TCONS_00054954 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00054954
Unique Name	TCONS_00054954
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1978

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_247:330200..341302+

transcript sequence

>TCONS_00054954 ID=TCONS_00054954|Name=TCONS_00054954|organism=Clytia hemisphaerica|type=transcript|length=1978bp
gaaacgctttctcgtgtctccaccccatttttcattcaataacatttgtg
cttctctcacttttgtcccagggacaaaatcagcgtgtcttttgggtatt
tccctcactttttgttccataaaacaaaaaaagaaaccatgggacacgca
ctttttttcttgtgttggtgggatggagcatgttgcgttgtaccaacgca
aaaaaaacttctcgtgtccccaagtcTTTAAGGTAAAAACACGATTCTTT
TACACTTGGGTAAGAATAACCTTCTCGGATTTTTGCATGACCTTGCTTTA
GGGCGTGTCTTGatactgtttctttattttagaGCTTTTGTACTGTTTGA
TTAACTGGACATAAATGTGTGGTAATTAAATCAAAGGCTTTTTACAAATT
ATTTATAATTACGGAAATACTAATTTGCCAATGTAACGCGATTTAATCTA
AGCGAATAATTCCTGCGATGACTTTACAGTATGTCCAATGATGTAAATAT
CACTACACCCGTTTCCATCCATTTTTTTCGTGCCGATTTTTTGTCGCTGA
TCGCCGAGAAAAGTCTGAGAAAAGTTTAACCGAAGTTGTTTAATTCATTG
CATACACTCATCATCACACATGCTTGCTTCCACCCTCCCTCATCGTCAGC
ACAAAAAGCGCCTGACGTCGAAACAAGACAGAGTCGGAATTTCCCAtaag
aagaataaaaaagttcGAATTTCAAGCCAACAACGACAGGagCAACTAAA
TCAAGATGGCAGCCAGTAGGAATACAGCAGCAGCCAACACGACAGAGAGT
TCAGTTGACCCTGATTCCACTGCAGAAACGTCTCGAGGTATCTCTTCATC
CACCCTGGGGTCATCTACTTCACAAGACAACTCTTCCATGGCAAGATCAA
CCTCCACATCTGCACCCTTCAAACGCTCGAAACCTCCAGCCAAAACTGCC
GGCAAGAAGAAAGTTTCAACTGCTGTTAAAAGaattcAACGTGAATTGAC
AGACATTACTCTCGACCCTCCGCCTAATTGCAGTGCTGGACCAAAAGGCG
ACAACTTGTATGATTGGGTGGGTACCATCCTCGGACCACAAGGAACCGTC
TATCAAGGAGGCGTGTTCTTCCTGGAGATTACTTTCCCTTCAGACTATCC
CTTTAAACCGCCCAAAGTGATCTTCAGAACGCGCATTTATCACTGCAACA
TCAACTCGCAGGGTCAAATATGTTTGGACATCTTGAAAGACAATTGGAGT
CCGGCATTCACCGTCTCCAAAGTACTTCTCTCGGTGACGGCACTTTTGAC
CGATTGTAACCCAGctgATCCATTGGTTGGAAACATCGCACAACAATTTC
TTTCAAACCGTGAAGAGCACGACACGATCGCCCGTGAGTGGACCCGAAGA
TACGCTACCTAAATGCTTCCCAGCAAAATCTGTTTCTCAAATCATGTAAA
TATCTCTGTTAAACAGAAAGTGATGGAGTCGAGTTGGAAAGGGAGAGAAG
CTTAACTGCTGTGAAGTGATGTTATCCAATAAGAGTTGTTTGAACTGACG
AGGATGTGTTCTGGAAGGTTCAGCTTAGATGACGATAATGATGTTGTTTT
CTCTCGACTCTGGCGGTAAATGAATTGACATCAATGTAAGTGTTAATGAC
AGTCACCAAGCTCCTACAAAGCaaagattgaaaaagaattgaGAGTATCA
GTCGAAATATGAACAAACACTCATTAAAAACTTGATCGCAGTTTATAGAA
GTATGCATGCACGCTTTTCGCTTTCTACTCGGGGAAgatatgtttcaatt
ttcatgccTTCCGGCTGAGTGGAATACCATCACTTGTACCATCACAGTTG
Aagtaatttcaagaattttaatcctaattgcccccgcaaggagcgcagcg
actgaggaggcattcatagcttcacgcaatatattgaactggaatctcga
ttttttgcgaattgtttttgtttttgNN

Run BLAST on NCBI

transcript from alignment at scaffold_247:330200..341302+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00054954 ID=TCONS_00054954|Name=TCONS_00054954|organism=Clytia hemisphaerica|type=transcript|length=11103bp|location=Sequence derived from alignment at scaffold_247:330200..341302+ (Clytia hemisphaerica)
gaaacgctttctcgtgtctccaccccatttttcattcaataacatttgtg
cttctctcacttttgtcccagggacaaaatcagcgtgtcttttgggtatt
tccctcactttttgttccataaaacaaaaaaagaaaccatgggacacgca
ctttttttcttgtgttggtgggatggagcatgttgcgttgtaccaacgca
aaaaaaacttctcgtgtccccaagtcTTTAAGGTAAAAACACGATTCTTT
TACACTTGGGTAAGAATAACCTTCTCGGATTTTTGCATGACCTTGCTTTA
GGGCGTGTCTTGatactgtttctttattttagaGCTTTTGTACTGTTTGA
TTAACTGGACATAAATGTGTGGTAATTAAATCAAAGGCTTTTTACAAATT
ATTTATAATTACGGAAATACTAATTTGCCAATGTAACGCGATTTAATCTA
AGCGAATAATTCCTGCGATGACTTTACAGTATGTCCAATGATGTAAATAT
CACTACACCCGTTTCCATCCATTTTTTTCGTGCCGATTTTTTGTCGCTGA
TCGCCGAGAAAAGTCTGAGAAAAGTTTAACCGAAGGTAATGTTTATTTAG
AAGCTTGTTAAATCTATACGTAAGCATGTTTGTAATTTAATATTGGATTT
ACGAGAGATAGTGTTTTATTTCACAATACGATCCTTCGTGGCCATGTTTG
TGATTTGTATTGGCAGCTTCTTAAAAACTGTCCTCTTAACTCGGCGTACT
TTTTCACCAAGAAACTGAGTGAATTATTCTTATAACGTTGATGTTATTAT
TTCCCTCTGTTTTCGTGTAAAGGATAATGGTATATGTATCATCAGGCTTT
GTTGTCATAGCAACATTAAATTGATATCAGATGATTTGTTAATAACCTTA
TAATTTGTCTTATTTGTTCTAGTTGTTTAATTCATTGCATACACTCATCA
TCACACATGCTTGCTTCCACCCTCCCTCATCGTCAGCACAAAAAGCGCCT
GACGTCGAAACAAGACAGAGTCGGAATTTCCCAtaagaagaataaaaaag
ttcGAATTTCAAGCCAACAACGACAGGGTAAGCAAGCTTTCAATTTTCTT
CGCTTTGTAGTTTAACATGCTTGAATGACTAAAgttgagagagagagagg
acACTGAAAGATTTAACTAACATTACCCCGTAACagttatcgtattatca
taacACCTTTATTACTGTATTATACGTACCACTTGTATGACTATTTACCA
TAATCATTTTAACGTCTAGTGCCGTATActcgtttttataagaaactcaT
TTAATCATTCTAAATTNTTAActtaagaataccgtaagaatatttttgga
cgattttcgccaaaaagttaagaatacccATGATGAAATgcaaaaacacc
attcttatagaaaaaagaaGCGTGTAACCAGTACAGTGTACCATCTTCTT
AGACTTTTCACATCGAGGTCACAGAACGTGTTTCATCTTTCAATAAACAA
GNAATGATAAGAATAAAACATAGATCTTGGCCATTtcgtatttgagaaaa
aaatgaacagaGAGACAGAATTTACACTCTAACAATACTATGGCTGTTGT
CTTAAACTTTCTCTCCTGTCAGAAAATCCACacccttttcaataaaataa
cgAGCACTTTATGAAAAGGGTCTTAAAAGCATTCTAacctataaaaaaaa
ttagtgcATATATTACTAAATAATATGCTATTATAAGATCCTAATCCAGT
AATACAAATTTTTGACACCTCTTtttcagtgacccggtgaggATTATTTG
CCAGTGATGATAGATAAAATAGGAATTTACATGCTGGTTGGGACACTATA
CAATCCTTTTTTggatggctggggatttcaaagttttattaTTGTGTATT
TCCCGGTGGGAAGGGGAGGTTACTGTAGTTTTCCAATAGGAATGGGGTTT
CAGGGCACCTTTCCATCGGAAACGGTTTTTGGTCATTTGGGCGGGGTTCC
TTTCGGTTTTGAGACAGTGGATATATTTTCAACCCTAAGAATTAAGCAAA
TATCATTATAAGGAAAAGAggatttctaataaaaaaggaCGGTGACTAAA
AAGTCATCTCACATTCTGATCACTCTAACATTTCAGGCGCTCAAATCTCA
TTCTGGTGGTATAGAGCTGTTGTTTATTTAGAATCGACTTTATTAGACTA
TTAAAATTGTAtccaaaaacctttttttatttaatcatATAAGTTGGAGT
CGTTGGACAACcagaaaatcgataaaaatacCTTGGAGggtaatacaatt
tttttataagagcatccaaaatttttgaagtctacggatgttcttaactt
ttttagttttaagtctaaaaatgttcttaacatgttcttattttgaccat
tttttaagtatttttgaccattttcctaagaaaaagggtgtttttgagtc
cacaaagccttaaaatgttcttaacttgttcttaacattttagccattGA
AGCCTATGTTCTTATATAGTTTGTTCTTATGCTTCGATGGCCAAAATGTT
AAGAACAAGTTAAGAACGTTTTAAGGTCTAACGTCTTTACAGACTCTTTC
TTAAGAAAATGGATAAAAATGCTCACGAAATGGTGAAAATAAGAACATGT
TAAGAATATTTTTAGGCTTAAAGCTCAAAAAGTTAAGAACATCCTAAGGC
TTCAAAAAGTTTGGATGTTCTTAACGTGTACACGCTTTTTTTTTATAAGA
ATACACTTTATAAGAATGTCCATGATGAAAATGGCCAAAAAATTAAGAAT
ATAGTAAGAATATCACCATCATAGAATTTAGCCACTGAACCTAAGAATGC
CATTTTAAATGCATTTTAACCTGTAGATTGCCAATTTCGATCTTAACTTA
AGAATACCGTAAGAATATTTTTGGACGATTTTCGCCCATGATGAAATGCA
AAAACACCATTCTTATAAAAAAAAAAGCGTGTAACCAGTACAGTGTACCA
TCTTCTTAGACTTTTCACATCGAGGTCACAAAACGTGTTTCATCTTTCAA
TAAACAACCTTCAATTTTTCACGAGCTTCTGATTTACGATATGGTTGCTG
TTATTTCACATTTTTTTAATCTCGACAACAATAAGGTTTATTCAATCGTT
CTTTTATGACGAAACAAGATAGCAGACCTCTATGTTTTAAGAGCAGACCG
AAAGAAAGAGGGAGACCTCTCAGAAATGAGGAAGGCAGACAAGCTAGGCA
GGAGGAGCTCTCACTCTCAGTTACTCTAGTTAAGTAGGAAACAGGGGTGG
ATACGACAGGCTCCTTCTaagagatttttctttttctttagagCAACTAA
ATCAAGATGGCAGCCAGTAGGAATACAGCAGCAGCCAACACGACAGAGAG
TTCAGTTGACCCTGATTCCACTGCAGAAACGTCTCGAGGTATCTCTTCAT
CCACCCTGGGGTCATCTACTTCACAAGACAACTCTTCCATGGCAAGATCA
ACCTCCACATCTGCACCCTTCAAACGCTCGAAACCTCCAGCCAAAACTGC
CGGCAAGAAGAAAGTTTCAACTGCTGTTAAAAGGTAAGGGGTTTCCCCCT
ACTGACCCTACATTTTCTTTATGGGATGTTTTAAGTTGGCTTCTTTCTCT
ACTTGGAATATTATAACTAAGGGTTTGGCATAGGAGAGAAATCTTTTTGG
GTTGGGGTCGCTTAAATGAAAATAGATTATTGgaattaaagaaagttgag
gtattatataaatttcataaactaattatttcatctattttcAGTTCGTA
ACGTTATAGTTTTCATTAAGTGAAATTTAGTGCTTTAGACTTTGTTACGA
TTTTCAAAATTGCGATTCTTTTAAAAGAGTATATTGTATTTGAATACTTT
ACACCagcacccctgtatcagtgacctGTTGGATTTCTAAGTCTTCTTTT
AATTGGACAGAATTTANCAATCGTTCTTTTATGACGAAACAAGATAGCAG
ACCTCTATGTTTTAAGAGCAGACCGAAAGAAAGAGGGAGACCTCTCAGAA
ATGAGGAAGGCAGACAAGCTAGGCAGGAGGAGCTCTCACTCTCAGTTACT
CTAGTTAAGTAGGAAACAGGGGTGGATACGACAGGCTCCTTCTaagagat
ttttctttttctttagagCAACTAAATCAAGATGGCAGCCAGTAGGAATA
CAGCAGCAGCCAACACGACAGAGAGTTCAGTTGACCCTGATTCCACTGCA
GAAACGTCTCGAGGTATCTCTTCATCCACCCTGGGGTCATCTACTTCACA
AGACAACTCTTCCATGGCAAGATCAACCTCCACATCTGCACCCTTCAAAC
GCTCGAAACCTCCAGCCAAAACTGCCGGCAAGAAGAAAGTTTCAACTGCT
GTTAAAAGGTAAGGGGTTTCCCCCTACTGACCCTACATTTTCTTTATGGG
ATGTTTTAAGTTGGCTTCTTTCTCTACTTGGAATATTATAACTAAGGGTT
TGGCATAGGAGAGAAATCTTTTTGGGTTGGGGTCGCTTAAATGAAAATAG
ATTATTGgaattaaagaaagttgaggtattatataaatttcataaactaa
ttatttcatctattttcAGTTCGTAACGTTATAGTTTTCATTAAGTGAAA
TTTAGTGCTTTAGACTTTGTTACGATTTTCAAAATTGCGATTCTTTTAAA
AGAGTATATTGTATTTGAATACTTTACACCagcacccctgtatcagtgac
ctGTTGAATTTCTAAGTCTTCTTTTAATTGGACAGAATTTAAGATTTTCT
CGTTCACAGATAAAAACCCAGTGAGTAATTCATAAATTTTCTTGTAGCTG
CTCTTTTGCGAACCAAAaaagcattttcaaagtttaagaAAATTTCAGGG
GATTCGCTTCTCAAGCTAAATGATTTTTAGCCGATTTTTCCATTTGTGGG
GGCCCCACCGGTTCTCTGTGATACAGGGATGCATTACAGTGCTAGGGAAA
TAAGTTTTGTTCAAAGGTAACCTTTTTAAAGGAAGGAGTCCTTGATATAA
AACTGtcaagataaaaatatttagttttacttctttgtttctattttttc
ttttttatagaaaattattCCCCCTTTTTTCACTTCAACATGAATGAGAA
ACGCCCTTCCTCTCTTCAACCCCCCTCCCTAGAGcagagaaactttttct
ttgaaaatctcTAAAATTGAAAGCAAGATTTCCTGGTAAGAAATTTTCAG
TACATGAGGCGGACAAAGACAATATCTGCCATTTTGTTCTCAGACGAAAA
AATGTCGTAAACCCGGGGCAATTAGATATTGAGATTATTATTTGTTTTCG
AAACCCGAGGTTAGTTTTGCAGCTGCGAATCATTTTTCCCTTCTAGAAAT
TTCTCTTCTAACTTTCGTTGCATTAGCTTTTTGCATTTAATCACACAAAA
TCATTAGACAACTTGCCAGGTGAAactaatttttgataaatttcttcACC
TTTCATCAAAATAAAGTTCATAAAAACATGGCTTTCTAAAAAAAATCCGA
CATTCGACTatcaacactttttttaatgtttttatgtgACGTCATTCATT
TACTTAACAACCGCTGAccgttttttataatttttcacaTTGATATTATA
AGAACTAACCCTTGGATATCTTATAAGCCAGTTGAAGACTTACATATCCA
TTATATAATGTCTTAGTTTTCGGCTGCATTgtcacatacacgttttttat
aaaaaatgaaaaacttttgaggcctttgaatgttcttaatttttaaaacc
taaaaatgttcttaaaatgttcttattttcaccattttgtgagtaatttt
ATCTATTTTCCTGAGAAGttcggtgttttagagtccacaaagttCGAAGC
TTTATAGTTTGttcatataaaattaaaaaaacatgtaagatGTAAGATTC
TTTTAAACTTCCATTACTAGTTATAATGAccttgttttaattttcttgcC
AGATTTCAGATTCTTTCCCTAGCATTGCGAATCTCGTTTTCCTAATGGAA
ATAAAACTATTCCTATGGGAGAAAAGAGCGCTGACcagggggcatagccc
cccccNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNcaccccccccccccccaatatgaaaatgc
ttcctacggcactgctgACTCAATAAAGATAAACTGTTACacgcttttct
ttttttataagaatggtgtaaatccatttcatcatggatattgttaactt
ttttgggaaaatcatcctagaatattcttacaccattcttaagttaggat
cctaattcagactagattaaacatttagtacatacgtctcaagcataaaa
tggcatttttgtgaaaggggtGAGCCTTAGCTACTTgagggtaattgaca
atttataattaattgaaaatgctctaaaaatggcattcttagcttgaatA
GCAAAATTTCTTGCTGGacatattcttagcatattcttaattttttggcc
attttcatcatggacattcttataaagtgtattcttattaaaaaaagcgt
gtagtctgaatcacagactCTTCGCAGACCTCTTTAGAAATACTTGCCAT
AATAAGAAAGTGTTTTCGCTAAAGGATGAACAGAGGCCTAAATAACTGCG
TGCTATTTATTGTGTTAAACCCTAGTGGTTGTGTACCCCTAGAAATGGAA
GCGTCCTACTGGTTGAAAAGTATATCACATGAACTTTCATGGGAAAGTGT
TCATGCGACTTTATCAGCTAAAAGCGACATATGGGCTGTTctagaaaaaa
tccgttcatgggggatggaggatgaattgtccaggggtattgaaaaaata
ccaaagaattgcaatgtccagggggtaaattccaatgtccaggggtaatt
ttttgtgtccacggggttgatttgatgtttgtccaggggtataacccgtg
tccagggggttaaaaatccaaatgtcccggggtaattcatgaaaaaaata
atatatcctccaccccccatgaacggattttttctggaagagcccattgt
tcTACTGGTAATATATGGAaggcgttttgaattttttcctaACACTTTGA
GCCACGAtgttttcaaaaaccttttgttctccaacTTATACCGTTTATGT
ATTTTGATCACCCTCCTACTTATACATTGCCTTGGTCTAATTGGTGAGAA
AGTTTTTAGTTCTTatatttcaatgattttgtGTGTTTAGCTGTGAGTTA
CAGTGTTCTTTTCTTCAGATATTCTCCGCCAACCCCTCCGCCCAAATGCC
ACCCTCTGCATGATTGTCTTCAATGTGATGAATGTAGAGCAAATGTGCTT
TTTCTTAGCTTTGAACAATGTAACTGACTGATTTCGGTATCTGTTTCATG
TTTGTATGCCTACAAAGCCTATTGCCTGAAAAGTTGATTTATACCATTCT
GCATTCATGCATGACCCGCGCCATGATCTCCAAATTAAAAGGGCCAATGT
ACTTGATTTTGGTTTGCGGCAAATGGAGAAATTCCGATTTCGCATCCATA
AGATGCATCCAAATAACCCTATTTGTGGAGAATGAGTTTATTTTCGAACT
CTGTATATCATGTTATTtaaatgcttttctttttttgcaagaaaGTGGTA
GCGGACCTTCGATTAAAAGAAAGGTATGGGACAGGCAATAGTGAGGGCGT
AGTAAAAATAAGTAGCAAGAAGTTTTGTGTTTAATTTGTGGCCAGACACA
AGAACGATGACGTACAATGCGACAACTTCAACTTTATCACGAGCTTCTGA
ATTCGGGCAATGAATAAATCATGAAATGTGCTGTTATGTTATCATTTTTT
ATtaacactcttttttataagaatttactttCAGACCGCTTTATATTATC
CCTTCTGTGTTTGTTACTTTCTATTACATATTGGGCTTCTTTTGTATGTT
TTAAAGTTCCTACAGTTCCAAACTAGCTCAGAAGCCTGGGTGCAAATATC
TTGCACGAACGTCAAACTTTCTCTGGTCATTTTGTAAACCAAATATATTC
TTAGCTCAAAAGTAGAGTATGTCGTTCTGACATCTGAGAGGATTATTTCT
CCTCACAAAAAAACCGCTGACCGGTTCCCAATGAAACCATacataatgaa
atgaaaatcgtCAGATAAAATAATGGATGTCTAATTATTTATGAAAATCA
AGCATACTTAAATACATTAAATAAACAAATTACATTCTGTTCTGGACTTC
CCTAACTTTGTAATGTGTTACCGAACCCTGTTGTCTCCCTGTTGCCAGCA
CTGGAATAGGGGTGGTAAGTGTTCAGGGTCAGGGGGCCTTAGGGTCTTAG
ACTTTGGGGCTGGTCGTATAATGTAGGCAGACACTAATTTATGATAATAT
TTTAGCTAATTAACTTGAATTGCCTGGGATATGAAGCTTAAAGACATTAA
ACACAAAAGAGAGAGTTTAAGACTTTTTTGTTAGAACCAGTATATGTTTG
ACGAGActcagctgttcttattttttaggaCAAAACCGAGGTATTTCCGG
TTTGATATTTTTACTAATTGACTCTTAATTTGCTTAACAACTTTAGGCTA
atgattgttcttaaattgttcttatgaaattattCTTAGAAAAGAAAGAA
TGCATTTTGAAAACCCTGGAATAACtgtatcaaaaattatttcttttttt
tatttcagaattcAACGTGAATTGACAGACATTACTCTCGACCCTCCGCC
TAATTGCAGGTACGTAATCATCATTATCTCCCTATAATTATCTCCCTTGA
CTTCAAACGCATTCCGCATTTAGAAATACTTAATTATTTGCCATATTTTG
GTGGTTTTCTTCTGATACAAACGTTTTTATAACCTGTTTATAACTACACC
CTGGTCTCGCTGAATTTAGTAAAGGTTTGATATATATGATGTTAATTTAC
TGCATATCATGACTTAAACTACTGAAAGTAAAATACGAAAACAcatactt
tttaattttgaaccACGTTTGTTTCAGTGCTGGACCAAAAGGCGACAACT
TGTATGATTGGGTGGGTACCATCCTCGGACCACAAGGAACCGTCTATCAA
GGAGGCGTGTTCTTCCTGGAGATTACTTTCCCTTCAGACTATCCCTTTAA
ACCGCCCAAAGTGATCTTCAGAACGCGCATTTATCACTGCAACATCAACT
CGCAGGTAAGGACTGTCTTTCACTCTTTCCCTCCCTGTTGAAGGTGGCTG
GAGGGTGTGTACCCAGGATCCGTGCTCGAATTTGGGCTATTTGTATCTCT
CCAATTTTAATTTGGTTTTTTATTTGTGTTTCGTAAATATTTGTTGATAC
ttcttttttaataaatcaGATTCCTCCCATAGGGTGGTAGTGTTAGTGGC
ACAGTAGATTGCATAGTAGCTTGCTTCAAATCTCTTCTCAAAAAGAAGTT
TCATAATAATTGTGGTCAATTCGCAATTCTGTTTTTGGTTAACAAGAAAT
AGTTTTATACCTCTCCGAAAGCcgctattttttcaagaaatttggTAGTT
TAAGTTAGCGTGGAATGTGCTAAACCACTTTCAATTGAGCTAAGATCTGA
TAATGTCTGTCTGGGCTTACACTTAGGCTTCTCTCGATaaaaatactgaa
gttgagcccagtgcagTGCGCACTTTTGACTATTCACTAAAGTCCGCTAC
ATTTCCGTCCGTAGTTGGCCACTAAATTGTATCTTTCCTTTTCTTAGGGT
CAAATATGTTTGGACATCTTGAAAGACAATTGGAGTCCGGCATTCACCGT
CTCCAAAGTACTTCTCTCGGTGACGGCACTTTTGACCGATTGTAACCCAG
GTAacaaacaaattttcaaattgactAATTTACTTTTCTTAATATCTGAA
TTCTTCATACAACTTACCACTACCTACGAGTCGCCATTGAGAGTTCTCGC
CACTCTCGAAACTGTATAACTAAAAAACGCCTacaattttattcaaattt
gtcaGGTTTTACTATTGTACTTTAAGGgatgaaaatatgaaatctaAAAA
TCTTGGGTAAAAACGAATGTAATGGCAATTAATCAACGAAAAGAAGTTTT
GTCTCGTGAAATGTCAAAAGTAGTTTCCTTTCTAAAGTACGCtgcttctt
caaatttttaaaaatacgagacgaattttcatttttcagctgATCCATTG
GTTGGAAACATCGCACAACAATTTCTTTCAAACCGTGAAGAGCACGACAC
GATCGCCCGTGAGTGGACCCGAAGATACGCTACCTAAATGCTTCCCAGCA
AAATCTGTTTCTCAAATCATGTAAATATCTCTGTTAAACAGAAAGTGATG
GAGTCGAGTTGGAAAGGGAGAGAAGCTTAACTGCTGTGAAGTGATGTTAT
CCAATAAGAGTTGTTTGAACTGACGAGGATGTGTTCTGGAAGGTTCAGCT
TAGATGACGATAATGATGTTGTTTTCTCTCGACTCTGGCGGTAAATGAAT
TGACATCAATGTAAGTGTTAATGACAGTCACCAAGCTCCTACAAAGCaaa
gattgaaaaagaattgaGAGTATCAGTCGAAATATGAACAAACACTCATT
AAAAACTTGATCGCAGTTTATAGAAGTATGCATGCACGCTTTTCGCTTTC
TACTCGGGGAAgatatgtttcaattttcatgccTTCCGGCTGAGTGGAAT
ACCATCACTTGTACCATCACAGTTGAagtaatttcaagaattttaatcct
aattgcccccgcaaggagcgcagcgactgaggaggcattcatagcttcac
gcaatatattgaactggaatctcgattttttgcgaattgtttttgttttt
gNN

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_034631	XLOC_034631	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_247	supercontig	scaffold_247:330200..341302 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.07347e-05	5.88226e-06	0.0123057	0.0396624	22.6794	19.7102	18.3543	19.287	3.61328	11.8024	6.20738	6.41734	2.22263	12.0758	17.6988	19.5321	12.6589	21.9915	17.3806	20.0081	6.07814	13.0076	10.2394	0.161008	8.59998	0.426384	0.059978	0.0781884	0.0509465	0.345484

Blast

[Close]

BLAST of TCONS_00054954 vs. Swiss-Prot (Human)
Match: UB2E3 (Ubiquitin-conjugating enzyme E2 E3 OS=Homo sapiens GN=UBE2E3 PE=1 SV=1)

HSP 1 Score: 271.166 bits (692), Expect = 8.894e-86
Identity = 126/172 (73.26%), Postives = 146/172 (84.88%), Query Frame = 3

Query:  894 RSTSTSAPFKRSKPPAKTAGKKKVSTAVKRIQRELTDITLDPPPNCSAGPKGDNLYDWVGTILGPQGTVYQGGVFFLEITFPSDYPFKPPKVIFRTRIYHCNINSQGQICLDILKDNWSPAFTVSKVLLSVTALLTDCNPADPLVGNIAQQFLSNREEHDTIAREWTRRYAT 1409
            R  S +   K +K  +KT  K  +ST+ KRIQ+EL +ITLDPPPNCSAGPKGDN+Y+W  TILGP G+VY+GGVFFL+ITF SDYPFKPPKV FRTRIYHCNINSQG ICLDILKDNWSPA T+SKVLLS+ +LLTDCNPADPLVG+IA Q+L+NR EHD IAR+WT+RYAT
Sbjct:   38 RKPSATQQKKNTKLSSKTTAK--LSTSAKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYLTNRAEHDRIARQWTKRYAT 207

The following BLAST results are available for this feature:

BLAST of TCONS_00054954 vs. Swiss-Prot (Human)

BLAST of TCONS_00054954 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
UB2E3	8.894e-86	73.26	Ubiquitin-conjugating enzyme E2 E3 OS=Homo sapiens...	[more]

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TCONS_00054954 (transcript) - C. hemisphaerica