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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054968 ID=TCONS_00054968|Name=TCONS_00054968|organism=Clytia hemisphaerica|type=transcript|length=4770bpRun BLAST on NCBI transcript from alignment at scaffold_247:158791..197140- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00054968 ID=TCONS_00054968|Name=TCONS_00054968|organism=Clytia hemisphaerica|type=transcript|length=38350bp|location=Sequence derived from alignment at scaffold_247:158791..197140- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00054968 vs. Swiss-Prot (Human)
Match: K1324 (UPF0577 protein KIAA1324 OS=Homo sapiens GN=KIAA1324 PE=2 SV=2) HSP 1 Score: 119.013 bits (297), Expect = 8.424e-27 Identity = 165/696 (23.71%), Postives = 260/696 (37.36%), Query Frame = 3
Query: 234 LSPCTEDNFGEFITACDPETQQKKI-VYYMHKNCDFDSNKSVPFPKPIENLPCF--CQPGHGLQSKNSTKCTPCSKGYYSHG-GELIDDWSDWNTTKSKGVPGLAYG--VDTYCSDFLSGKTCSAWRPSADFSYLLSGEFKNSTQLRCFEQSMLVISRVFLLPGQQNKISFEYKVDGASCRKGSRSCSQGLHFYVNEELKLKSDTQFSWKKLEVSLKPGATRLKFVYHKSCTREAILDVAYIRHLSMVGTDSGQGLTAKAVKCTACNSGSYADTEGSTECTKCVQNEFQPKQGQEKCEKCGVNQFSRIGETRCYDLPDCQKKDYFIKPKPIETCVKNGSTDVYVREQVRGLPSWPVRP--CKPDKSMQVKQP----KVQC-RCLAGFAMTTGGKKINCEKCEVGKYSDGFMKECKTCPAGHAAIPGFFLDSFTEDRIPGVIKQNC-SGALCQAKDNQYWIPRGDYMATRRIAGNFE---VTLDF------QDIEVDYHD---AKVTFN----CSIDCRISTDGKRLAKHDHCFLRFVIQKWNETSQSYRSILEQDCVSKYRQKLRDGTMMNHVYPVPDPGRYSFRSLFHHEDEGNYSLLSYEARVYHFDVTGAKQGSAQKCVKCPAGEYLTKTGAFCLKCPEGKYSKEGSVECLDCPDNSFSDKE---GSGGCTKCGAGTTSNHNKTGCDYNKCQF 2222
L C E + TACD + ++ V + C P PI+ C C G L K+ + C PC++G YS G G D+W + G L+ +D ++ T S W P D+ + E + + ++ + P + I FE+ V C+ + ++ + T+ W+ V L G L + + +R++++ G A +C C G+YAD +GS+ C C N + K G+ C +C +++S G + C P C KDYF C NG T + + W +P C D VK P K C C GF T C+ C G YS+G +C CPAG GF + + +P ++ SG + K W GD++ T A + + +TL Q + D + A++TF CS++C + + + K ++ QSY I+E++ + + + R+ FH E + + A++Y +VT G A C C + G+ C CP G Y S C CP N+ G C CG GT +N + C YN C F
Sbjct: 46 LHACKESEYHYEYTACDSTGSRWRVAVPHTPGLC-------TSLPDPIKGTECSFSCNAGEFLDMKDQS-CKPCAEGRYSLGTGIRFDEWDEL----PHGFASLSANMELDDSAAESTGNCTSSKWVPRGDYIASNTDECTATLMYAVNLKQSGTVNFEYYYP--DSSIIFEFFVQNDQCQPNA------------DDSRWMKTTEKGWEFHSVELNRGNNVLYWRTTAFSVWTKVPKPVLVRNIAITGV-------AYTSECFPCKPGTYADKQGSSFCKLCPANSYSNK-GETSCHQCDPDKYSEKGSSSCNVRPACTDKDYFYTHT---ACDANGETQLMYK--------W-AKPKICSEDLEGAVKLPASGVKTHCPPCNPGFFKTNNS---TCQPCPYGSYSNG--SDCTRCPAGTEPAVGFEYKWW--NTLPTNMETTVLSGINFEYKGMTGWEVAGDHIYTAAGASDNDFMILTLVVPGFRPPQSVMADTENKEVARITFVFETLCSVNCELYF---MVGVNSRTNTPVETWKGSKGKQSYTYIIEENTTTSFTWAFQ-------------------RTTFH---EASRKYTNDVAKIYSINVTNVMNGVASYCRPCALEA--SDVGSSCTSCPAGYYIDRDSGTCHSCPTNTILKAHQPYGVQACVPCGPGTKNNKIHSLC-YNDCTF 660 The following BLAST results are available for this feature:
BLAST of TCONS_00054968 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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