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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054951 ID=TCONS_00054951|Name=TCONS_00054951|organism=Clytia hemisphaerica|type=transcript|length=1911bp
GAGGTTTTTTACGTGGCCGAAAGTAAAATGATTATTGATGCGTAGCAGTC
CGATACAACATTATGAAGTAAGAGGACAACCCGGAGCAAAACGGAGAAAA
GTGCTTATCTGTTAATTGTTGAAACGGGTAATTGTATTAAAAGATTCTCA
GACCCGGTGTACATTTTCTAAGCATTGAAACAATGGGAAAGTACCGTATG
ATTGCTATTAATAAGATGGGGCAGATGGCAATTAGGGCAAGACCAAACTG
TAGACTTGTAATTAACGAAGGTTAAAAGAAAGCAAGAAGCAAAgttcaaa
aaaaatgaattatcttactatttttttgttttctcttgtaGTTGTCGATG
GGTTGAGCATTGTCCGGTCAGGATCTAAAGATACAAAAGATCTGACTGCA
TTGTTGAAAGTCCAGCGTGACAGGGACAACGTCACTTGTCAAAATTTGTA
CAAGGTCTACTGGCTAGTCAAGAAAGATCAGTTCAGTGTTGCATCACCCA
AACAAAACATTAACTACGTCATTCAAGCCTGCAAACCAGATATCACAAAC
TTATTCTGCGCGGATGAAAGTAACGATCAAATTTGGACAGCTGTCcgatt
ttgtgacgtcattccGAATTCTGACTTCATTGTGTGTAAAATTTTTCCGA
AAGGATTCGAATCGTACAACCATTTCGCGAATTGGACGATGGAATCTTTT
ATCTACAAAGTTCGCGGAGAGGATGCTGGGAAATCTGTACAAATGAATAC
AAAAAGTTTGGTCATCACACCTTTCTACAGATGTCCGAGAATCAAACTTG
TCCGGCCAAGCCATCAATTATTCAACTAAAAGCGAACAGAATCTTACAGA
CGATCAAAGGAGACTCCTGATCCTCAAAATTctttaaaagaataaatttt
AATCCCATATCGCAATTTTTTTCCACAGTCAAAACAAGATTGGGAGTTTT
CCATTATTGAAGGTCTGTAAGACGCATGAACTGGACCCGACTTAATGAAT
ATGAAACAACCAAAAGATTCTTGACGATAAATCAAGAGcaacattttatt
ttatattcgTATCATTACACTTAGTTTTTTAATCCTGCTAAGAGACCAAC
TTCATTGTATCCCAAAAAAAAGGGCAAATTTTAAATGAAGTAAAATCCGC
ATAGTTTATGTAGaattttatgacttgtataactgatattgggctcttcc
agaaaaaatccgttcatggggggtggaggatgaattgtccaggggtattt
aaaaaataccaaaaaaatgcaatgtccagggggtaattttttgtgtccac
ggggttgatttgatgtttgtccaggggtataacccgtgtccaaggggtta
aaaatcaaaatatccaggggtaattcatgaaaaaaataatatatcctcca
ccccccatgaacggattttttctggaagagcccatttcaaGCTCAAAAAC
ATTCAATCATTTTGGGACTATCTATTGATTAAACAGAGTAttgttatttt
atttcaatcattCTAAGCCAAGTTCTCAGATAACgagttttgaagatttt
acttTATGTAAAAGtttgtccgctttttttgggacacactgtatctAACA
TCGTAGGCAGGAAAATGCTTAAGACCACTTATAACGAATTCTTTCTCAAA
GTTTTCTCAAAGACAATTTAAATCAGCCTTGGATTGAGACAATCATGCAT
ATCTTTTTTGCATTGCCTTTTCATAAGTTTATAGCTTTGAGGTATTTTAT
TGGGCTATTTcaattaaatattttatttgctGTTATATAACCTTAATata
tatttcattatttttaaacCGTATGTCAAcccaaaatttttataattatt
cTTTACTTTAAGCACATGTATTTACTCATTTCAATAAATTATAACCGACT
TTGCAATTTCA Run BLAST on NCBI transcript from alignment at scaffold_247:247361..249568+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054951 ID=TCONS_00054951|Name=TCONS_00054951|organism=Clytia hemisphaerica|type=transcript|length=2208bp|location=Sequence derived from alignment at scaffold_247:247361..249568+ (Clytia hemisphaerica)
GAGGTTTTTTACGTGGCCGAAAGTAAAATGATTATTGATGCGTAGCAGTC
CGATACAACATTATGAAGTAAGAGGACAACCCGGAGCAAAACGGAGAAAA
GTGCTTATCTGTTAATTGTTGAAACGGGTAATTGTATTAAAAGATTCTCA
GACCCGGTGTACATTTTCTAAGCATTGAAACAATGGGAAAGTACCGTATG
ATTGCTATTAATAAGATGGGGCAGATGGCAATTAGGGCAAGACCAAACTG
TAGACTTGTAATTAACGAAGGTTAAAAGAAAGCAAGAAGCAAAgttcaaa
aaaaatgaattatcttactatttttttgttttctcttgtaGTTGTCGATG
GGTTGAGCATTGTCCGGTCAGGATCTAAAGATACAAAAGGTAACTCAAAC
GGTTGTGAATTATACAGGGCTTCCAATTCTTATTAGCTATTCAATGATCA
CATTgcaacatttgttttgatttggaatTAACATAAGTTACTGGTCCTCT
CTCTTTTTAAAATAAACAgtatatcatattttcaagacaaGACTTGTCAA
AATAAATAAGAGTGTATTAAGAGTGTTGCTGATCCGTTGTTTAAGAAAGG
TTTGTATAAATTAAAAACGGTTGCTGAAAATGTAAAATTGTTGTGCATGG
ATAGTAGGTAATAATATTTTCATTATGTATTTTTAGATCTGACTGCATTG
TTGAAAGTCCAGCGTGACAGGGACAACGTCACTTGTCAAAATTTGTACAA
GGTCTACTGGCTAGTCAAGAAAGATCAGTTCAGTGTTGCATCACCCAAAC
AAAACATTAACTACGTCATTCAAGCCTGCAAACCAGATATCACAAACTTA
TTCTGCGCGGATGAAAGTAACGATCAAATTTGGACAGCTGTCcgattttg
tgacgtcattccGAATTCTGACTTCATTGTGTGTAAAATTTTTCCGAAAG
GATTCGAATCGTACAACCATTTCGCGAATTGGACGATGGAATCTTTTATC
TACAAAGTTCGCGGAGAGGATGCTGGGAAATCTGTACAAATGAATACAAA
AAGTTTGGTCATCACACCTTTCTACAGATGTCCGAGAATCAAACTTGTCC
GGCCAAGCCATCAATTATTCAACTAAAAGCGAACAGAATCTTACAGACGA
TCAAAGGAGACTCCTGATCCTCAAAATTctttaaaagaataaattttAAT
CCCATATCGCAATTTTTTTCCACAGTCAAAACAAGATTGGGAGTTTTCCA
TTATTGAAGGTCTGTAAGACGCATGAACTGGACCCGACTTAATGAATATG
AAACAACCAAAAGATTCTTGACGATAAATCAAGAGcaacattttatttta
tattcgTATCATTACACTTAGTTTTTTAATCCTGCTAAGAGACCAACTTC
ATTGTATCCCAAAAAAAAGGGCAAATTTTAAATGAAGTAAAATCCGCATA
GTTTATGTAGaattttatgacttgtataactgatattgggctcttccaga
aaaaatccgttcatggggggtggaggatgaattgtccaggggtatttaaa
aaataccaaaaaaatgcaatgtccagggggtaattttttgtgtccacggg
gttgatttgatgtttgtccaggggtataacccgtgtccaaggggttaaaa
atcaaaatatccaggggtaattcatgaaaaaaataatatatcctccaccc
cccatgaacggattttttctggaagagcccatttcaaGCTCAAAAACATT
CAATCATTTTGGGACTATCTATTGATTAAACAGAGTAttgttattttatt
tcaatcattCTAAGCCAAGTTCTCAGATAACgagttttgaagattttact
tTATGTAAAAGtttgtccgctttttttgggacacactgtatctAACATCG
TAGGCAGGAAAATGCTTAAGACCACTTATAACGAATTCTTTCTCAAAGTT
TTCTCAAAGACAATTTAAATCAGCCTTGGATTGAGACAATCATGCATATC
TTTTTTGCATTGCCTTTTCATAAGTTTATAGCTTTGAGGTATTTTATTGG
GCTATTTcaattaaatattttatttgctGTTATATAACCTTAATatatat
ttcattatttttaaacCGTATGTCAAcccaaaatttttataattattcTT
TACTTTAAGCACATGTATTTACTCATTTCAATAAATTATAACCGACTTTG
CAATTTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054951-exon-scaffold_247-1491911889:247361..247749 | TCONS_00054951-exon-scaffold_247-1491911889:247361..247749 | Clytia hemisphaerica | exon |
| TCONS_00054951-exon-scaffold_247-1510915933:247361..247749 | TCONS_00054951-exon-scaffold_247-1510915933:247361..247749 | Clytia hemisphaerica | exon |
| TCONS_00054951-exon-scaffold_247-1575043694:247361..247749 | TCONS_00054951-exon-scaffold_247-1575043694:247361..247749 | Clytia hemisphaerica | exon |
| TCONS_00054951-exon-scaffold_247-1491911889:248047..249568 | TCONS_00054951-exon-scaffold_247-1491911889:248047..249568 | Clytia hemisphaerica | exon |
| TCONS_00054951-exon-scaffold_247-1510915933:248047..249568 | TCONS_00054951-exon-scaffold_247-1510915933:248047..249568 | Clytia hemisphaerica | exon |
| TCONS_00054951-exon-scaffold_247-1575043694:248047..249568 | TCONS_00054951-exon-scaffold_247-1575043694:248047..249568 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_247 | supercontig | scaffold_247:247361..249568 + |
Blast
The following BLAST results are available for this feature:
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