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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054970 ID=TCONS_00054970|Name=TCONS_00054970|organism=Clytia hemisphaerica|type=transcript|length=4642bpRun BLAST on NCBI protein sequence of TCONS_00054970-protein >TCONS_00054970-protein ID=TCONS_00054970-protein|Name=TCONS_00054970-protein|organism=Clytia hemisphaerica|type=polypeptide|length=991bp VFLRYESFKRKGETWLCLLNLNNRIIKTLPPTRYKHLNAVAFAFVFKQKIRun BLAST on NCBI transcript from alignment at scaffold_247:158791..250388- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00054970 ID=TCONS_00054970|Name=TCONS_00054970|organism=Clytia hemisphaerica|type=transcript|length=91598bp|location=Sequence derived from alignment at scaffold_247:158791..250388- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_247:158791..250388- >TCONS_00054970 ID=TCONS_00054970|Name=TCONS_00054970|organism=Clytia hemisphaerica|type=CDS|length=41664bp|location=Sequence derived from alignment at scaffold_247:158791..250388- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00054970 vs. Swiss-Prot (Human)
Match: K1324 (UPF0577 protein KIAA1324 OS=Homo sapiens GN=KIAA1324 PE=2 SV=2) HSP 1 Score: 122.094 bits (305), Expect = 9.451e-28 Identity = 156/652 (23.93%), Postives = 245/652 (37.58%), Query Frame = 1
Query: 235 PKPIENLPCF--CQAGHGLQSKNSTKCTPCAKGYYSHG-GELIDDWSDWNTTKSKGVPGLAYG--VDTYCSDFLSGKTCSAWRPSADFSYLLSGEFKNSTQLRCFEQSMLVISRVFLLPGQQNKISFEYKVDGASCRKGSRSCSQGLHFYVNEELKLKSDTQFSWKKLEVSLKPGATRLKFVYHKSCTREAILDVAYIRHLSMVGTDSGQGLTAKAVKCTACNSGSYADTEGSTECTKCVQNEFQPKQGQEKCEKCGVNQFSRIGETRCYDLPDCQKKDYFIKPKPIETCVKNGSTDVYVREQVRGLPSWPVRP--CKPDKSMQVKQP----KVQC-RCLAGFAMTTGGKKINCEKCEVGKYSDGFMKECKTCPAGHAAIPGFFLDSFTEDRIPGVIKQNC-SGALCQAKDNQYWIPRGDYMATRRIAGNFEVTL---------DFQDIEVDYHD---AKVTFN----CSIDCRISTDGKRLAKHDHCFLRFVIQKWNETSQSYRSILEQDCVSKYRQKLRDGTMMNHVYPVPDPGRYSFRSLFHHEDEGNYSLLSYEARVYHFDVTGAKQGSAQKCVKCPAGEYLTKTGAFCLKCPEGKYSKEGSVECLDCPDNSFSDKE---GSGGCTKCGAGTTSNHNKTGCDYNKCQF 2094
P PI+ C C AG L K+ + C PCA+G YS G G D+W + G L+ +D ++ T S W P D+ + E + + ++ + P + I FE+ V C+ + ++ + T+ W+ V L G L + + +R++++ G A +C C G+YAD +GS+ C C N + K G+ C +C +++S G + C P C KDYF C NG T + + W +P C D VK P K C C GF T C+ C G YS+G +C CPAG GF + + +P ++ SG + K W GD++ T A + + + Q + D + A++TF CS++C + + + K ++ QSY I+E++ + + + R+ FH E + + A++Y +VT G A C C + G+ C CP G Y S C CP N+ G C CG GT +N + C YN C F
Sbjct: 83 PDPIKGTECSFSCNAGEFLDMKDQS-CKPCAEGRYSLGTGIRFDEWDEL----PHGFASLSANMELDDSAAESTGNCTSSKWVPRGDYIASNTDECTATLMYAVNLKQSGTVNFEYYYP--DSSIIFEFFVQNDQCQPNA------------DDSRWMKTTEKGWEFHSVELNRGNNVLYWRTTAFSVWTKVPKPVLVRNIAITGV-------AYTSECFPCKPGTYADKQGSSFCKLCPANSYSNK-GETSCHQCDPDKYSEKGSSSCNVRPACTDKDYFYTHT---ACDANGETQLMYK--------W-AKPKICSEDLEGAVKLPASGVKTHCPPCNPGFFKTNNS---TCQPCPYGSYSNG--SDCTRCPAGTEPAVGFEYKWW--NTLPTNMETTVLSGINFEYKGMTGWEVAGDHIYTAAGASDNDFMILTLVVPGFRPPQSVMADTENKEVARITFVFETLCSVNCELYF---MVGVNSRTNTPVETWKGSKGKQSYTYIIEENTTTSFTWAFQ-------------------RTTFH---EASRKYTNDVAKIYSINVTNVMNGVASYCRPC--ALEASDVGSSCTSCPAGYYIDRDSGTCHSCPTNTILKAHQPYGVQACVPCGPGTKNNKIHSLC-YNDCTF 660 The following BLAST results are available for this feature:
BLAST of TCONS_00054970 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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