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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054950 ID=TCONS_00054950|Name=TCONS_00054950|organism=Clytia hemisphaerica|type=transcript|length=1791bp
ACCGCCGGCTTTAAGCAAGGCTATTACTTTAACAAAACATCTTCAAGCAA
TATTTCGCAATATTGACATGTTTGACAGGCATGTTTGAGAGAGAGAGGTT
TTTTACGTGGCCGAAAGTAAAATGATTATTGATGCGTAGCAGTCCGATAC
AACATTATGAAGTAAGAGGACAACCCGGAGCAAAACGGAGAAAAGTGCTT
ATCTGTTAATTGTTGAAACGGTTGTCGATGGGTTGAGCATTGTCCGGTCA
GGATCTAAAGATACAAAAGATCTGACTGCATTGTTGAAAGTCCAGCGTGA
CAGGGACAACGTCACTTGTCAAAATTTGTACAAGGTCTACTGGCTAGTCA
AGAAAGATCAGTTCAGTGTTGCATCACCCAAACAAAACATTAACTACGTC
ATTCAAGCCTGCAAACCAGATATCACAAACTTATTCTGCGCGGATGAAAG
TAACGATCAAATTTGGACAGCTGTCcgattttgtgacgtcattccGAATT
CTGACTTCATTGTGTGTAAAATTTTTCCGAAAGGATTCGAATCGTACAAC
CATTTCGCGAATTGGACGATGGAATCTTTTATCTACAAAGTTCGCGGAGA
GGATGCTGGGAAATCTGTACAAATGAATACAAAAAGTTTGGTCATCACAC
CTTTCTACAGATGTCCGAGAATCAAACTTGTCCGGCCAAGCCATCAATTA
TTCAACTAAAAGCGAACAGAATCTTACAGACGATCAAAGGAGACTCCTGA
TCCTCAAAATTctttaaaagaataaattttAATCCCATATCGCAATTTTT
TTCCACAGTCAAAACAAGATTGGGAGTTTTCCATTATTGAAGGTCTGTAA
GACGCATGAACTGGACCCGACTTAATGAATATGAAACAACCAAAAGATTC
TTGACGATAAATCAAGAGcaacattttattttatattcgTATCATTACAC
TTAGTTTTTTAATCCTGCTAAGAGACCAACTTCATTGTATCCCAAAAAAA
AGGGCAAATTTTAAATGAAGTAAAATCCGCATAGTTTATGTAGaatttta
tgacttgtataactgatattgggctcttccagaaaaaatccgttcatggg
gggtggaggatgaattgtccaggggtatttaaaaaataccaaaaaaatgc
aatgtccagggggtaattttttgtgtccacggggttgatttgatgtttgt
ccaggggtataacccgtgtccaaggggttaaaaatcaaaatatccagggg
taattcatgaaaaaaataatatatcctccaccccccatgaacggattttt
tctggaagagcccatttcaaGCTCAAAAACATTCAATCATTTTGGGACTA
TCTATTGATTAAACAGAGTAttgttattttatttcaatcattCTAAGCCA
AGTTCTCAGATAACgagttttgaagattttacttTATGTAAAAGtttgtc
cgctttttttgggacacactgtatctAACATCGTAGGCAGGAAAATGCTT
AAGACCACTTATAACGAATTCTTTCTCAAAGTTTTCTCAAAGACAATTTA
AATCAGCCTTGGATTGAGACAATCATGCATATCTTTTTTGCATTGCCTTT
TCATAAGTTTATAGCTTTGAGGTATTTTATTGGGCTATTTcaattaaata
ttttatttgctGTTATATAACCTTAATatatatttcattatttttaaacC
GTATGTCAAcccaaaatttttataattattcTTTACTTTAAGCACATGTA
TTTACTCATTTCAATAAATTATAACCGACTTTGCAATTTCA Run BLAST on NCBI transcript from alignment at scaffold_247:247267..249568+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054950 ID=TCONS_00054950|Name=TCONS_00054950|organism=Clytia hemisphaerica|type=transcript|length=2302bp|location=Sequence derived from alignment at scaffold_247:247267..249568+ (Clytia hemisphaerica)
ACCGCCGGCTTTAAGCAAGGCTATTACTTTAACAAAACATCTTCAAGCAA
TATTTCGCAATATTGACATGTTTGACAGGCATGTTTGAGAGAGAGAGGTT
TTTTACGTGGCCGAAAGTAAAATGATTATTGATGCGTAGCAGTCCGATAC
AACATTATGAAGTAAGAGGACAACCCGGAGCAAAACGGAGAAAAGTGCTT
ATCTGTTAATTGTTGAAACGGGTAATTGTATTAAAAGATTCTCAGACCCG
GTGTACATTTTCTAAGCATTGAAACAATGGGAAAGTACCGTATGATTGCT
ATTAATAAGATGGGGCAGATGGCAATTAGGGCAAGACCAAACTGTAGACT
TGTAATTAACGAAGGTTAAAAGAAAGCAAGAAGCAAAgttcaaaaaaaat
gaattatcttactatttttttgttttctcttgtaGTTGTCGATGGGTTGA
GCATTGTCCGGTCAGGATCTAAAGATACAAAAGGTAACTCAAACGGTTGT
GAATTATACAGGGCTTCCAATTCTTATTAGCTATTCAATGATCACATTgc
aacatttgttttgatttggaatTAACATAAGTTACTGGTCCTCTCTCTTT
TTAAAATAAACAgtatatcatattttcaagacaaGACTTGTCAAAATAAA
TAAGAGTGTATTAAGAGTGTTGCTGATCCGTTGTTTAAGAAAGGTTTGTA
TAAATTAAAAACGGTTGCTGAAAATGTAAAATTGTTGTGCATGGATAGTA
GGTAATAATATTTTCATTATGTATTTTTAGATCTGACTGCATTGTTGAAA
GTCCAGCGTGACAGGGACAACGTCACTTGTCAAAATTTGTACAAGGTCTA
CTGGCTAGTCAAGAAAGATCAGTTCAGTGTTGCATCACCCAAACAAAACA
TTAACTACGTCATTCAAGCCTGCAAACCAGATATCACAAACTTATTCTGC
GCGGATGAAAGTAACGATCAAATTTGGACAGCTGTCcgattttgtgacgt
cattccGAATTCTGACTTCATTGTGTGTAAAATTTTTCCGAAAGGATTCG
AATCGTACAACCATTTCGCGAATTGGACGATGGAATCTTTTATCTACAAA
GTTCGCGGAGAGGATGCTGGGAAATCTGTACAAATGAATACAAAAAGTTT
GGTCATCACACCTTTCTACAGATGTCCGAGAATCAAACTTGTCCGGCCAA
GCCATCAATTATTCAACTAAAAGCGAACAGAATCTTACAGACGATCAAAG
GAGACTCCTGATCCTCAAAATTctttaaaagaataaattttAATCCCATA
TCGCAATTTTTTTCCACAGTCAAAACAAGATTGGGAGTTTTCCATTATTG
AAGGTCTGTAAGACGCATGAACTGGACCCGACTTAATGAATATGAAACAA
CCAAAAGATTCTTGACGATAAATCAAGAGcaacattttattttatattcg
TATCATTACACTTAGTTTTTTAATCCTGCTAAGAGACCAACTTCATTGTA
TCCCAAAAAAAAGGGCAAATTTTAAATGAAGTAAAATCCGCATAGTTTAT
GTAGaattttatgacttgtataactgatattgggctcttccagaaaaaat
ccgttcatggggggtggaggatgaattgtccaggggtatttaaaaaatac
caaaaaaatgcaatgtccagggggtaattttttgtgtccacggggttgat
ttgatgtttgtccaggggtataacccgtgtccaaggggttaaaaatcaaa
atatccaggggtaattcatgaaaaaaataatatatcctccaccccccatg
aacggattttttctggaagagcccatttcaaGCTCAAAAACATTCAATCA
TTTTGGGACTATCTATTGATTAAACAGAGTAttgttattttatttcaatc
attCTAAGCCAAGTTCTCAGATAACgagttttgaagattttacttTATGT
AAAAGtttgtccgctttttttgggacacactgtatctAACATCGTAGGCA
GGAAAATGCTTAAGACCACTTATAACGAATTCTTTCTCAAAGTTTTCTCA
AAGACAATTTAAATCAGCCTTGGATTGAGACAATCATGCATATCTTTTTT
GCATTGCCTTTTCATAAGTTTATAGCTTTGAGGTATTTTATTGGGCTATT
TcaattaaatattttatttgctGTTATATAACCTTAATatatatttcatt
atttttaaacCGTATGTCAAcccaaaatttttataattattcTTTACTTT
AAGCACATGTATTTACTCATTTCAATAAATTATAACCGACTTTGCAATTT
CA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054950-exon-scaffold_247-1491911889:247267..247487 | TCONS_00054950-exon-scaffold_247-1491911889:247267..247487 | Clytia hemisphaerica | exon |
| TCONS_00054950-exon-scaffold_247-1510915933:247267..247487 | TCONS_00054950-exon-scaffold_247-1510915933:247267..247487 | Clytia hemisphaerica | exon |
| TCONS_00054950-exon-scaffold_247-1575043694:247267..247487 | TCONS_00054950-exon-scaffold_247-1575043694:247267..247487 | Clytia hemisphaerica | exon |
| TCONS_00054950-exon-scaffold_247-1491911889:247702..247749 | TCONS_00054950-exon-scaffold_247-1491911889:247702..247749 | Clytia hemisphaerica | exon |
| TCONS_00054950-exon-scaffold_247-1510915933:247702..247749 | TCONS_00054950-exon-scaffold_247-1510915933:247702..247749 | Clytia hemisphaerica | exon |
| TCONS_00054950-exon-scaffold_247-1575043694:247702..247749 | TCONS_00054950-exon-scaffold_247-1575043694:247702..247749 | Clytia hemisphaerica | exon |
| TCONS_00054950-exon-scaffold_247-1491911889:248047..249568 | TCONS_00054950-exon-scaffold_247-1491911889:248047..249568 | Clytia hemisphaerica | exon |
| TCONS_00054950-exon-scaffold_247-1510915933:248047..249568 | TCONS_00054950-exon-scaffold_247-1510915933:248047..249568 | Clytia hemisphaerica | exon |
| TCONS_00054950-exon-scaffold_247-1575043694:248047..249568 | TCONS_00054950-exon-scaffold_247-1575043694:248047..249568 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_247 | supercontig | scaffold_247:247267..249568 + |
Blast
The following BLAST results are available for this feature:
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