAAATTAAAGCGATGAGcacgaaaacaaaatcaagaattgga
aaatttgacacccagagggatcaaactcggaaacccatgcttatgagaca
gacgctctaaccatttgagctaaccacgcttgagAGAGTCTGAGAGTCTG
AGCTTTCCCTCAGACTTtcccaagcgtggttagctcaagtggTTAGAGCA
TCTGTCTCATAAgcatgggtttccgagttcgatccctctgggtgtcaaat
ttttcaattcttcaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtcagccag
cgagtgagcgagcatgataattgatttccaggtcaaaatgtttgacactt
gatccaatcgtttgcttatctttcttgcgtggtcgtcaattgaatttcaa
tattcaatgcttataaaatacggttgttTATAAGGGTATCAAACTCATCA
CTAAGAAGAGAAaacagatcatagattcgaattgaacgcgtaattactaa
tagcaattaacattacataacgTGTCGATATCTCTTTTAAATAAATGTTT
TCTTAGTTTTACAATTGAGCATGACTTTTACTTAGCTTTCAATCTGGAAC
CTGGttatttttcagccatttttttcaaattaaaattgacaaaatcaaag
aaaatgtcaaaaccCTTTTATCCCAAGGTCGCGTTTTATCTATATCtttg
actttgttttttttataatatgtaTGTCATGCCATGACATGATGGCGGCT
GGTCCCCACTAAATCCTGCCCTAGCAGAAAGACTTAGATTATTTCTCGAA
GATTCTGTCCCAACCTTGTTTCGGACCACCAAAGTAATGCAATCGCTGAT
TTGAAACCTGATACTCTCCAACCACTAGGCTACCAAGCCGCTGAATAATC
CTGCAAATTATTAAATGAATTTATAAATTTACATATATAGTATTATAAAG
AAAAGGGTATACAGACCTCACGGTTAGGCTAACTATGATCGCAGTTCTCC
CTTACTCACGAAAGCCCGACAGTCAGCCAGTGCACTGTCTGCCCGCCGGG
TGTGGAGGTTACCataggatcgtctaatatcgacatgcgtcttctaattt
cgacaccggatctgtaaaataatcaaaacaaaccttgaatgaaattcttg
gtatcattcttatcgaacaagttcacccatcaaactagaagttcagtaaa
cattgcaatcctttcaataaaaaaaacagccaaatgaTAAGCAGTTTCAC
aaaacacacgaaacgcatgcaaacttcctcgtaactttcttgtgtccatc
attaaaattttataactttattacgcttcaagtcacgtgataaaaataat
ttgcgcgcttagtcgacctggtttctCTGTCCTTATTGTTTATGAAACTT
CTaggcgccgcacctagcacacccggtcccttttcaaattcataaggaaa
ccgggttcttttaattattttcggttcacggtaaaaaggtctactaaaaa
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNcttcgttgaaagcatgctaattagttttttagtgattactaca
tcgttaaagttttcttttcaaatataagtaataacacttcacatttctca
tattatattttaataatctgtgacgtgatagggagagtacaatttagtga
ttgattgagaACTTTGGTAtctatttgtttatgtttgattttttatttcg
aagaccagcctattgtctgtacacaaacccaatatctacggctaatttca
aaattcattaccgtagagggtctgttgtcattgtcttttctggtttgaga
tttttcaaaccaaccgctACGATGGAGTGCTATTGGAGTTTGGCAAGAAA
TCGGAGGCGATAAGACAAAATGGCCGTCAGAGTTGTCAGAAAGTATAGAA
GTTTgtcgaaaaaaagtgttttcatcATAACCAGTAATAACAAAActgac
ttctttattttttaataattggaATAAAAGAGAGCTCTAattgaagacat
tctattgcaaaataactctttttgcacaaatcgaatgttttttgtttaca
ttttggatcTTTGAGTTCACGAACATGAGAGAGAAGTTGTTTGNNNNNNN
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TCTTTTGCTTTGAAGCCATCATTGATGTTTGGTACTATAATTTCTGGAAT
TTTCCAAGTATATATGATCCTATATCTTTCTCTCCTTCTCTGAAGTGATT
ATATCTTGAGCTGCATGAGACTATTGCCTTATTTTACGCCCACAATAAAA
TGATCTAAATATAGGGATGTGACAATGACCCATAAGCTATCTAATTTTCA
ATTAGCTGTAAAAGCTACAGAAGAGCATTTAGTAACATGAAAGCCAGACA
GTTTTGATTCCCACTGAACATttatattctggttttcatgttactaAATG
CTCTTCTGTAGCTTTGTTATAGTTACTTACtataaacatcaatttttcat
atCTACGAAGATTAATAACAACGCTGTCATCAATCAATATAAAAGATAAT
CCAAAAagttttgtctattttctgatCAAGATAATAATGGGGAATTTTTT
CggattaccttattacacgaatattactaggcaagcaTTCAacagccttg
aaattaacacgcaaaaaattaacacaaattttatttgcttattcaaggac
accacggctggttttaattaaggggatCTTTATTTACacgaaatatttca
atttgtgttaataaaatgactagtaatatttgtATAATAAGGTATCTTTT
ATATTGTTTTACTTCAAGTTGTCAGCTGGTCATGGTatttgacaatcaaa
caaaagattttctgaaaaaggtcTTGTAAACAATTAAACATTTCACAGAC
AAGAGTATGAGACATTTAAAAAGAATGAAAGTTGTTGATTTGCTGAGACA
TGCTCAAACAAACTTTAATATCAAGAAAGATGTCATTTCAAAGAATATTC
CTATAAATTCTACTGGTTTAAAACAATGCCAAGAAAGTGAAATTTCTAAA
CATTATGAAATGGTAGTGTGTTCACCAATGCGCAGGTGCAAAGAAACGCT
TGCCAACATTCAAGGAATCACTTATAATCAGATAGTTCATTCCGATCTTT
GTAGGGAACATCAAATTGCTAATTGTGACTTTCTGGAGCATGAAGATGAA
AATATCCTTGAAAGTGAAGAGGAATTACTTAATCGTGTAGAGAAGTTTCG
ACAATTTTTATTAACTTTGAAAGAGGATAAAATTCTTGTTGTTTCCCATG
GTGATTTTTTGTGGAATTTGACAGCCAAAAAAGTTGATGATGAACGTTTT
GGACAATGGCTTGATAATTGTCAACTCTATGAATTTGAGTTAGATTtgga
ttgatttaaaaaattattcgaaaaaatctttctatttgaaatttttatgt
tACCTTGTCTTTGTAAATCTTTGTGCTTCTGTTACCATATATCATTGCTT
TTATCATTCAACTCAAattatattttgaagaaaaaactggatttatttta
gtagtgaaattttcttaaaaaatattaacaaaatgacgg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034628XLOC_034628Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054946-exon-scaffold_247-1491911889:97487..97530TCONS_00054946-exon-scaffold_247-1491911889:97487..97530Clytia hemisphaericaexon
TCONS_00054946-exon-scaffold_247-1510915933:97487..97530TCONS_00054946-exon-scaffold_247-1510915933:97487..97530Clytia hemisphaericaexon
TCONS_00054946-exon-scaffold_247-1575043694:97487..97530TCONS_00054946-exon-scaffold_247-1575043694:97487..97530Clytia hemisphaericaexon
TCONS_00054946-exon-scaffold_247-1491911889:111591..112025TCONS_00054946-exon-scaffold_247-1491911889:111591..112025Clytia hemisphaericaexon
TCONS_00054946-exon-scaffold_247-1510915933:111591..112025TCONS_00054946-exon-scaffold_247-1510915933:111591..112025Clytia hemisphaericaexon
TCONS_00054946-exon-scaffold_247-1575043694:111591..112025TCONS_00054946-exon-scaffold_247-1575043694:111591..112025Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_247supercontigscaffold_247:97487..112025 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.9345	1.02804	0.552968	0.925493	0.19666	0.749498	0.207994	0.599706	0	0	0.377059	0.156306	0	0.0713448	0.776237	0.7065	0.696614	0.103441	0	0	2.81054	1.56425	2.37176	3.05183	0	0.97597	2.90362	0.860289	6.02267	6.23362
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054946 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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