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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054948 ID=TCONS_00054948|Name=TCONS_00054948|organism=Clytia hemisphaerica|type=transcript|length=1614bp
CTGGATAATCACAGTCATGCTGACGTCATTCTTCATTTTATGtgTTGTCG
ATGGGTTGAGCATTGTCCGGTCAGGATCTAAAGATACAAAAGATCTGACT
GCATTGTTGAAAGTCCAGCGTGACAGGGACAACGTCACTTGTCAAAATTT
GTACAAGGTCTACTGGCTAGTCAAGAAAGATCAGTTCAGTGTTGCATCAC
CCAAACAAAACATTAACTACGTCATTCAAGCCTGCAAACCAGATATCACA
AACTTATTCTGCGCGGATGAAAGTAACGATCAAATTTGGACAGCTGTCcg
attttgtgacgtcattccGAATTCTGACTTCATTGTGTGTAAAATTTTTC
CGAAAGGATTCGAATCGTACAACCATTTCGCGAATTGGACGATGGAATCT
TTTATCTACAAAGTTCGCGGAGAGGATGCTGGGAAATCTGTACAAATGAA
TACAAAAAGTTTGGTCATCACACCTTTCTACAGATGTCCGAGAATCAAAC
TTGTCCGGCCAAGCCATCAATTATTCAACTAAAAGCGAACAGAATCTTAC
AGACGATCAAAGGAGACTCCTGATCCTCAAAATTctttaaaagaataaat
tttAATCCCATATCGCAATTTTTTTCCACAGTCAAAACAAGATTGGGAGT
TTTCCATTATTGAAGGTCTGTAAGACGCATGAACTGGACCCGACTTAATG
AATATGAAACAACCAAAAGATTCTTGACGATAAATCAAGAGcaacatttt
attttatattcgTATCATTACACTTAGTTTTTTAATCCTGCTAAGAGACC
AACTTCATTGTATCCCAAAAAAAAGGGCAAATTTTAAATGAAGTAAAATC
CGCATAGTTTATGTAGaattttatgacttgtataactgatattgggctct
tccagaaaaaatccgttcatggggggtggaggatgaattgtccaggggta
tttaaaaaataccaaaaaaatgcaatgtccagggggtaattttttgtgtc
cacggggttgatttgatgtttgtccaggggtataacccgtgtccaagggg
ttaaaaatcaaaatatccaggggtaattcatgaaaaaaataatatatcct
ccaccccccatgaacggattttttctggaagagcccatttcaaGCTCAAA
AACATTCAATCATTTTGGGACTATCTATTGATTAAACAGAGTAttgttat
tttatttcaatcattCTAAGCCAAGTTCTCAGATAACgagttttgaagat
tttacttTATGTAAAAGtttgtccgctttttttgggacacactgtatctA
ACATCGTAGGCAGGAAAATGCTTAAGACCACTTATAACGAATTCTTTCTC
AAAGTTTTCTCAAAGACAATTTAAATCAGCCTTGGATTGAGACAATCATG
CATATCTTTTTTGCATTGCCTTTTCATAAGTTTATAGCTTTGAGGTATTT
TATTGGGCTATTTcaattaaatattttatttgctGTTATATAACCTTAAT
atatatttcattatttttaaacCGTATGTCAAcccaaaatttttataatt
attcTTTACTTTAAGCACATGTATTTACTCATTTCAATAAATTATAACCG
ACTTTGCAATTTCA Run BLAST on NCBI transcript from alignment at scaffold_247:240712..249568+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054948 ID=TCONS_00054948|Name=TCONS_00054948|organism=Clytia hemisphaerica|type=transcript|length=8857bp|location=Sequence derived from alignment at scaffold_247:240712..249568+ (Clytia hemisphaerica)
CTGGATAATCACAGTCATGCTGACGTCATTCTTCATTTTATGtggtaata
ttcaattttatttttcacatttttcgtcCATGATGGACCTGTCAGTTTCA
GTTCATTTCAACGTCTGCTTGTAAGCTCGTAACTGCCAGGTATCGTAGTT
AAACAACCTGCACTGTTTCACTTTTATCTATTCTTATAGGATCCAGTAAA
ATTTCTGTTGAGGGTTCGgttgtttcaatttttatgacactttgcacctg
aaattgttttttttctggtcTTTTTTTGGGGTTATCTTTAATATTGGGTT
ATTTCAGACTTACCCTAAATAAATTGACCATTTATTTGCCTAAAGCTCAA
TCATTCTAGGTTCAGCATGTTCCtaaattgttctcattttttcagCAGAT
CTTAGCCTCGTTGTTCGTATAACATTTTCCTTACAGAAAGGGTCAATGCT
AGTGTTAGTTTATGCCACAATAACCAGCACTGCTTATCGAATCATGTGTG
TATTCAAGCGTGACACTGATTGACAGGGCCAATTTTTGTCTCTTTATCGA
TTAGTCCTGTGTTTTCTTGTTATgaatttttctgagaaaaaaaccTTAGG
TTTTATTTTGGCATCAAATACAAAAGTTAATGAAAAGAGGTGGCTTTAGC
AAAATAAATCAagatcaaaatacaaaaataatttcacaAGAGATTCCATT
TGATGTATACATATTGTCAATTATAGACCTATGTGTTCTGGTCACGACTA
ATTCTGAGAAAAATTTGGacctttaaaatttaaaattaacaaaaagtgac
tcagcaaaaaatatcaaaacaaaaaaaatttccaacttttCTAAGTACTG
GTCAATTTGGTCATAAAGATccaagacaaaaaaaaaataaattcagatTG
TAAACCAATTTTCAGTTTCATTACAGTGGCATCTGAATGTCAAAACAATT
AACGAAGGAGAGTTTAAATCCCCATAGGCATTACAAACAAGTCAACCCCA
TTGCCATCGGACATCCTTCACTGACTCGAAGCCAACAATACGTTACATCC
TGAAAATAAAGTTTGCATAAAAttgcaccataatatggaaagtaCAAAAT
CGTCTTTGGTTAAGGAACTACTAAATTCGGTCAAGCGTGATTTCACCTTC
GATTATCCGAAAGATTTTTTCGAAGCTCGGTTCGTCCGCTATCACTTCTC
AACTTGCATAAAAGCGTTAGAATAACATCCATCAAACCATCATAACTCCC
TCATGACGCTATTTTCATAGTGTGCATTATGACGGTTACGCACAACAATG
TGTTACACAATAAGTTTTACCGGAAGATAACGGTGGGCAAGTTTATGTTA
TTCCGGATGTTTCCAGATTAATCTTATGGCCCGAGCATCGAATGAAATTC
CCTTGGGTATCCTCAACTACGTAAATGAGTTTTATTTTTGTGCGATTTCT
GTTCCATCATGCCGATCTGTGCAAGGTATAAAATCAGTGAAGTTTACACA
AAATCATTTGAATAGCAATCAAACTTGGTCAGGTGGAAGCACACTCAAAT
ATAACAGCAGAAGTTGGAAAATAACTTTGGTTGAGGGATCCGAGATGTCA
AATTATTGCTTTCTCCTGATTTTGATGGTATTTTCTTTCCAAGGTAGGTG
AATGCGCTGAAAATAGGGCTATTTAATCAGATAATAGGGCTATTTAATCA
TGAAAAAAACGTGAAACTCTTGATTTTAAGGTCCTTGACAAAGAGGCACA
GTTTGTCGGTTGGGTAAACGTGACAGGTGTTAGTTAAATGGACAATCAGG
AAGTCAGAGGATTATTTTTACCTGgagatttgatttatttttctaacGAA
TTTAAAACATTAAACCAGAGTACAGAGTACAGTAAATGACCATGTTCATA
AGATCATCAGGTTTTATAATTGTGTATACCGCAAGacctatttccaaaaa
aaaaggaaattctttACGTTCAattctgaaatctttttttaggAAACATT
TtcccaataaaatttttttactaATGTTTGATTCTTCATAAATATTCCAG
GTGGCCCTAAAAGTTGAAAAAccgagaaaaagtgaaaattgaaaatttcg
actTCACTTCATAATAATAGGGCCCTGGTATACTGCCTAAGGAGGTGGTA
CCATGGTTGGTCCAGACGGGCTAGAATTTTAGTCCTTCTAGAACGCCTAA
AAAAGGTCTGTTTTAAGGTTATTAAACGAAATTTGGCCTCATTAGTATAT
TTTGTTTAATTGCTCTGCAAAAATGTGGTCGGGTCACTCCAGTTAAGAAT
GTCTGGAACTCTTATATTTTCCTATTTTCGGTTTTTAGCTCGGACATACC
CTTATCTCGATAACCGAGTAACCTCTCCCGGGGTATAAGGGACTGTGGAT
TCCAGTTTTGACAAAGCTAGAGTAGATTAGTTTTTCTGGATAACAGCGTA
ATGTAAACCCTTTGTTTATGATCATTTACCTCGCCCTTTCACCTTTGcta
aaaaaatactcaaaaaagccttgaaaaaaTGGTCTGTAAAAAATGAATCA
AAGCAAATTCGAAGAAAGATAAcggtttttccaaatttccaaaaaaatac
tttttcaaaatttgatgacgtcaacaaaaatcagaaattctaatttttac
taaaaaaaatgctgacgtcgaaaattcgaaaaattgctTTTGTAAAACAT
TACTTGCCTACCAAattagatcaaaatttgagaagtTATgagcatttcaa
atttttcttaaaattttcagaaatatcTGAAAGAGAATGGCCTATTATTT
TTAGAAAGATATTTAAACCTTTTCCGATGCAGGATAAGGTATGGGGGAGG
GCGAGACAATCTTGTAAATGTGTTGTATTTCATGCTTTAAcagggaaaaa
tgaaaaactttgaacaaaaagtaaagaaattgcccaaaactaagaaaaaa
aatgactttttgagATTTCGATCGTTATTCGATCATATttggcgagacca
atttaatttgttgttctacgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcttgaataaa
gctgaaaattaattcaagaaattgaaaaatcataaaaagcattccataca
ctaaaattttattatgatcttcatcgaagataaaaaaaaaagttaatttt
tgatccagatactttttgggaaaattttctcggtaccttaccaaccctga
taaatgaaaaaaaaattcttattttgccgaccgaccgacccatatttttc
taacgatctgtccgtagaacaacaaattaaattggtctcgccttggTAAC
CAGAAAAAACCGCCTCATAATTTACATTAGCATGACAGCTATATTTTGAG
GCTGTAAGAAGCTATAACTAGCCCAGAATACTGTATTATAACGTCATTAA
CATTACGTTATAAAGCTTAAAATTTGCATTGAACTGAAAAACTAATTGTG
ATATCAAAGTTCACTtataatgatgacgtcagcatttttaaacaattttc
gttTTCTGGTTAAAAAAGACGTTAGCTTTTTTTCAGCAGGCGCCGCGGCA
GCGGGAGGGGGCCGGTCGGGCCTTGAcccgaccacattttttcaaagcaa
aaagaaaatttactcaTCAAGCCAAATTCTGTTTAATAACCTTAAATCAG
AACTGTTTTAGGCGGAATCTGGAAGggctaaaatctaaaaattttcaccc
gtcggccccaactatggtggcgcctccttgtCAGTATATCGTGGCCCTAT
CACTTTCGAAGTGGAGCCGCGGTCCGGCAGTTCAGGCACCTAAAAGAAAG
TAGAAACTATAGGCTAATTAACGACTGTGAACAAGCTTCCAATTCCTAAA
ACCGAAGATATTCTCATTTTTCGAGggcaaaaatgctgaaaaaatggaat
cttgatttttttaactcCCTCTGCTTAATATGGAGAACCAAAACTGGtta
ctttattttgaaaaagtgagtaACAACTTGTCGCCAAGTGTTCTTTGATA
CATTATTTTTTGCACTGGCTAAACATAATTCGAGTGTTATCTTATGTGCT
ATCTGAAAATGGGACATCTCAAGGCTATGAATCGCCCCAAAGCCCATTGG
ATATTGTCCACCCAACACTACTTATGATAAAGGTAACCATTGAGATCACA
CAACTCTCGCATAATACAAACTACCTGTATTTTAGAATGGTAAAATCAAA
TTTCCCTATTacgaaatcatttttaaaacaaatagCAACAAAACTTCCCA
CTCATAAAGCTAAAATCTTCCTGTCTCAGAATTAACATTTTTAACATTAT
TCAGACTCTTACCTATCTCAAGTTACAGTCGTCACATAGTGAGAGAGAAA
TCATAGAAGTGTTGGGCAATATTTATGCATACGTCAGCTATATTGTTTCA
AATTGTCTCTAATTGCCTCCAAAAAGTGCTGTGATGATAAAAACAACAAC
TTCCCGAGGAGGCGGGGGATTATTTTAGTCATTATTCATCCAGCTTCGTG
TGCACAATTCCCTGAATTGCAAAATCTTCCTAACATGTCATTACCATGTG
atttattagaattttttttttgtgcagtacagtattttttttaaagttaa
aatattGTAGAAAGTGTCAAgtcattattttttcataaattacgtgtCAA
ACACTTTTTGCCTCATTTTGAAACGATTTCTTTTTACATAATTATCTCTC
TTATCTTTaaattttaggggatttttcaGGCTTGAAAAACTAGCTGTCAG
TGTCTTGAAATTACTCCAATATAAGGCACGTCTCGTTCATAACATGTAAA
GTTACAATTCATTGTCGATTGAAAGTATACGAGTATACTCCGAGGCTCCT
CTTCGATAGCTAACTACCTGTCACCCGGTAGGGGAGGACAACAACAATTT
CTCTCTGGATTACGCTACTTACCTTGGGTCCTTCCCTTTAATCTCCGATT
GTCAAGTTGAGAGGCCTCAAATACCAATTTTGTACTAAGTACCAAGCCTT
TTAGGGTGATTAGGTCGGGGATTGAGCCGACGAACTTGTGCAGCGATCCA
AAAGATGACATTTATATATCTTCCGATGATCGTCAGAGGCAGAGAAATAA
AAGGGCCCGAAAATTGTTGCAAGGTAAAGTTTTTGACCTTGAAAAGTCAC
GAGAGCTTAATCTTTGAAACAGACCGTACATTACACGAGCGAAGATCTAG
TCAGCACAAGGTCGCACTTGTGAGTTACTTTCAAAACTGTTTCAGTTTCC
TTCCCTTCCCCAGTGTATTGAACGAGAGCGTCTTGAACGAACCAAATTCT
ACATTTTTCAGACTTGTTATCTCACGTTTGTAGATTGCTATGGCAACCAA
ATTAAAATGTCGAGATTTTACTTTTTGAACTATACATCCGAGATCAGGTT
ACAAAGTTTGATATCAATTCTAGATAAGATAGTTGAGGTGatattttagt
ttttaacaaCAATATGACTATTATGATGATTGGGTTTTGATCTGGTCCGT
CTTAtacctaaattttatttttcttgatcaTCAATATGATCCTATAAAAA
CATTGATAAAAAGGCTGTAAGCTTAAACGCTCTGTTAAAAGAGGAAATCA
TATCCTTGCCAACATTTCATCAAGATTTCCCCGAAAAGGCGACCTTCTAA
GAAAATAACttatttttgttgaaatctgcaaaattttacTGAGCTCAATA
GTTGAGAGTTTCCGATACATAGTAGGTCAGAACACGAACTAGAAACGTAA
AAATAAACGTCATGACGGATGACGTGATTTTGGGGCACAAAAAGGGTACA
AAACCTTCAAAAATAACATATACTTGCTAAAATGTTTCACAAAGGTTGCA
CGATGCATGATATAGTAAgcattttttaaagtaaattttatagcCTTTTT
CTCTAGTATTAGATTTAATCAAAACTATCTCTTACTAAAGACTATGACGT
CAGTGTACGTAGTAGGTATTAATGCCGATTTGCtattttcattcatttgt
tAGCAAATGCTGATTCGGCAAATAATTGCATTGAGCGTGCCACTCTCTAA
AAAGAAGGCTTTTTATCTACCAATCATAAGTTAAAACCCGTGAGAATTGG
GAAATACCGCCGGCTTTAAGCAAGGCTATTACTTTAACAAAACATCTTCA
AGCAATATTTCGCAATATTGACATGTTTGACAGGCATGTTTGAGAGAGAG
AGGTTTTTTACGTGGCCGAAAGTAAAATGATTATTGATGCGTAGCAGTCC
GATACAACATTATGAAGTAAGAGGACAACCCGGAGCAAAACGGAGAAAAG
TGCTTATCTGTTAATTGTTGAAACGGGTAATTGTATTAAAAGATTCTCAG
ACCCGGTGTACATTTTCTAAGCATTGAAACAATGGGAAAGTACCGTATGA
TTGCTATTAATAAGATGGGGCAGATGGCAATTAGGGCAAGACCAAACTGT
AGACTTGTAATTAACGAAGGTTAAAAGAAAGCAAGAAGCAAAgttcaaaa
aaaatgaattatcttactatttttttgttttctcttgtaGTTGTCGATGG
GTTGAGCATTGTCCGGTCAGGATCTAAAGATACAAAAGGTAACTCAAACG
GTTGTGAATTATACAGGGCTTCCAATTCTTATTAGCTATTCAATGATCAC
ATTgcaacatttgttttgatttggaatTAACATAAGTTACTGGTCCTCTC
TCTTTTTAAAATAAACAgtatatcatattttcaagacaaGACTTGTCAAA
ATAAATAAGAGTGTATTAAGAGTGTTGCTGATCCGTTGTTTAAGAAAGGT
TTGTATAAATTAAAAACGGTTGCTGAAAATGTAAAATTGTTGTGCATGGA
TAGTAGGTAATAATATTTTCATTATGTATTTTTAGATCTGACTGCATTGT
TGAAAGTCCAGCGTGACAGGGACAACGTCACTTGTCAAAATTTGTACAAG
GTCTACTGGCTAGTCAAGAAAGATCAGTTCAGTGTTGCATCACCCAAACA
AAACATTAACTACGTCATTCAAGCCTGCAAACCAGATATCACAAACTTAT
TCTGCGCGGATGAAAGTAACGATCAAATTTGGACAGCTGTCcgattttgt
gacgtcattccGAATTCTGACTTCATTGTGTGTAAAATTTTTCCGAAAGG
ATTCGAATCGTACAACCATTTCGCGAATTGGACGATGGAATCTTTTATCT
ACAAAGTTCGCGGAGAGGATGCTGGGAAATCTGTACAAATGAATACAAAA
AGTTTGGTCATCACACCTTTCTACAGATGTCCGAGAATCAAACTTGTCCG
GCCAAGCCATCAATTATTCAACTAAAAGCGAACAGAATCTTACAGACGAT
CAAAGGAGACTCCTGATCCTCAAAATTctttaaaagaataaattttAATC
CCATATCGCAATTTTTTTCCACAGTCAAAACAAGATTGGGAGTTTTCCAT
TATTGAAGGTCTGTAAGACGCATGAACTGGACCCGACTTAATGAATATGA
AACAACCAAAAGATTCTTGACGATAAATCAAGAGcaacattttattttat
attcgTATCATTACACTTAGTTTTTTAATCCTGCTAAGAGACCAACTTCA
TTGTATCCCAAAAAAAAGGGCAAATTTTAAATGAAGTAAAATCCGCATAG
TTTATGTAGaattttatgacttgtataactgatattgggctcttccagaa
aaaatccgttcatggggggtggaggatgaattgtccaggggtatttaaaa
aataccaaaaaaatgcaatgtccagggggtaattttttgtgtccacgggg
ttgatttgatgtttgtccaggggtataacccgtgtccaaggggttaaaaa
tcaaaatatccaggggtaattcatgaaaaaaataatatatcctccacccc
ccatgaacggattttttctggaagagcccatttcaaGCTCAAAAACATTC
AATCATTTTGGGACTATCTATTGATTAAACAGAGTAttgttattttattt
caatcattCTAAGCCAAGTTCTCAGATAACgagttttgaagattttactt
TATGTAAAAGtttgtccgctttttttgggacacactgtatctAACATCGT
AGGCAGGAAAATGCTTAAGACCACTTATAACGAATTCTTTCTCAAAGTTT
TCTCAAAGACAATTTAAATCAGCCTTGGATTGAGACAATCATGCATATCT
TTTTTGCATTGCCTTTTCATAAGTTTATAGCTTTGAGGTATTTTATTGGG
CTATTTcaattaaatattttatttgctGTTATATAACCTTAATatatatt
tcattatttttaaacCGTATGTCAAcccaaaatttttataattattcTTT
ACTTTAAGCACATGTATTTACTCATTTCAATAAATTATAACCGACTTTGC
AATTTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054948-exon-scaffold_247-1491911889:240712..240755 | TCONS_00054948-exon-scaffold_247-1491911889:240712..240755 | Clytia hemisphaerica | exon |
| TCONS_00054948-exon-scaffold_247-1510915933:240712..240755 | TCONS_00054948-exon-scaffold_247-1510915933:240712..240755 | Clytia hemisphaerica | exon |
| TCONS_00054948-exon-scaffold_247-1575043694:240712..240755 | TCONS_00054948-exon-scaffold_247-1575043694:240712..240755 | Clytia hemisphaerica | exon |
| TCONS_00054948-exon-scaffold_247-1491911889:247702..247749 | TCONS_00054948-exon-scaffold_247-1491911889:247702..247749 | Clytia hemisphaerica | exon |
| TCONS_00054948-exon-scaffold_247-1510915933:247702..247749 | TCONS_00054948-exon-scaffold_247-1510915933:247702..247749 | Clytia hemisphaerica | exon |
| TCONS_00054948-exon-scaffold_247-1575043694:247702..247749 | TCONS_00054948-exon-scaffold_247-1575043694:247702..247749 | Clytia hemisphaerica | exon |
| TCONS_00054948-exon-scaffold_247-1491911889:248047..249568 | TCONS_00054948-exon-scaffold_247-1491911889:248047..249568 | Clytia hemisphaerica | exon |
| TCONS_00054948-exon-scaffold_247-1510915933:248047..249568 | TCONS_00054948-exon-scaffold_247-1510915933:248047..249568 | Clytia hemisphaerica | exon |
| TCONS_00054948-exon-scaffold_247-1575043694:248047..249568 | TCONS_00054948-exon-scaffold_247-1575043694:248047..249568 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_247 | supercontig | scaffold_247:240712..249568 + |
Blast
The following BLAST results are available for this feature:
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