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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054962 ID=TCONS_00054962|Name=TCONS_00054962|organism=Clytia hemisphaerica|type=transcript|length=3278bpRun BLAST on NCBI protein sequence of TCONS_00054962-protein >TCONS_00054962-protein ID=TCONS_00054962-protein|Name=TCONS_00054962-protein|organism=Clytia hemisphaerica|type=polypeptide|length=498bp MGGGDLNMKKHFHPLTMENLERVWKAEEKKRLEEERIAQLQSELQEERRRRun BLAST on NCBI transcript from alignment at scaffold_247:119640..149165- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00054962 ID=TCONS_00054962|Name=TCONS_00054962|organism=Clytia hemisphaerica|type=transcript|length=29526bp|location=Sequence derived from alignment at scaffold_247:119640..149165- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_247:119640..149165- >TCONS_00054962 ID=TCONS_00054962|Name=TCONS_00054962|organism=Clytia hemisphaerica|type=CDS|length=16467bp|location=Sequence derived from alignment at scaffold_247:119640..149165- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00054962 vs. Swiss-Prot (Human)
Match: CWC25 (Pre-mRNA-splicing factor CWC25 homolog OS=Homo sapiens GN=CWC25 PE=1 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 4.484e-18 Identity = 74/157 (47.13%), Postives = 105/157 (66.88%), Query Frame = 2
Query: 71 MGGGDLNMKKHFHPLTMENLERVWKAXXXXXXXXXXIAXXXXXXXXXXXXXXXXXXAVESGLVKKKSEKLDWMYSG-YKKDDADDYLLGKRIEA----KHMEPEQDTTNIPVKVEAKIYQPKASDVLM----KVKEDPLFLIKKREEESRKELAMNP 514
MGGGDLN+KK +HP T+ N+E+VWKAE+K E ++I +LQ EL+EER REE+QR A + G VKKK EKLDWMY G + D+YLLG+ I+ K E E ++ + I+ P ++ L+ K++EDPLF+I+K+EEE ++E+ NP
Sbjct: 1 MGGGDLNLKKSWHPQTLRNVEKVWKAEQKHEAERKKIEELQRELREERAREEMQRYAEDVGAVKKKEEKLDWMYQGPGGMVNRDEYLLGRPIDKYVFEKMEEKEAGCSSETGLLPGSIFAPSGANSLLDMASKIREDPLFIIRKKEEEKKREVLNNP 157 The following BLAST results are available for this feature:
BLAST of TCONS_00054962 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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