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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054974 ID=TCONS_00054974|Name=TCONS_00054974|organism=Clytia hemisphaerica|type=transcript|length=1033bp
gaaaaattagtgaagaaataagaaaactAATACAGGTTATAATCAAATGC
TAATCATAATAATTCGTAATTGATAAAATGAAGATTGACTGACCAAAACA
CTGCATTCATGATCATGTGACTACAAGTTTTGAATTCTGGAACATCTGAT
GGTTGGGATCCATTTTACCGTAATTATCGCAAATCACAACTGGCTTGATC
GTAGCTTTTCCCGTAGTGAATGCCAGCTTCGTTCCCACATATCCACGTGC
TTGGACGATGACAGTATCTCGATTCCATCGACTGTAATCCCAATAGGACT
TATACTCCTTGAGATACAATGGACACCTTATGTAAAGCTTTCCCCACAAA
CATGGTTGAAACAGTTTCCAATCCTCTGGATGGTTGTCCATTCTGTCTCC
ACAGAACTTATTCTTCAAACTTGGCTTACATTTgaTAACGAGACTGTCCT
GACCTGAGCAATGGAGGAACAATGATCGACATTTGTTGACTTTTTCGTCA
TTTATTGACTTGTACTGCGAAACTTGGTTATGCTTACTGAATTTAAACAA
TCGCATCATCAAGACATTGCCTCCAACTAGATATAAACATTTGAACgcag
tcgctttcgctttcgttttcaagcaaaagATTTCCCAGCATCCTCTCCGC
GAACTTTGTAGATAAAAGATTCCATCGTCCAATTCGCGAAATGGTTGTAC
GATTCGAATCCTTTCGGAAAAATTTTACACACAATGAAGTCAGAATTCgg
aatgacgtcacaaaatcgGACAGCTGTCCAAATTTGATCGTTACTTTCAT
CCGCGCAGAATAAGTTTGTGATATCTGGTTTGCAGGCTTGAATGACGTAG
TTAATGTTTTGTTTGGGTGATGCAACACTGAACTGATCTTTCTTGACTAG
CCAGTAGACCTTGTACAAATTTTGACAAGTGACGTTGTCCCTGTCACGCT
GGACTTTCAACAATGCAGTCAGATCTAAAAATACATAATGAAAATATTAT
TACCTACTATCCATGCACAACAATTTTACATTT Run BLAST on NCBI transcript from alignment at scaffold_247:247988..253919- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054974 ID=TCONS_00054974|Name=TCONS_00054974|organism=Clytia hemisphaerica|type=transcript|length=5932bp|location=Sequence derived from alignment at scaffold_247:247988..253919- (Clytia hemisphaerica)
GAAAAATTAGTGAAGAAATAAGAAAACTAATACAGGTTATAATCAAATGC
TAATCATAATAATTCGTAATTGATAAAATGAAGATTGACTGACCAAAACA
CTGCATTCATGATCATGTGACTACAAGTTTTGAATTCTGGAACATCTGAT
GGTTGGGATCCATTTTACCGTAATTATCGCAAATCACAACTGGCTTGATC
GTAGCTTTTCCCGTAGTGAATGCCAGCTTCGTTCCCACATATCCACGTGC
TTGGACGATGACAGTATCTCGATTCCATCGACTGTAATCCCAATAGGACT
TATACTCCTTGAGATACAATGGACACCTTATGTAAAGCTTTCCCCACAAA
CATGGTTGAAACAGTTTCCAATCCTCTGGATGGTTGTCCATTCTGTCTCC
ACAGAACTTATTCTTCAAACTTGGCTTACATTTGTAAGTAGAGATTGTTG
GGTTTTGAGTGAAATTTTGTAGTTGGTTTGAGTGGATGTATGCAGACAGT
TTATAAATATCTTGACAAGCTGTTGGTAGGGATATCTGTCCTGAAAAGAA
AAGAAGCGGGGCTCAGCTGTTTAGATTACACCATTGCTTCAAAACATTTT
TAGACAGTATAGTAGTCTACTTATAATAATGGAAAGAAAAAATAGTCCTT
CTTTTCATTACTTTTACGAAATCATAAATTTCTTTGATGATTTCCCAAAT
AATTTCGAACAGGCTTTTCTATATGATGTGTGTTTAGAGTGGGAATAAGT
TAGCTGACGTGTTGTAAGGGTTTTGAGTTAAATCTTTGCTGAAAACGAAT
GGGGCAGAATTAGTACGTAAATAAAGATTGTTTTTATTTCTTCACAACTC
GACCAATTTTTTTTTAGGATAACGAGACTGTCCTGACCTGAGCAATGGAG
GAACAATGATCGACATTTGTTGACTTTTTCGTCATTTATTGACTTGTACT
GGTAAGAGCCATAGATTTGTAAAGTANATTTTTCATCATTTATTGACTTG
TACTGGTAAGAGCCATAGATTTATAAAGTACTCTACCCCCGGGGGGGGGG
TACTACCCTTGTCGACCGACGGGGGTGCTCCGCTGAGATTTGAAAAATGG
ATCCTACGTGGGACTCGAAATTTGCGAAAAAAGTGACCCCGAGGGACTGA
TTTTTCTATTTTGGTGTTTTTGCGACCCTACCTGGGACTCGTGGAGGTTA
AAAAAGGTACCCTGACCAGCGGAGCATCCCCGTAGCCCATTTTGCCCTAG
TCCCCCCCCCCCCGGGACTGTACCAGTACTGGATATCGTGCTTTTGCTGA
AAAGTGTGTCGAGGTTAAAAAAAAAATTTCAGCGCTTGACCAATCAGAAG
CTTCGCGGTTTTTCGAAAACAATAGCAGCAATACTTTTTGCGATATTCAC
TTATTTTTGCTTGGAAGAGCTTAAAGCACGCCATCTAGCCCTTCAGACTT
TATAAATCTATGGTAAGAGCCCTTCAACAAGATCTCCAACATTTGTAATT
TGAAGCCCCTGTTCGAACCTTTATTTAAAATCTTGCCAAGTTTATTATAG
TTGACCTGTATAGTCGTGATGACGTGACGATAAAGGGAAGTCTTTTTTGC
TGTCCATCAGAATAGGTCGAATTCCTACTGTCATTTATTTACTTATTGAC
TATTTGTGCTTTTTAAGCGAACATTTTTTGATAATGTGCCTAAGATACAT
ACGAGAACTGACATTATTTCGGAAGGAACTTGGTAGCTCCTATGCATACG
TGTCTCTATGGGAATAAAAGTTTCAATTGGCTGCTTTGAAAATATAACCA
AATTCGTATAGTATTTCTCATGCAGTTTCTCATGCAGAAAGTTTTCTGGC
TCTCCAAAGACTCCTCCTAAGACTTAAACTAAAGAGCTCAAAATATTGTA
AGGTTTCTTTGACCGGTTATCGTTGTAAAATAATTTAGCTAATAATCATT
ACCTAAAATAGAGCAATTAACCAAAGCCAACATTATTCCCAATGTCATAT
AAAGATGATAACCCAATACTTGAAAATCCATCACGAACTAGATTCTCACT
CAACATTGACTTTTTTGCAGCAGCCAAAACCAAGAACTCCACCCAAGTTT
TCCAGTATAACTTATGACAGTCACTAGATTTTCCTTGTTGACTAGGTGGC
TTTAGATGTTTAGTTGTTCCCTTTTATAAGGCTGCAAATCCTTTCAATTC
TTCGAAAGAGGTACACGTGTCCAAGTTCGTAGAAAATTATTGATTGAGAA
CTTATTCATCATGAGATCGACATACACACCCAAATTCGAAGAAAATTATC
TTGAAAATGACACAAGTTAAAATTAAAATGTGTCACCATTATCATATTTC
AAAGTCATTATCCCTCAGCCTTACACACTTTTTTCACCATTTTTGGGAGT
AACGACTATTACGTTACGACATTGTTTTCCGAGATTTTGACTGTTAAGCA
TTTTTTTTCTTCAACGTAATGCTAATTGATTTTGTCTGGTAAATTTCATA
ATTTGAAGTGTCAGTTTTGAAAAACTTAGTCATAAAGATTTGTAAAATAA
AACTGCATGTATTAGCATGTATTATTAATTTTTTTGATTAATATTCTTAG
TTTGCCAAAGGCTTGAAATAGCGATTTCAAATGGGTCGGACAAAATCATG
ATTTTTGGGTCGGACAAGAAGCTATTTGGGTCGTACGTCCGATCGTTATC
TCAAGCCTTGTTTGCTGTTTTAATATATGTAACTGGGGTTAAAATTCAAA
TTCTTGGCTGGCTCAATATTCTCAAAAGTTAAATTTCAGCCAATTTTTAC
TCTTTTGTGGATTTTTAAAACTCTCAAAAATTCTTGCTCTTTACGGTGAG
GGGTGGAGAGATTTGGTGGAGTTTTGTTCATTCAAATGTAGCCTCAAGTC
ACCTCTCCCTATGTTCTTTCAGCAAAACTGAACAGTCATCAACAATACCT
TCACGTGGGGTATTATACAAGGTCAACCTGTTCAGCCTGTAAATCCTGAG
CTTTTAGCTTTGTCCACCTTTTAGACGTACCTTATAAACAGTTCAAAGAA
TATTTCAGAGTTTTCATACACTAATCACATGAGAGCGTGGGAGTTGAAGG
GAAGGTACAAACATTTTTACTCGTTTATTCTTACCATCATTCTGAATGTT
TTTTGGACGTTCCGTTATCGGTTTTTTGATGCTGCACTTGCCATTTCCTC
GACCTCAGTCGATTTTTTTTTTGCGATTCAGCAAAATTTCTAACATGCCT
TAGTTTTTACATTTCCAAAGAAAGCGGTCGAAAAAGTGACCAACCTAGAA
CCCGGGACCCTTTGACTCAAGCCGCTCCTTTATTTCAAGATGTCCTGGGT
ACTAAGTTGTGAAATGTGATTGATAAGTGATGGTGCATTTTTTACTCATT
CGTATTTTCTGCGAAACAAAAGGTTATTCATGTGACTTTTGTCAGTGTGA
TGAATACATGGAAAAGAATCTTGTGACTTTTTCAATTATCTTAATTTTGG
TGGTTCGATTTACTGAAGAATTTGGAAAGTTGTTTTTTTGCGATATGAAT
CATTCAAACGGAAAGGGTACATTACATTACTGCTGTTAGGTTGTAGTCAC
TCATCATTGGTTCAATAGGTCATTGGGTTTACCTCGAGTTTACCTCTTGA
TTATTTTCTGAGATGACCGTCTTCGGATATTCTTAGCTTTCTGAGTTTAA
GCCTAAAACGTTCTTGAATTATTCTTATTTTCATCATTGTGAGTATTTTT
GTGAGCATTATTTTCCTAACAAATTGGGTGTTTAGAGTCTAATAAAGCTT
TAATATGTTCTTAACCTGTTCTTAATATTTTGGCCATCGAAGCTGTAAGA
TAATTTTAGGATAATTATTTAAAAGATTTTTTTTAATTCTTCAGCGAAAC
TTGGTTATGCTTACTGAATTTAAACAATCGCATCATCAAGACATTGCCTC
CAACTAGATATAAACATTTGAACGCAGTCGCTTTCGCTTTCGTTTTCAAG
CAAAAGGTAACGTAGTTTTGAATGTTTTGGCTGAACAACCACGTCAGATC
GTCACATTCGCCATATCCCTATAAAGCAGAGAGTGATGTTGGCAGGATGG
ATGATCTGTTATGAGATAATCAGATCCAAAGACCTTTGACTTTATTGATG
TAATCTCATTAGCATTCTTGACATTTCCTTTTTTAATTAGATCTTGTCCC
TAATCACCATACCACTCTTTAGAGCTTTAATTACTGCTTGACTCTTTAGA
AAACTTCTTGCTGAGGGATTAATGGATTGGTTTCGAGACGAGATTTTATA
CGGTCTTAATTAGGGTTAAGGTTACAGACGCCATATCGAGACGAGTTTGA
TTGAAATTGCAAAGTCGGTTATAATTTATTGAAATGAGTAAATACATGTG
CTTAAAGTAAAGAATAATTATAAAAATTTTGGGTTGACATACGGTTTAAA
AATAATGAAATATATATTAAGGTTATATAACAGCAAATAAAATATTTAAT
TGAAATAGCCCAATAAAATACCTCAAAGCTATAAACTTATGAAAAGGCAA
TGCAAAAAAGATATGCATGATTGTCTCAATCCAAGGCTGATTTAAATTGT
CTTTGAGAAAACTTTGAGAAAGAATTCGTTATAAGTGGTCTTAAGCATTT
TCCTGCCTACGATGTTAGATACAGTGTGTCCCAAAAAAAGCGGACAAACT
TTTACATAAAGTAAAATCTTCAAAACTCGTTATCTGAGAACTTGGCTTAG
AATGATTGAAATAAAATAACAATACTCTGTTTAATCAATAGATAGTCCCA
AAATGATTGAATGTTTTTGAGCTTGAAATGGGCTCTTCCAGAAAAAATCC
GTTCATGGGGGGTGGAGGATATATTATTTTTTTCATGAATTACCCCTGGA
TATTTTGATTTTTAACCCCTTGGACACGGGTTATACCCCTGGACAAACAT
CAAATCAACCCCGTGGACACAAAAAATTACCCCCTGGACATTGCATTTTT
TTGGTATTTTTTAAATACCCCTGGACAATTCATCCTCCACCCCCCATGAA
CGGATTTTTTCTGGAAGAGCCCAATATCAGTTATACAAGTCATAAAATTC
TACATAAACTATGCGGATTTTACTTCATTTAAAATTTGCCCTTTTTTTTG
GGATACAATGAAGTTGGTCTCTTAGCAGGATTAAAAAACTAAGTGTAATG
ATACGAATATAAAATAAAATGTTGCTCTTGATTTATCGTCAAGAATCTTT
TGGTTGTTTCATATTCATTAAGTCGGGTCCAGTTCATGCGTCTTACAGAC
CTTCAATAATGGAAAACTCCCAATCTTGTTTTGACTGTGGAAAAAAATTG
CGATATGGGATTAAAATTTATTCTTTTAAAGAATTTTGAGGATCAGGAGT
CTCCTTTGATCGTCTGTAAGATTCTGTTCGCTTTTAGTTGAATAATTGAT
GGCTTGGCCGGACAAGTTTGATTCTCGGACATCTGTAGAAAGGTGTGATG
ACCAAACTTTTTGTATTCATTTGTACAGATTTCCCAGCATCCTCTCCGCG
AACTTTGTAGATAAAAGATTCCATCGTCCAATTCGCGAAATGGTTGTACG
ATTCGAATCCTTTCGGAAAAATTTTACACACAATGAAGTCAGAATTCGGA
ATGACGTCACAAAATCGGACAGCTGTCCAAATTTGATCGTTACTTTCATC
CGCGCAGAATAAGTTTGTGATATCTGGTTTGCAGGCTTGAATGACGTAGT
TAATGTTTTGTTTGGGTGATGCAACACTGAACTGATCTTTCTTGACTAGC
CAGTAGACCTTGTACAAATTTTGACAAGTGACGTTGTCCCTGTCACGCTG
GACTTTCAACAATGCAGTCAGATCTAAAAATACATAATGAAAATATTATT
ACCTACTATCCATGCACAACAATTTTACATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054974-exon-scaffold_247-1575043694:253487..253919 | TCONS_00054974-exon-scaffold_247-1575043694:253487..253919 | Clytia hemisphaerica | exon |
| TCONS_00054974-exon-scaffold_247-1575043694:252969..253052 | TCONS_00054974-exon-scaffold_247-1575043694:252969..253052 | Clytia hemisphaerica | exon |
| TCONS_00054974-exon-scaffold_247-1575043694:249914..250025 | TCONS_00054974-exon-scaffold_247-1575043694:249914..250025 | Clytia hemisphaerica | exon |
| TCONS_00054974-exon-scaffold_247-1575043694:247988..248391 | TCONS_00054974-exon-scaffold_247-1575043694:247988..248391 | Clytia hemisphaerica | exon |
| TCONS_00054974-exon-scaffold_247-1510915933:253487..253919 | TCONS_00054974-exon-scaffold_247-1510915933:253487..253919 | Clytia hemisphaerica | exon |
| TCONS_00054974-exon-scaffold_247-1510915933:252969..253052 | TCONS_00054974-exon-scaffold_247-1510915933:252969..253052 | Clytia hemisphaerica | exon |
| TCONS_00054974-exon-scaffold_247-1510915933:249914..250025 | TCONS_00054974-exon-scaffold_247-1510915933:249914..250025 | Clytia hemisphaerica | exon |
| TCONS_00054974-exon-scaffold_247-1510915933:247988..248391 | TCONS_00054974-exon-scaffold_247-1510915933:247988..248391 | Clytia hemisphaerica | exon |
| TCONS_00054974-exon-scaffold_247-1491911889:253487..253919 | TCONS_00054974-exon-scaffold_247-1491911889:253487..253919 | Clytia hemisphaerica | exon |
| TCONS_00054974-exon-scaffold_247-1491911889:252969..253052 | TCONS_00054974-exon-scaffold_247-1491911889:252969..253052 | Clytia hemisphaerica | exon |
| TCONS_00054974-exon-scaffold_247-1491911889:249914..250025 | TCONS_00054974-exon-scaffold_247-1491911889:249914..250025 | Clytia hemisphaerica | exon |
| TCONS_00054974-exon-scaffold_247-1491911889:247988..248391 | TCONS_00054974-exon-scaffold_247-1491911889:247988..248391 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_247 | supercontig | scaffold_247:247988..253919 - |
Blast
The following BLAST results are available for this feature:
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