TCONS_00054961 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054961
Unique NameTCONS_00054961
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1276

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054961 ID=TCONS_00054961|Name=TCONS_00054961|organism=Clytia hemisphaerica|type=transcript|length=1276bp
GCAGAGTTCAACATACCTGAACAAGTGAGTCCCATGACGTGTTTGCTGAT
GACAAACTCGATGAGTCAGATGAAGTATCAACTCTGCTCAATGTTCGTTT
GCCTCGATTTTCCCGTCTCATTATACGTTGTCTCGCTTTCCCGATATTAT
CCGTCTCACTTGACACTTTGAAGGCTTTCTTTCGTTTCAGTTTAGATTTT
CGTATAGCACCTGCCGTTTCGAGAGGTGATTTTAAGTTCGGTATAAGTCC
TTTGTGTTTGGATAATGGAGACAAATCATCATTTAATCGACATTGTTGAC
GTAAAGCTATATAGCTCTTCATGTGTCGTGTTTGGTTGCGATTTCCGCTC
TGTGTTGGAGAGACTTTGCACTCTCTTGCGCTGTAGCGTTTTACACGGCA
ACCTGAAGCTGTAACTGTTGTGTTCTCTAACATAAGTTTTCTTAAGGGTT
TCATTGCACTAGAAGGTTGGGTACTGGAGAACCTGTTTCTCTTATTTTTA
CTCTGTTTGTAGTTGTAAATTCTCTTTTTGTGGTCACTCTCTTCATCTGT
AGAGACGTCAGTTGTAGATACGCCCCCAAGATCCAACCTCCGCCCATACT
GgtaacctttttcttttgtctcGAAGGAAACAAATAAAAGTTCTATATAT
GTTATACAACAAAACTCGTTGCATTGAAAGCCTTGGAAACCTTCCCGGGT
AAAGATATGGTCTCTAAAATATTTGCCAGTGTTTTTCAGTTTGATTTGAT
CATACGATACATCGACCTCAGAATTACTACCGCAATAGCTGGCTTGTGAG
GTTTGATAACCTGTGTCTTCTGAAGATCCTGCATTGACCCGCAGTTGTGT
ATTCGGAGTAGTAGGATCATCACTTTCAATAaaaatgctgatgtcagccA
TTTTTTGATGATGTATAGGTTGAAGACGTAATCTCTGCTGGGAATCCAAC
AATAAGTCGTCATAATTTGTCTCGATGTCTGATACAATTTGATTAATCGA
GTCCAGAGTAGAGTCTGTACACGCGTCTAAAGCGTCAAAGGAAATTCGCA
AATAGCGGTTCGAGTTTGTGAGAGTTTGACCCATGTAAGGAGTTTCAACG
TTTTTGCTAACTGGGAATTCATTCATTGAGTGAGGAGAACTTATAGCGTC
TGGTGAGAACAGAGGTCGGTGGTCACTTTCATTTATGGTATTGTTTGGTG
AGTGGCAAGACAAGGGTGGCTTTAAATGGCGCCCGATAGGCTTTTGGTCT
TGCGTGCTTTCCATTTGATCCTGATT
Run BLAST on NCBI

transcript from alignment at scaffold_247:69734..71066-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054961 ID=TCONS_00054961|Name=TCONS_00054961|organism=Clytia hemisphaerica|type=transcript|length=1333bp|location=Sequence derived from alignment at scaffold_247:69734..71066- (Clytia hemisphaerica)
GCAGAGTTCAACATACCTGAACAAGTGAGTCCCATGACGTGTTTGCTGAT
GACAAACTCGATGAGTCAGATGAAGTATCAACTCTGCTCAATGTTCGTTT
GCCTCGATTTTCCCGTCTCATTATACGTTGTCTCGCTTTCCCGATATTAT
CCGTCTCACTTGACACTTTGAAGGCTTTCTTTCGTTTCAGTTTAGATTTT
CGTATAGCACCTGCCGTTTCGAGAGGTNAGGCTTTCTTTCGTTTCAGTTT
GGATTTTCGTATAGCGCCTGCCGTTTCGAGAGGTGATTTTAAGTTCGGTA
TAAGTCCTTTGTGTTTGGATAATGGAGACAAATCATCATTTAATCGACAT
TGTTGACGTAAAGCTATATAGCTCTTCATGTGTCGTGTTTGGTTGCGATT
TCCGCTCTGTGTTGGAGAGACTTTGCACTCTCTTGCGCTGTAGCGTTTTA
CACGGCAACCTGAAGCTGTAACTGTTGTGTTCTCTAACATAAGTTTTCTT
AAGGGTTTCATTGCACTAGAAGGTTGGGTACTGGAGAACCTGTTTCTCTT
ATTTTTACTCTGTTTGTAGTTGTAAATTCTCTTTTTGTGGTCACTCTCTT
CATCTGTAGAGACGTCAGTTGTAGATACGCCCCCAAGATCCAACCTCCGC
CCATACTGGTAACCTTTTTCTTTTGTCTCGAAGGAAACAAATAAAAGTTC
TATATATGTTATACAACAAAACTCGTTGCATTGAAAGCCTTGGAAACCTT
CCCGGGTAAAGATATGGTCTCTAAAATATTTGCCAGTGTTTTTCAGTTTG
ATTTGATCATACGATACATCGACCTCAGAATTACTACCGCAATAGCTGGC
TTGTGAGGTTTGATAACCTGTGTCTTCTGAAGATCCTGCATTGACCCGCA
GTTGTGTATTCGGAGTAGTAGGATCATCACTTTCAATAAAAATGCTGATG
TCAGCCATTTTTTGATGATGTATAGGTTGAAGACGTAATCTCTGCTGGGA
ATCCAACAATAAGTCGTCATAATTTGTCTCGATGTCTGATACAATTTGAT
TAATCGAGTCCAGAGTAGAGTCTGTACACGCGTCTAAAGCGTCAAAGGAA
ATTCGCAAATAGCGGTTCGAGTTTGTGAGAGTTTGACCCATGTAAGGAGT
TTCAACGTTTTTGCTAACTGGGAATTCATTCATTGAGTGAGGAGAACTTA
TAGCGTCTGGTGAGAACAGAGGTCGGTGGTCACTTTCATTTATGGTATTG
TTTGGTGAGTGGCAAGACAAGGGTGGCTTTAAATGGCGCCCGATAGGCTT
TTGGTCTTGCGTGCTTTCCATTTGATCCTGATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034634XLOC_034634Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054961-exon-scaffold_247-1575043694:70842..71066TCONS_00054961-exon-scaffold_247-1575043694:70842..71066Clytia hemisphaericaexon
TCONS_00054961-exon-scaffold_247-1575043694:69734..70784TCONS_00054961-exon-scaffold_247-1575043694:69734..70784Clytia hemisphaericaexon
TCONS_00054961-exon-scaffold_247-1510915933:70842..71066TCONS_00054961-exon-scaffold_247-1510915933:70842..71066Clytia hemisphaericaexon
TCONS_00054961-exon-scaffold_247-1510915933:69734..70784TCONS_00054961-exon-scaffold_247-1510915933:69734..70784Clytia hemisphaericaexon
TCONS_00054961-exon-scaffold_247-1491911889:70842..71066TCONS_00054961-exon-scaffold_247-1491911889:70842..71066Clytia hemisphaericaexon
TCONS_00054961-exon-scaffold_247-1491911889:69734..70784TCONS_00054961-exon-scaffold_247-1491911889:69734..70784Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_247supercontigscaffold_247:69734..71066 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.684456	0.352799	0	0	0.246581	0	0	0	0.697535	1.13309	0	0.630172	0	0.118566	0	0	0	0	0	1.15918	0	0	0.523745	0.843491	0	0	0.221278	0.150195	1.27094	0.772755
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054961 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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