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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054960 ID=TCONS_00054960|Name=TCONS_00054960|organism=Clytia hemisphaerica|type=transcript|length=1258bp
GAACAAGTGAGTCCCATGACGTGTTTGCTGATGACAAACTCGATGAGTCA
GATGAAGTATCAACTCTGCTCAATGTTCGTTTGCCTCGATTTTCCCGTCT
CATTATACGTTGTCTCGCTTTCCCGATATTATCCGTCTCACTTGACACTT
TGAAGGCTTTCTTTCGTTTCAGTTTGGATTTTCGTATAGCGCCTGCCGTT
TCGAGAGGTGATTTTAAGTTCGGTATAAGTCCTTTGTGTTTGGATAATGG
AGACAAATCATCATTTAATCGACATTGTTGACGTAAAGCTATATAGCTCT
TCATGTGTCGTGTTTGGTTGCGATTTCCGCTCTGTGTTGGAGAGACTTTG
CACTCTCTTGCGCTGTAGCGTTTTACACGGCAACCTGAAGCTGTAACTGT
TGTGTTCTCTAACATAAGTTTTCTTAAGGGTTTCATTGCACTAGAAGGTT
GGGTACTGGAGAACCTGTTTCTCTTATTTTTACTCTGTTTGTAGTTGTAA
ATTCTCTTTTTGTGGTCACTCTCTTCATCTGTAGAGACGTCAGTTGTAGA
TACGCCCCCAAGATCCAACCTCCGCCCATACTGgtaacctttttcttttg
tctcGAAGGAAACAAATAAAAGTTCTATATATGTTATACAACAAAACTCG
TTGCATTGAAAGCCTTGGAAACCTTCCCGGGTAAAGATATGGTCTCTAAA
ATATTTGCCAGTGTTTTTCAGTTTGATTTGATCATACGATACATCGACCT
CAGAATTACTACCGCAATAGCTGGCTTGTGAGGTTTGATAACCTGTGTCT
TCTGAAGATCCTGCATTGACCCGCAGTTGTGTATTCGGAGTAGTAGGATC
ATCACTTTCAATAaaaatgctgatgtcagccATTTTTTGATGATGTATAG
GTTGAAGACGTAATCTCTGCTGGGAATCCAACAATAAGTCGTCATAATTT
GTCTCGATGTCTGATACAATTTGATTAATCGAGTCCAGAGTAGAGTCTGT
ACACGCGTCTAAAGCGTCAAAGGAAATTCGCAAATAGCGGTTCGAGTTTG
TGAGAGTTTGACCCATGTAAGGAGTTTCAACGTTTTTGCTAACTGGGAAT
TCATTCATTGAGTGAGGAGAACTTATAGCGTCTGGTGAGAACAGAGGTCG
GTGGTCACTTTCATTTATGGTATTGTTTGGTGAGTGGCAAGACAAGGGTG
GCTTTAAATGGCGCCCGATAGGCTTTTGGTCTTGCGTGCTTTCCATTTGA
TCCTGATT Run BLAST on NCBI transcript from alignment at scaffold_247:69734..71048- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054960 ID=TCONS_00054960|Name=TCONS_00054960|organism=Clytia hemisphaerica|type=transcript|length=1315bp|location=Sequence derived from alignment at scaffold_247:69734..71048- (Clytia hemisphaerica)
GAACAAGTGAGTCCCATGACGTGTTTGCTGATGACAAACTCGATGAGTCA
GATGAAGTATCAACTCTGCTCAATGTTCGTTTGCCTCGATTTTCCCGTCT
CATTATACGTTGTCTCGCTTTCCCGATATTATCCGTCTCACTTGACACTT
TGAAGGCTTTCTTTCGTTTCAGTTTAGATTTTCGTATAGCACCTGCCGTT
TCGAGAGGTNAGGCTTTCTTTCGTTTCAGTTTGGATTTTCGTATAGCGCC
TGCCGTTTCGAGAGGTGATTTTAAGTTCGGTATAAGTCCTTTGTGTTTGG
ATAATGGAGACAAATCATCATTTAATCGACATTGTTGACGTAAAGCTATA
TAGCTCTTCATGTGTCGTGTTTGGTTGCGATTTCCGCTCTGTGTTGGAGA
GACTTTGCACTCTCTTGCGCTGTAGCGTTTTACACGGCAACCTGAAGCTG
TAACTGTTGTGTTCTCTAACATAAGTTTTCTTAAGGGTTTCATTGCACTA
GAAGGTTGGGTACTGGAGAACCTGTTTCTCTTATTTTTACTCTGTTTGTA
GTTGTAAATTCTCTTTTTGTGGTCACTCTCTTCATCTGTAGAGACGTCAG
TTGTAGATACGCCCCCAAGATCCAACCTCCGCCCATACTGGTAACCTTTT
TCTTTTGTCTCGAAGGAAACAAATAAAAGTTCTATATATGTTATACAACA
AAACTCGTTGCATTGAAAGCCTTGGAAACCTTCCCGGGTAAAGATATGGT
CTCTAAAATATTTGCCAGTGTTTTTCAGTTTGATTTGATCATACGATACA
TCGACCTCAGAATTACTACCGCAATAGCTGGCTTGTGAGGTTTGATAACC
TGTGTCTTCTGAAGATCCTGCATTGACCCGCAGTTGTGTATTCGGAGTAG
TAGGATCATCACTTTCAATAAAAATGCTGATGTCAGCCATTTTTTGATGA
TGTATAGGTTGAAGACGTAATCTCTGCTGGGAATCCAACAATAAGTCGTC
ATAATTTGTCTCGATGTCTGATACAATTTGATTAATCGAGTCCAGAGTAG
AGTCTGTACACGCGTCTAAAGCGTCAAAGGAAATTCGCAAATAGCGGTTC
GAGTTTGTGAGAGTTTGACCCATGTAAGGAGTTTCAACGTTTTTGCTAAC
TGGGAATTCATTCATTGAGTGAGGAGAACTTATAGCGTCTGGTGAGAACA
GAGGTCGGTGGTCACTTTCATTTATGGTATTGTTTGGTGAGTGGCAAGAC
AAGGGTGGCTTTAAATGGCGCCCGATAGGCTTTTGGTCTTGCGTGCTTTC
CATTTGATCCTGATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054960-exon-scaffold_247-1575043694:70894..71048 | TCONS_00054960-exon-scaffold_247-1575043694:70894..71048 | Clytia hemisphaerica | exon |
| TCONS_00054960-exon-scaffold_247-1575043694:69734..70836 | TCONS_00054960-exon-scaffold_247-1575043694:69734..70836 | Clytia hemisphaerica | exon |
| TCONS_00054960-exon-scaffold_247-1510915933:70894..71048 | TCONS_00054960-exon-scaffold_247-1510915933:70894..71048 | Clytia hemisphaerica | exon |
| TCONS_00054960-exon-scaffold_247-1510915933:69734..70836 | TCONS_00054960-exon-scaffold_247-1510915933:69734..70836 | Clytia hemisphaerica | exon |
| TCONS_00054960-exon-scaffold_247-1491911889:70894..71048 | TCONS_00054960-exon-scaffold_247-1491911889:70894..71048 | Clytia hemisphaerica | exon |
| TCONS_00054960-exon-scaffold_247-1491911889:69734..70836 | TCONS_00054960-exon-scaffold_247-1491911889:69734..70836 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_247 | supercontig | scaffold_247:69734..71048 - |
Blast
The following BLAST results are available for this feature:
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