TCONS_00054964 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054964
Unique NameTCONS_00054964
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2838

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054964 ID=TCONS_00054964|Name=TCONS_00054964|organism=Clytia hemisphaerica|type=transcript|length=2838bp
cagatctacatcaataaaataacaaaaaaaaaataaagaaattgaggTGC
TGGCCTAAACAACATTCAAAATGGGTGGTGGAGATTTAAACATGAAAAAG
CATTTCCATCCTCTTACCATGGAGAACTTGGAGAGAGTTTGGaaagctga
agaaaagaaaCGTCTAGAGGAGGAACGCATCGCTCAACTTCAATCAGAAT
TACAGGAAGAGAGGCGGAGAGAGGAACTGCAAAGACAAGCTGTGGAGTCA
GGTCTTGTCAAAAAGAAGTCGGAAAAACTAGACTGGATGTACAGCGGATA
CAAAAAAGATGACGCAGATGATTATTTGCTTGGCAAACGAATCGAGGCTA
AACACATGGAGCCTGAACAAGATACTACTaacaTACCAGTGAAAGTGGAA
GCGAAGATTTACCAGCCCAAAGCTTCTGATGTTTTGATGAAAGTAAAAGA
AGACCCTTTGTTCCTGATCAAGAAACGTGAAGAAGAATCGCGTAAAGAGC
TCGCAATGAACCCTctcaaaatgcaaaaaatgaaggAGCTTTTGCAGCAA
CAAATCTCgaagaaagagaagaagaaaaagaaggataaaaagaagagaaa
atctAAAACACACTCTTCATCTGATGATGAAGAAGACTCGCGATTGCGCA
AGAgGAATAACCATCGAAGCGATCGTCACGACAATGAAGTTCCTTCACGA
CGTGATCGCTCGAGATCGCCCAGACGGGACGACCGTCGTAGAGATCGCTC
GAACGAAAGGCCGCAAGAGAGAAGGGGACAAAGACATAGAGCTAGTCCAG
AGAGAAGGAATGAAGGGCGTAGAAAAAGCCCTGAGAGAAGAGAACCGAGA
CGCAGAGCTAGTCCTGAACGGAACAGCAACCGTAGGGAAAGTCCCAATAG
AAACGACAAGCGTAGGGAAAGTCCCGATAGAAACGACAAGCGTAGGGAAA
GTCCCGATAGGAATCAAAGACGGAAGGAAAGCCCTGGTCTACGCAGAAAA
CACCAAGAGCGTCAGCTAGACAGAAATGAATGCGAGAGAAAGAGGAGAGA
TGATAGTAGTGATAGGGAAGATACCAAAAGGAGACACAATGACAGGATAC
AAGAAAAGAGGGTTAGAGCACGACACGATTCTACCTTAAGTGAAGAAAGG
GAACCACAACGTACCAAACCACAACGTACCAACAATGAACGTGATAATAA
ACGACGTCACAATTCCAGTAGTCCTGAACCTTCTcgtcaaaagaataaaa
agaaaacaagcaAACGTCGTAAAAGTTCAAGCAGTGATGACAGTAGTAAC
GATGAGATGGAACGCAAACGGCAAGAAATGATGCAAAATGCTAAagTCAG
AAATGAACAACGAGAAGACAGTATGAAAATGTTAAAGATTGATCGGCTGA
AAGAAGCAGCAGAAAAAGCAGCACGAAAAGGAAAGGCTGATTTCATTCAG
GACATGACGTTGGATTCTATATCGTCCAGTTCAACCAGTGTTGAAGATCG
AATCAAACGTGGTATATTCTCCAAACAAAGGACTAAATCTGCTATGGATA
AATTCATGAAGCGGTGACGGAAATCTGCAGGTTTGTCATTACATTTACAC
TGCTTTTACGGAGCATTCTATCGAACGGAAATTGAGAAAGTTATTAGTAT
GTGGTTTGTGGGTTAAGTCATTGTTCTGATGACATACGGAGAATAGAATG
ATACAAGCCAAATCAGCTGTGGTTAGAAACCGACTGCTAACTATCTGTTC
GTTTACTAAAACTCAGCGTCCGGCGAAGGTTGGTTAAAGAACAACGTCGA
ATCTCTTTCAAACCATTGGCACCATTGTAAGGCGTCAGGGAGTCCTCGTC
TAAACTGGAGTCTTTCGAATCGACTGTCAAAAATTTATTGTTCTTTTTCG
ACGTTCCGTTACTCTCGGTTGAAGACGTACGTAATCTACCGAAAATTGAC
CCTCGCTTGAATGGAGACCTCTTTAAGGGCGCTTTGACGTCGTCCACATT
GCAAATCGGTGGCCGCGTCGGATGTTGGGGCCCTTGAGCCAAACATCGGA
TATATTTGACGTAGACATGAAGAGATAAAACGATCGCTGCTAACAGTCCG
AGTGTGATCGGTAGGTAATAATTGGATAAAAGTTTGCCGAATGAGACGAT
AAGCGTTGCGATTGGAATGGCAAATGAAAAGGAGTTGACGATTTCGTTGT
GATTagattttttcatgatttttctgactttttcaaaaaattttaccaCC
GTCTTTCTCGTTTCCTTTGACTGTACTGACTGACGCTATCTTCTACAATA
TGCAATCGTCGAAAGATTTCTAGCAAGAAATAAGCTGTTGTTTATCATTT
GTGTTGACAACAAACAGACAAAAATATGTTCTTCGGCAAGCAAAAGACTG
TGAAAATGACCAGTTCAACAACTTTCAACCTACCCACATGAGAATAGTCT
AGCTTTCTGTTTATTTTCCCAATGTTTATTATTATGGGATTCAAAAGAAT
TGGACTCTTTAATGCAAACAAGAAATCGAAGATATTTATTGATTATCATC
TCAAAATAGAGGTTGGTTTCTTATTTATTTGTCTTATTGTCGTCactatt
ttttagaaaattcacATTATTATTGACGTTCATAAAACATCTGTGAAAGG
TCTCTATggacttgtattatatattttatattttaatccAATACAGAACT
TTTTAAAGAtgaattttgggaatttaaatgaACTCAAATAAATAGGTTAT
TTTGATTAACTTTAGGtccctttttattttcaaaagactATCAATAAATA
TGGTAAATAATTTAAAGGTAAATATGAATGGAGAACGG
Run BLAST on NCBI

transcript from alignment at scaffold_247:137960..149165-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054964 ID=TCONS_00054964|Name=TCONS_00054964|organism=Clytia hemisphaerica|type=transcript|length=11206bp|location=Sequence derived from alignment at scaffold_247:137960..149165- (Clytia hemisphaerica)
CAGATCTACATCAATAAAATAACAAAAAAAAAATAAAGAAATTGAGGTGC
TGGCCTAAACAACATTCAAAATGGGTGGTGGAGATTTAGTAAGTCTTATA
TATCAACCTGTGATTAAATTATTGCAAAAATCATTCTTTTGATTAACAGA
GATATGCTTTCTCATTTCAGGTCATACAAATTTTTAGCGCCACTTGTTTC
CTTATCAAGACATTTGCATCAATCCTTATAAAATGACCCTAAATTTATTC
ACCTCACTCACTTTTTATCATGAGACACAAGAAACCCATACATTCATTTT
TTTATCTGTTTACTTTATCAGAACATGAAAAAGCATTTCCATCCTCTTAC
CATGGAGAACTTGGAGAGAGTTTGGAAAGCTGAAGAAAAGAAACGTCTAG
AGGAGGAACGCATCGCTCAACTTCAATCAGAATTACAGGAAGAGAGGCGG
AGAGAGGAACTGCAAAGACAAGCTGTGGAGTCAGGTCTTGTCAAGTATGC
GTATATTGATATAATTTCATATTTATGAAGGGGCAACTTGAAACAATTCA
TAAAATAGAAACATAAAACTTTAACAAGCCTGGACATACATGCGGTAAAC
TTTTTTTTATTTTTGATGTTTTTGGTTTACCACCTGAAAAGTGATTTGCA
TTACATTATCAGAAGGCAGCGCACGTGTTCTTTGTCGACTCGATTATTGA
AAAATTTTCCAACCCTGGGTTTACAAACATCTAGGTTGACCAAGCTATAA
ATAGCTTCTAATCCGCTGATGTCGTTTTTCCTTTTTTTTGACTTTTGGCC
AAAAATTGACGTGCAGTGTATCAAACGCCACATGTGGGGGATATACATTC
GGCAGACGTTTTTCAGGATATTTTTCAGTAGTGTTCACCCAACCTCTAAA
CTAAGTTATAAAGTCTAAAATTCGATTCCATTATAGAAAGAAGTCGGAAA
AACTAGACTGGATGTACAGCGGATACAAAAAAGATGACGCAGATGATTAT
TTGCTTGGCAAACGAATCGAGGCTAAACACATGGAGCCTGAACAAGATAC
TACTGTAACTACCTAAAATTTCATTCCAATTTATAAGCTCTCTTTGCAAA
ATTCTAAATGCTTGTTTATGTCTTATTTGTTGTAAAAAACCTTAGTTAGT
GTATTATTAAAGATATAGGAGATGCGCCTCTAATGCTGACAAAATAGAAA
TTAACAGAAATATTTGTGCTCGTGCTGCGCAGGAGGAGAGAAAAGATTTT
TTTTGTTTGAAAATGCTTTGTTATCAAAGCCTTACGTTAATCGTTGTTTT
TAGTGAGTAATAATTTTTTTAAATTTCTGATTTTTTTTTGATTTTTTTCT
TTTTTCAGAACATACCAGTGAAAGTGGAAGCGAAGATTTACCAGCCCAAA
GCTTCTGATGTTTTGATGAAAGTAAAAGAAGACCCTTTGTTCCTGATCAA
GAAACGTGAAGAAGAATCGCGTAAAGAGCTCGCAATGAACCCTCTCAAAA
TGCAAAAAATGAAGGTAAATTCGCCGTGTCAATTCAAGACAGCCTGAAGT
CCATTTTTTCCATTTTGAGATGATTGACTTTAAAAGTTTCATTTGCTGAT
AATTAAGAAAGAAATAATGCCAAGAGGCCATACTTTTGATATTAGGGAAG
GGTATTATAGTTATCTTTCAGTGGTTAAAAAGAGGTTTTAATAGCTTGCT
CCAGAGGCTCTAAAATGGCATTTATTGGACTTTTAAAGGCAGTATTGAAT
TTAACTTAAAATCTAAGCAAGTTTCAAGCCAAAATCGAGCTTTAATGCCT
TAAGTCCATTAACCAGATGTGTTGAACTTAAGGGTACACATTTCATGTCA
ATGATTCAGAACCTAAGGCTGTTTATGGTTGATATTATGGAGCATTCTAA
ATTCTTTTTTTTTCAATTGCAAAATGCACCACTTTTCTATAAGAATTATG
TGGATTTGAGACCATTTTTGAAAAGCGTGCATGCTGAAATAGGGGGTTAT
GGTCTTAAGTCAATTTTCGAAAAAATGGACTTAAGTCTGTTTTGAATTGA
CACGGCGAATTAGCCACTGAAACCAAACCTCGTATTGAACCTTTACCATC
AAATCTTTGTCTCCTCAGAGTCTATTTTCCTCGAGGTCAGTCGTTTTCCT
TCTTTATATATACCTATATCTCAGCTCTCTGATAACTGTTTTATTTCATA
TTTTTCAGGAGCTTTTGCAGCAACAAATCTCGAAGAAAGAGAAGAAGAAA
AAGAAGGATAAAAAGAAGAGAAAATCTAAAACACACTCTTCATCTGATGA
TGAAGAAGACTCGCGATTGCGCAAGAGGTAAAATAAATTTGTATTTCCAT
ATAATTTGTATTGTGTATATGATTTTTTGACTTTAGAAATTATCAGATAA
GTCTGTCGGAAAACGATTTCAAGCAACTATTCTCTGCATTTTTTAAGGAC
CATTGCAGATTTACAGTCGAGCGTGTCTTACCCATTCTTCTACTCTTAGG
TTCCTAATAAAAAGGGGGGGTTGGAAAATTTTCGAGATTTTAATAAACGG
GGGGGGGGACCTAATTGCCGAGGGGTTTGAAATTGTACTTCTAAAAATAA
GGTAAATATATGCTAAAATTAGGCTAATTAGAGAAAAATAAGGGGCCTTC
TCTTTGACAGCTGAAAATAGCCATAAGCAAAAAGCTCGTACCCATGTCTA
TTTTTAGCTGTTAAAGCATAATAATTTGAGTTGAGTTCTTTTTCAGGACA
TGAAACTTGGATATTCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NCGTTTATTTGGAACCTAAGATTAATATTATAACCATAAGCTTTTGAGAA
CTCTTTCCCACGAGCTTTTTTGAACTCTGAATTTTTGGGCATACTTCTAC
GATGTAAGCTTTTTTTTAGAGATGGTGCTAATTAAAATCTAATCATCTGT
CCATGGAAGGGATTAAGCTCTTCAGAAATATTTTCTTCGAATTCATTTAA
AATGAGAAGATACTTCTTTGTTTAGGAATAACCATCGAAGCGATCGTCAC
GACAATGAAGTTCCTTCACGACGTGATCGCTCGAGATCGCCCAGACGGGA
CGACCGTCGTAGAGATCGCTCGAACGAAAGGCCGCAAGAGAGAAGGGGAC
AAAGACATAGAGCTAGTCCAGAGAGAAGGAATGAAGGGCGTAGAAAAAGC
CCTGAGAGAAGAGAACCGAGACGCAGAGCTAGTCCTGAACGGAACAGCAA
CCGTAGGGAAAGTCCCAATAGAAACGACAAGCGTAGGGAAAGTCCCGATA
GAAACGACAAGCGTAGGGAAAGTCCCGATAGGAATCAAAGACGGAAGGAA
AGCCCTGGTCTACGCAGAAAACACCAAGAGCGTCAGCTAGACAGAAATGA
ATGCGAGAGAAAGAGGAGAGATGATAGTAGTGATAGGGAAGATACCAAAA
GGAGACACAATGACAGGATACAAGAAAAGAGGGTTAGAGTAAGTTTTAAT
GTTAGGGTTTACTTGGTGTAAACTGTATTTTGGGTTTCAAAATCTTTCCA
TCATGAAAATTGGATCGGTCGTAAATGTCATACTTCAGTTTGTAAACTAT
TAAAAATTTCATTAAGAATCAACTAATTGTTTATTTTCACCTCTAAAATA
AAGTAAAATAGGTCAAAAATTAAAGCCGTTTTTGGATAAGAAATTAGAAA
TTTTGGCCCATTTATCACCAGCCTAATAAGATAATGTATTCAAAAGCCTT
AAAATGAATAAAATATTTTTTTAAAAGAATGACAATTTGAACGTACATAA
ATGATTAAAATGAATAACTTTGATAAAGAGTACCTTTAAATGGTTGATTT
AGTTCGCTAAGGATTAAATTAATTATGCAGTTTCACTCTCCAAATTTAAG
TTTGGCTTACCTCTTAAAGATATTGAACCTTTATACCTTTTGACTTTCAA
GGCACGACACGATTCTACCTTAAGTGAAGAAAGGGAACCACAACGTACCA
AACCACAACGTACCAACAATGAACGTGATAATAAACGACGTCACAATTCC
AGTAGTCCTGAACCTTCTCGTCAAAAGAATAAAAAGAAAACAAGCAAACG
TCGTAAAAGGTTTGGTTTTGTTTATTTTAGTCTCTCAGACACAATGGAAG
GGGTGTGCTTGGATACGCTTTTTATAAGAATAGTGTACTTTGGGGTGAGG
GGTGAGGGTCAAGTATTCTTAAGAAATTGCCAAAATTGAGGGTGAATTAT
TCTTAACGTATTCTTACTTTTTTAGACTTGACTTTTTTACAAACATGATA
AATGATCAATTTGAGAGTTTTGGACTTTTGAGTGAACATTTGGGTTAAAA
TTACATTTCTTCCTCAAAACTTCTTTTTATCTCTAACAAAGGAAGTAATT
CGTTCTGTTAACCAAATACAAAATGACTGCATTCTTATGAAATTCTGTGA
AATTAACCTTAGAGGGTATTCTTAGGGTATTGTTACGATTTGGCCAATTT
TCACCCTGATATATAGAACATATTCTTATTAAAAAAACGCGTGTATAACA
TTTACACCTGAACATTATAATTGTTAACCCCCGAACAAAGGAAATGATTC
TCGAACAAGGAATTGTATAGTCTCGGAGAAGGAGAAATCCTACGAGAGCA
AATATCCTTTTGTAAAAGGTCAGTTTTCTGGTATAGAGCACTTTGTACCT
CTCATACAGAATTACGTTTTAGATGTGAAAAGGCTAAACAAAACAAGTAA
AAATTCCCTGCAAACGAGATTATTGATCAAAATAAAAACGTCTTAACAAA
TATAATTGTTGAGTTTCATTTTTAAAGCACCTGATTTCACTTCGTTTTAT
TTTCCTTCCAGTTCAAGCAGTGATGACAGTAGTAACGATGAGATGGAACG
CAAACGGCAAGAAATGATGCAAAATGCTAAGTAATGCTTGCCCTCTGCGT
GTATGGATCATTTCCCAAAACGTTTAACCAATCAATCTTTTCAAGAATGC
AAACGCGAGCCTTGTAAATCATTGATTTCTCATTAATAACCAAAAAGATC
AAATAAATTAGTTAGGTTTTCAACCTCCCAAATAATATTCAAACATAAAG
AAGAATAAAGGCTACCTACTCCAAAGCTCAGTTTTTTTGGCAAATTTTCA
TAAAGGCTCGTCACTAGCACTAGGACCCAAAGTAGCTGTAATTAGCCTTA
ATTTATAAATTCATTGTTTTCTTTTTAGAGTCAGAAATGAACAACGAGAA
GACAGTATGAAAATGTTAAAGGTAGGATTTCATAAAAAATAGTGATCTAA
TTCCTTGATACAAATTACAAAGTTACACCGTAAAATGGTGTCCCACTCAG
GCTTAAAAATCGTGATCTAACACGATTTTGCGAGATTCATGTTTATTAAA
TAGGGAAAAATTCGCGAAACAACGAAATGAAATCTTGTGAATCAAAATTA
CCCTCAAACAGAGCAAGTTTACACCCCTCCCCCCCTGGGACAAGGTAAAT
TTTGTAGATCCTTCATCCCACATCCTATATCATTGATTTTAAAGCCCGAA
GGGCTAGAGCTCAATCTCCAACCTTTCTCAGGCAAGAAAAAGTGAAGCCT
TATTTTGACGACAGATTGAATCTAGCAATTCATTTGTTTACGATTGATAT
TTTTTTCGAAAATTAACGGTAAATTTTAGTTTCAATCTGTCATTTGTGTA
AAAACCAGGCGAGCCGCTCAAGGCCGCGCAACTTTGGTAGGATTTGTTGG
CTTCAAATCCTACCAAGGAGATTGACTTCTAGCCCTTCGGGCTTATATTT
CATTGTCCTATATCCTTCACTAACCCTGGGACACTATATCCTCCACCCCA
TGTACAAACCTTTTCTAGAAGAGCCTAATCTTAGACCCACTCCTCTTAAG
GTGGGAGTCACATGAAAAATTGAGAAAGTTGATTTTTTACTTTTTCCTGT
ATAACTTTTGAACTGGAATAGATTTTTAAATGAAATTTTCTACAGAGGTA
ACTTAACAATAGATGATTTCAAAAATGTAAAAAAAAGTCTAAAAATAGCC
AAGACGGGGGTAAAATCAGCCAGGGGGTAATGTACTGTGAAAATATTGTG
TCAACGTTTTAGAAAGTTCTACAAAACCTATCAAAACAAATTTTTTTGCA
GCTTGTTAATATTTGGATAAGGAGTGTTATGAATGGAATTTTTTTTTGAA
ATTTCATTCCAGGGGGTCTGGAAACTAAAAAATGCATTTTTTGAATNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGTATTTTTTCA
AAAATGTAATCCATTCATAACACTCTAGACCATAAATTGAATTTCTCCTG
AAAATTTCAAGTTCATAGCACTTGTCAATCCTGAGAAAATGTTGCCAAGG
TGTGCGAAAACCCCCTGAAAAGTAAAGTCAGAAGTAGATTATATCTCTAT
TTCTCTGTAATAAATCAACCGTTTTACAAAATTTTTTTGCTGTTTGACTA
AAATGGACTGTAGTTCTACTTTATATACTTTAAAAAAGGCTTTGAAATAT
CAAAATAGTCCAGAAATTCCAAATTATCACTTTCACGTGATGTGCGCCAA
TCCTTAAAATTTTGCGCCAAACTCCACGTCAACATTGATTTAAGTCAATT
TAAATGTGTTTTCACAACAAAAACCATATTTCCAATGTAATAGATCATCC
TAGCATATTTTCCCCACAGATTCTGCCAGTTAAAGGTTAATCTAAAGTTG
ATCTGTTGTGATACAAGAATCCACTTGGCTGCTTTGACATCTAGCCGTGC
ACGACGATTTCTTCGACTTTGTGAATGTAAATAATCCAGCCAGAGGGCGG
AGGGCAGGGAGCGCCCCAAACCTTCAATAATTTATCACATACAATTGTTA
AACCAGCCTCCAGGCTTTCAATTCCTTTAACACTTGGATCTTTAAAAAGA
TACATCATTGAATATGCCTTTGGTCTTCGACCTTGCAATAAGTTTTTCGG
TGTCGTCAAACTAAGTTCATATCGAAAACGTTGAGTTTGAGAATCAAGTC
TTTGGTTTCACCTAGCTGAAGCTTTCTTAGTTGAGAAGAATGACATTAAA
GAGCTAAAAATGTCATCAGTAAATCCGACATTTCCAAATTAAAGCAGTTT
TCATAGTCAAAATCACTGCTGACAGCCTCCAAAATTTGTATGTTTTTAAA
AATATCATTTCTTTGGTTACCATCTTTGATTACGTCATATTAAGAAATCC
CGCGAAAAAAGGCGGTATTGATTTAGACGCCCGAAAAGGGCGTGAAAAGA
TCTTTCATTTGGTATGTCATGATCCTATGTTTAGATCAGCCATAAAGAAA
TCGGGCCCTAGCAACGGGTATGATTTTTCGTTGCTAAGGAAAATACTTTA
GACCATGGTCTAGAAAAAACCTTATATCTCAGGAAATATAAATGCTACGG
CCTTAAAATTTTCAGAGTGTGTTCAGAAAGGATATAGGGTCATAAAACGC
GCAAAAAATCGAAATCGATAATTTTTTCACCAAATCTCAAAACTTCATGT
GACTCCCACCTTAACGATTTTGTTTCTTGCTTTTAGATTGATCGGCTGAA
AGAAGCAGCAGAAAAAGCAGCACGAAAAGGAAAGGCTGATTTCATTCAGT
ACGTTAACAAATTTGTGATATTTGTAACATGATATCAGTTGATATAAACT
ACAATTTGTCACTTTCCATAAAATTTTCGCTACGATTACAGCTCACAAAT
CAGCCTCTTTCTCATCTAATTTCTTTCATTATCCCGAGGGTTTTGGCCAA
ATTTCAGATTTTAGATATTCCACGAGGACTAAATTTCGTGAAAAGAAAAT
CCTTAAAAATTAATCCCCACGAAATTAAGTCTAACAATGTTTCGTTATTT
TAGGGACATGACGTTGGATTCTATATCGTCCAGTTCAACCAGTGTTGAAG
ATCGAATCAAACGTGGTATATTCTCCAAACAAAGGACTAAATCTGCTATG
GATAAATTCATGAAGCGGTGACGGAAATCTGCAGGTTTGTCATTACATTT
ACACTGCTTTTACGGAGCATTCTATCGAACGGAAATTGAGAAAGTTATTA
GTATGTGGTTTGTGGGTTAAGTCATTGTTCTGATGACATACGGGGAATAG
AATGATACAAGCCAAATCAGCTGTGGTTAGAAACCGACTGCTANTGATGA
CATACGGAGAATAGAATGATACAAGCCAAATCAGCTGTGGTTAGAAACCG
ACTGCTAACTATCTGTTCGTTTACTAAAACTCAGCGTCCGGCGAAGGTTG
GTTAAAGAACAACGTCGAATCTCTTTCAAACCATTGGCACCATTGTAAGG
CGTCAGGGAGTCCTCGTCTAAACTGGAGTCTTTCGAATCGACTGTCAAAA
ATTTATTGTTCTTTTTCGACGTTCCGTTACTCTCGGTTGAAGACGTACGT
AATCTACCGAAAATTGACCCTCGCTTGAATGGAGACCTCTTTAAGGGCGC
TTTGACGTCGTCCACATTGCAAATCGGTGGCCGCGTCGGATGTTGGGGCC
CTTGAGCCAAACATCGGATATATTTGACGTAGACATGAAGAGATAAAACG
ATCGCTGCTAACAGTCCGAGTGTGATCGGTAGGTAATAATTGGATAAAAG
TTTGCCGAATGAGACGATAAGCGTTGCGATTGGAATGGCAAATGAAAAGG
AGTTGACGATTTCGTTGTGATTAGATTTTTTCATGATTTTTCTGACTTTT
TCAAAAAATTTTACCACCGTCTTTCTCGTTTCCTTTGACTGTACTGACTG
ACGCTATCTTCTACAATATGCAATCGTCGAAAGATTTCTAGCAAGAAATA
AGCTGTTGTTTATCATTTGTGTTGACAACAAACAGACAAAAATATGTTCT
TCGGCAAGCAAAAGACTGTGAAAATGACCAGTTCAACAACTTTCAACCTA
CCCACATGAGAATAGTCTAGCTTTCTGTTTATTTTCCCAATGTTTATTAT
TATGGGATTCAAAAGAATTGGACTCTTTAATGCAAACAAGAAATCGAAGA
TATTTATTGATTATCATCTCAAAATAGAGGTTGGTTTCTTATTTATTTGT
CTTATTGTCGTCACTATTTTTTAGAAAATTCACATTATTATTGACGTTCA
TAAAACATCTGTGAAAGGTCTCTATGGACTTGTATTATATATTTTATATT
TTAATCCAATACAGAACTTTTTAAAGATGAATTTTGGGAATTTAAATGAA
CTCAAATAAATAGGTTATTTTGATTAACTTTAGGTCCCTTTTTATTTTCA
AAAGACTATCAATAAATATGGTAAATAATTTAAAGGTAAATATGAATGGA
GAACGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034635XLOC_034635Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054964-exon-scaffold_247-1575043694:149078..149165TCONS_00054964-exon-scaffold_247-1575043694:149078..149165Clytia hemisphaericaexon
TCONS_00054964-exon-scaffold_247-1575043694:148672..148844TCONS_00054964-exon-scaffold_247-1575043694:148672..148844Clytia hemisphaericaexon
TCONS_00054964-exon-scaffold_247-1575043694:148112..148229TCONS_00054964-exon-scaffold_247-1575043694:148112..148229Clytia hemisphaericaexon
TCONS_00054964-exon-scaffold_247-1575043694:147652..147807TCONS_00054964-exon-scaffold_247-1575043694:147652..147807Clytia hemisphaericaexon
TCONS_00054964-exon-scaffold_247-1575043694:146839..146957TCONS_00054964-exon-scaffold_247-1575043694:146839..146957Clytia hemisphaericaexon
TCONS_00054964-exon-scaffold_247-1575043694:143928..144390TCONS_00054964-exon-scaffold_247-1575043694:143928..144390Clytia hemisphaericaexon
TCONS_00054964-exon-scaffold_247-1575043694:143307..143464TCONS_00054964-exon-scaffold_247-1575043694:143307..143464Clytia hemisphaericaexon
TCONS_00054964-exon-scaffold_247-1575043694:142486..142554TCONS_00054964-exon-scaffold_247-1575043694:142486..142554Clytia hemisphaericaexon
TCONS_00054964-exon-scaffold_247-1575043694:142145..142187TCONS_00054964-exon-scaffold_247-1575043694:142145..142187Clytia hemisphaericaexon
TCONS_00054964-exon-scaffold_247-1575043694:139668..139729TCONS_00054964-exon-scaffold_247-1575043694:139668..139729Clytia hemisphaericaexon
TCONS_00054964-exon-scaffold_247-1575043694:139179..139412TCONS_00054964-exon-scaffold_247-1575043694:139179..139412Clytia hemisphaericaexon
TCONS_00054964-exon-scaffold_247-1575043694:137960..139114TCONS_00054964-exon-scaffold_247-1575043694:137960..139114Clytia hemisphaericaexon
TCONS_00054964-exon-scaffold_247-1510915933:149078..149165TCONS_00054964-exon-scaffold_247-1510915933:149078..149165Clytia hemisphaericaexon
TCONS_00054964-exon-scaffold_247-1510915933:148672..148844TCONS_00054964-exon-scaffold_247-1510915933:148672..148844Clytia hemisphaericaexon
TCONS_00054964-exon-scaffold_247-1510915933:148112..148229TCONS_00054964-exon-scaffold_247-1510915933:148112..148229Clytia hemisphaericaexon
TCONS_00054964-exon-scaffold_247-1510915933:147652..147807TCONS_00054964-exon-scaffold_247-1510915933:147652..147807Clytia hemisphaericaexon
TCONS_00054964-exon-scaffold_247-1510915933:146839..146957TCONS_00054964-exon-scaffold_247-1510915933:146839..146957Clytia hemisphaericaexon
TCONS_00054964-exon-scaffold_247-1510915933:143928..144390TCONS_00054964-exon-scaffold_247-1510915933:143928..144390Clytia hemisphaericaexon
TCONS_00054964-exon-scaffold_247-1510915933:143307..143464TCONS_00054964-exon-scaffold_247-1510915933:143307..143464Clytia hemisphaericaexon
TCONS_00054964-exon-scaffold_247-1510915933:142486..142554TCONS_00054964-exon-scaffold_247-1510915933:142486..142554Clytia hemisphaericaexon
TCONS_00054964-exon-scaffold_247-1510915933:142145..142187TCONS_00054964-exon-scaffold_247-1510915933:142145..142187Clytia hemisphaericaexon
TCONS_00054964-exon-scaffold_247-1510915933:139668..139729TCONS_00054964-exon-scaffold_247-1510915933:139668..139729Clytia hemisphaericaexon
TCONS_00054964-exon-scaffold_247-1510915933:139179..139412TCONS_00054964-exon-scaffold_247-1510915933:139179..139412Clytia hemisphaericaexon
TCONS_00054964-exon-scaffold_247-1510915933:137960..139114TCONS_00054964-exon-scaffold_247-1510915933:137960..139114Clytia hemisphaericaexon
TCONS_00054964-exon-scaffold_247-1491911889:149078..149165TCONS_00054964-exon-scaffold_247-1491911889:149078..149165Clytia hemisphaericaexon
TCONS_00054964-exon-scaffold_247-1491911889:148672..148844TCONS_00054964-exon-scaffold_247-1491911889:148672..148844Clytia hemisphaericaexon
TCONS_00054964-exon-scaffold_247-1491911889:148112..148229TCONS_00054964-exon-scaffold_247-1491911889:148112..148229Clytia hemisphaericaexon
TCONS_00054964-exon-scaffold_247-1491911889:147652..147807TCONS_00054964-exon-scaffold_247-1491911889:147652..147807Clytia hemisphaericaexon
TCONS_00054964-exon-scaffold_247-1491911889:146839..146957TCONS_00054964-exon-scaffold_247-1491911889:146839..146957Clytia hemisphaericaexon
TCONS_00054964-exon-scaffold_247-1491911889:143928..144390TCONS_00054964-exon-scaffold_247-1491911889:143928..144390Clytia hemisphaericaexon
TCONS_00054964-exon-scaffold_247-1491911889:143307..143464TCONS_00054964-exon-scaffold_247-1491911889:143307..143464Clytia hemisphaericaexon
TCONS_00054964-exon-scaffold_247-1491911889:142486..142554TCONS_00054964-exon-scaffold_247-1491911889:142486..142554Clytia hemisphaericaexon
TCONS_00054964-exon-scaffold_247-1491911889:142145..142187TCONS_00054964-exon-scaffold_247-1491911889:142145..142187Clytia hemisphaericaexon
TCONS_00054964-exon-scaffold_247-1491911889:139668..139729TCONS_00054964-exon-scaffold_247-1491911889:139668..139729Clytia hemisphaericaexon
TCONS_00054964-exon-scaffold_247-1491911889:139179..139412TCONS_00054964-exon-scaffold_247-1491911889:139179..139412Clytia hemisphaericaexon
TCONS_00054964-exon-scaffold_247-1491911889:137960..139114TCONS_00054964-exon-scaffold_247-1491911889:137960..139114Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_247supercontigscaffold_247:137960..149165 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
27.7073	24.671	11.9566	10.6858	33.1092	23.5474	22.1372	23.6764	15.1734	16.0223	15.2166	12.3007	3.04107	4.27335	8.45269	9.57721	14.8654	13.6782	0.338887	1.53602	8.96659	7.21172	21.7886	15.9309	8.73584	7.20476	7.50792	6.56068	14.478	16.5753
Blast
[Close]
BLAST of TCONS_00054964 vs. Swiss-Prot (Human)
Match: CWC25 (Pre-mRNA-splicing factor CWC25 homolog OS=Homo sapiens GN=CWC25 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.667e-18
Identity = 74/157 (47.13%), Postives = 105/157 (66.88%), Query Frame = 2 
Query:   71 MGGGDLNMKKHFHPLTMENLERVWKAXXXXXXXXXXIAXXXXXXXXXXXXXXXXXXAVESGLVKKKSEKLDWMYSG-YKKDDADDYLLGKRIEA----KHMEPEQDTTNIPVKVEAKIYQPKASDVLM----KVKEDPLFLIKKREEESRKELAMNP 514
            MGGGDLN+KK +HP T+ N+E+VWKAE+K   E ++I +LQ EL+EER REE+QR A + G VKKK EKLDWMY G     + D+YLLG+ I+     K  E E   ++    +   I+ P  ++ L+    K++EDPLF+I+K+EEE ++E+  NP
Sbjct:    1 MGGGDLNLKKSWHPQTLRNVEKVWKAEQKHEAERKKIEELQRELREERAREEMQRYAEDVGAVKKKEEKLDWMYQGPGGMVNRDEYLLGRPIDKYVFEKMEEKEAGCSSETGLLPGSIFAPSGANSLLDMASKIREDPLFIIRKKEEEKKREVLNNP 157
The following BLAST results are available for this feature:
BLAST of TCONS_00054964 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CWC253.667e-1847.13Pre-mRNA-splicing factor CWC25 homolog OS=Homo sap... [more]
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