|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054959 ID=TCONS_00054959|Name=TCONS_00054959|organism=Clytia hemisphaerica|type=transcript|length=2241bpRun BLAST on NCBI protein sequence of TCONS_00054959-protein >TCONS_00054959-protein ID=TCONS_00054959-protein|Name=TCONS_00054959-protein|organism=Clytia hemisphaerica|type=polypeptide|length=726bp MGEEAPPKYYGYEENLMHGRYNSSMADYTKEYSKKLKYNTEDDDLISEFDRun BLAST on NCBI transcript from alignment at scaffold_247:2344..13785- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00054959 ID=TCONS_00054959|Name=TCONS_00054959|organism=Clytia hemisphaerica|type=transcript|length=11442bp|location=Sequence derived from alignment at scaffold_247:2344..13785- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_247:2344..13785- >TCONS_00054959 ID=TCONS_00054959|Name=TCONS_00054959|organism=Clytia hemisphaerica|type=CDS|length=41382bp|location=Sequence derived from alignment at scaffold_247:2344..13785- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00054959 vs. Swiss-Prot (Human)
Match: CLCN2 (Chloride channel protein 2 OS=Homo sapiens GN=CLCN2 PE=1 SV=2) HSP 1 Score: 602.438 bits (1552), Expect = 0.000e+0 Identity = 333/643 (51.79%), Postives = 440/643 (68.43%), Query Frame = 1
Query: 82 PKYYGYEENLMHGRYNSSMADYTKEYSKKLKYN-TEDDDLISEFDAEHSMRSYSQSRERSCWRLSYHWKK-IRPVLANDYSFLLILGILMALISFGLDYVIQKFQLAQILLYKMVAFSTVLQYILWVGFPLLLICFSVGFVHLVSPHAIGSGIPEMKVILRGTVLKRYLSFQTFIAKTVGLMTALGSGIPIGKEGPFVHVSSIVARMLSKFIKGFHGIYVNEARNVDMLACACALGVSSSFAAPIGGVLFAIEVTSTYFAVRNYWRGFFTAVCGAFMFRLLAVLDSTEETITALFKTTFNIDFPFDVQEFVAFGFIGLTCGLAGALFVYTHRKIVDFSQRHEASKFNRFLAKSRFIYPAMIVIVVSTLSFPKGFGMFMAGQLTPKEAVVQLFSNSTWTSN-------PSSDSEKYLLYWRTEYSNVYMTLVIFILVKFILTALCIALPIPAGAFFPVFVIGAAYGRLVGECMATWFPDGIRSGSGASSPVLPXXXXXXXXXXXXXXXTHTISTSVIVFELTGQITHILPVMVAVLIANAVVQPLQPSIYDSIIEIKKLPNIPDIKRTRH--YNVCAGDIMQTSILYTSMTGTYMAIRDLLKKSPHTSFPLVDKPEGMILLGSVRRPQLEWMLQRHLLNGQMRN 1977
P+ YE+ LM+GRY + + KE + +++ E A + Y +SR C S K + + D+ FL++LG+LMAL+S+ +DY I AQ + + + S +LQY+ WV +P++LI FS GF +++P A+GSGIPEMK ILRG VLK YL+ +TFIAK +GL ALGSG+P+GKEGPFVH++S+ A +LSKF+ F GIY NE+RN +MLA ACA+GV FAAPIGGVLF+IEVTST+FAVRNYWRGFF A AF+FR+LAV + EETITALFKT F +DFPFD+QE AF IG+ G GALFVY +RKIV ++ + NRFL + R ++PA++ +++STL+FP GFG FMAGQL+ KE +V LF N TW P S S+ W +NV++TLVIFIL+KF ++AL +P+P GAF PVFVIGAA+GRLVGE MA WFPDGI + S ++ ++PGGYAVVGAAA+AGAVTHT+ST+VIVFELTGQI HILPVM+AV++ANAV Q LQPS+YDSII IKKLP +P++ RH Y V DIM + + +++ T+ +R L ++ LV+ PE MILLGS+ R Q+ +L L + R
Sbjct: 12 PRALQYEQTLMYGRYTQDLGAFAKEEAARIRLGGPEPWKGPPSSRAAPELLEYGRSRCARCRVCSVRCHKFLVSRVGEDWIFLVLLGLLMALVSWVMDYAIAACLQAQQWMSRGLNTSILLQYLAWVTYPVVLITFSAGFTQILAPQAVGSGIPEMKTILRGVVLKEYLTLKTFIAKVIGLTCALGSGMPLGKEGPFVHIASMCAALLSKFLSLFGGIYENESRNTEMLAAACAVGVGCCFAAPIGGVLFSIEVTSTFFAVRNYWRGFFAATFSAFIFRVLAVWNRDEETITALFKTRFRLDFPFDLQELPAFAVIGIASGFGGALFVYLNRKIVQVMRKQKT--INRFLMRKRLLFPALVTLLISTLTFPPGFGQFMAGQLSQKETLVTLFDNRTWVRQGLVEELEPPSTSQA----WNPPRANVFLTLVIFILMKFWMSALATTIPVPCGAFMPVFVIGAAFGRLVGESMAAWFPDGIHTDS-STYRIVPGGYAVVGAAALAGAVTHTVSTAVIVFELTGQIAHILPVMIAVILANAVAQSLQPSLYDSIIRIKKLPYLPELGWGRHQQYRVRVEDIMVRDVPHVALSCTFRDLRLALHRTKGRMLALVESPESMILLGSIERSQVVALLGAQLSPARRRQ 647 The following BLAST results are available for this feature:
BLAST of TCONS_00054959 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.