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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054956 ID=TCONS_00054956|Name=TCONS_00054956|organism=Clytia hemisphaerica|type=transcript|length=1316bp
aatttttctatCTTTGTTGGAAAGTTTCTCGGCTACTCCATAGATCCGTC
GAACTTTAGAAAAAACCTGCTCAGCTTTCCTAATGATTTTGAAAGCGTTT
ATTGATTGTCGATTATGTGAGTATTTATACTAGAATTTCTCCAATgaagc
tgattggttgaaatagAAGGTGACATGGGATGTCAGAGAGTTCGAAAGAT
TAGTTCTAAATAGTTTCTTAATGAGGCTTTCTTCTACTATTTGTCAAAGA
CTGACAGTCCATTGACAAGCCAAAAGCACCAAATTATGCAATGTGTGAGA
AAGACCCTTAAAAAAACTCTCTTCGAGGGAGGGATGTTCTGAAGCACTCT
TAACACTTCATCAAATTTGCGATctacaaaaaaatcattgtatTTACTTC
AACTTTTTAGGGAACATAAAATAACAACAGTCACTCTTTGCTTTTTTTGG
TTgttggttttgttttcaaatatgGATCTCTTCGCCGCGTTTTTCATGTT
GGTTTGGGTGATGGAAGCAACCTTTGGTCGGCCGTCTACTGAAGATATTC
CCATGTATAACATTGGAGGGAAAAAGTATACCATTGCCACCATTGACCAA
TTTTCTAATGATTTCAAAGGGAAATGTAAATTACACAAAGCCCACATGGA
GTTTGGTGTTAATAGAGTTGTGGCGGACTTTTGTGGCGGAGGATGTGAGG
GCGTGGATGCCGATCGCTGCATCGCATGTCAACCAACCCCTAATGGGAAG
AAATCGAAAAATGTTACAATTATCGATAAGAAAGGAATTTCCAAACAAAA
GACAATCCAGGTGATCACGGCTTGTCATTGCGCAAAAGTGAAAGACTGTG
TTGCTAGCTAAAAAAACCCTATTCAAAGACTTGAAATCTTAATGATATGG
GGACGCCTTGGAGAATATTCCAACTCCATGTATTAAACAGCGAAAGTTTA
TTGGAGCTTTGTTGGAGGTTTTAAGTATGATGGAATGCCTCGCTTGATAA
CCCGCCCGATGACCCGCCTACGTTTGGGCATAACAAGAATTGTTACTAGC
AATGCCCTTTCAATAGTGCTTTCAATGATGAATGTGAAagaactttttct
ttgtaacaTATGTATTTCTTTTGgatttgtttttttaaacagTGTACAGA
TATTTGATAATTTcgtttttaagtaaaaataatttgtaaaaagagaaaaa
ttcgtTGGTTTGATACATCGGTGCGGATGTTTTATGTGTAGTGACATGTa
ctttccaaaaaataaaatgtaaattcGCGACCACAACAATAGACTACTGA
AGTTAGTAAAAAGGGC Run BLAST on NCBI transcript from alignment at scaffold_247:352241..353556+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054956 ID=TCONS_00054956|Name=TCONS_00054956|organism=Clytia hemisphaerica|type=transcript|length=1316bp|location=Sequence derived from alignment at scaffold_247:352241..353556+ (Clytia hemisphaerica)
aatttttctatCTTTGTTGGAAAGTTTCTCGGCTACTCCATAGATCCGTC
GAACTTTAGAAAAAACCTGCTCAGCTTTCCTAATGATTTTGAAAGCGTTT
ATTGATTGTCGATTATGTGAGTATTTATACTAGAATTTCTCCAATgaagc
tgattggttgaaatagAAGGTGACATGGGATGTCAGAGAGTTCGAAAGAT
TAGTTCTAAATAGTTTCTTAATGAGGCTTTCTTCTACTATTTGTCAAAGA
CTGACAGTCCATTGACAAGCCAAAAGCACCAAATTATGCAATGTGTGAGA
AAGACCCTTAAAAAAACTCTCTTCGAGGGAGGGATGTTCTGAAGCACTCT
TAACACTTCATCAAATTTGCGATctacaaaaaaatcattgtatTTACTTC
AACTTTTTAGGGAACATAAAATAACAACAGTCACTCTTTGCTTTTTTTGG
TTgttggttttgttttcaaatatgGATCTCTTCGCCGCGTTTTTCATGTT
GGTTTGGGTGATGGAAGCAACCTTTGGTCGGCCGTCTACTGAAGATATTC
CCATGTATAACATTGGAGGGAAAAAGTATACCATTGCCACCATTGACCAA
TTTTCTAATGATTTCAAAGGGAAATGTAAATTACACAAAGCCCACATGGA
GTTTGGTGTTAATAGAGTTGTGGCGGACTTTTGTGGCGGAGGATGTGAGG
GCGTGGATGCCGATCGCTGCATCGCATGTCAACCAACCCCTAATGGGAAG
AAATCGAAAAATGTTACAATTATCGATAAGAAAGGAATTTCCAAACAAAA
GACAATCCAGGTGATCACGGCTTGTCATTGCGCAAAAGTGAAAGACTGTG
TTGCTAGCTAAAAAAACCCTATTCAAAGACTTGAAATCTTAATGATATGG
GGACGCCTTGGAGAATATTCCAACTCCATGTATTAAACAGCGAAAGTTTA
TTGGAGCTTTGTTGGAGGTTTTAAGTATGATGGAATGCCTCGCTTGATAA
CCCGCCCGATGACCCGCCTACGTTTGGGCATAACAAGAATTGTTACTAGC
AATGCCCTTTCAATAGTGCTTTCAATGATGAATGTGAAagaactttttct
ttgtaacaTATGTATTTCTTTTGgatttgtttttttaaacagTGTACAGA
TATTTGATAATTTcgtttttaagtaaaaataatttgtaaaaagagaaaaa
ttcgtTGGTTTGATACATCGGTGCGGATGTTTTATGTGTAGTGACATGTa
ctttccaaaaaataaaatgtaaattcGCGACCACAACAATAGACTACTGA
AGTTAGTAAAAAGGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054956-exon-scaffold_247-1491911889:352241..353556 | TCONS_00054956-exon-scaffold_247-1491911889:352241..353556 | Clytia hemisphaerica | exon |
| TCONS_00054956-exon-scaffold_247-1510915933:352241..353556 | TCONS_00054956-exon-scaffold_247-1510915933:352241..353556 | Clytia hemisphaerica | exon |
| TCONS_00054956-exon-scaffold_247-1575043694:352241..353556 | TCONS_00054956-exon-scaffold_247-1575043694:352241..353556 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_247 | supercontig | scaffold_247:352241..353556 + |
Blast
The following BLAST results are available for this feature:
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