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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054976 ID=TCONS_00054976|Name=TCONS_00054976|organism=Clytia hemisphaerica|type=transcript|length=917bp
GTTTTTACCCCCGTCTAAGAAACTTTCGATCGGCGTAAAGCAtgtcataa
attttaaaatcattccTTTCACCAAACCATCGCAGAGAAGAGCAGCCACG
AAAGCTCCAAAGTTCTCAAAATGGTCGCACAAAAGCCAAGAAAATCCAAG
AAGAAGTCTACTCTCATCTTCAACATTGATTGCTCCCTTCCAGTTGAAGA
TGGAATCATGAAAGTTGATGACTTGGGTCACCTTCCCTAAGAAATATGGC
ATTCgccatttcttttattttagaaaacCTTCTTGTCGAGCAAGATTAAA
GTTGAAGGAAAATTGAACAACTTAGAACAAATCAGTTTAGATgtcaataa
aaacaaagttaccATTACTGCTGACCGACAGTTTTCAAAACGTTACTTGA
AGTACTTGACCAAGAAATACTTGAAGAAAAACAACCTTCGTGACTGGCTT
CGAGTTGTGGCTTCAACACACACCGACTACGAATTGAGATACTTCCAAAT
CAACAATGATGAAGAGGAAGACGACGATGATAATGAATAAATTAAAGATC
TTTATTTAAGACAACAAAAGATTGTTTTCTTTCATGTCTCCAGATACACA
CACTATAATCTCAGTTTTATGNATTATTTATGACAACAAAAGATTGTTTT
CTTTCATGTCTCAGATACACACACTATAATCTCAGTTTTATGCTGTAATC
CTGGGAACATCTAGGTTAGAGTctactgaactttgctttctaacGATTTT
AATGGGAGGTCTGATAACACACAGAATACTTCAGATAATGATGAGAGCAT
GAAGGTTGGCAGGGTTGATCCTTGGAGGTTTTAAAACTTGATTTAAAGCA
AGGAAACTTtctggagaaaaacaaataaaactcGGATCTAAAGACCTTTT
TCTTTCATATGTGGGAg Run BLAST on NCBI transcript from alignment at scaffold_247:273341..276682- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054976 ID=TCONS_00054976|Name=TCONS_00054976|organism=Clytia hemisphaerica|type=transcript|length=3342bp|location=Sequence derived from alignment at scaffold_247:273341..276682- (Clytia hemisphaerica)
GTTTTTACCCCCGTCTAAGAAACTTTCGATCGGCGTAAAGCATGTCATAA
ATTTTAAAATCATTCCTTTCACCAAACCATCGCAGAGAAGAGCAGCCACG
AAAGCTCCAAAGTTCTCAAAATGGTCGCACAAGTAAGTTAACTTCCAGCA
TTTTCTCTTTGATTAACATACCTTGAAATTTGTTTGGGATTGTGAAGGAT
GTGATGAATATTCTTTTTTCCCCATCTTATCGACTGTGGTGAAAAACATT
GCTGAATTATAAGCCAGATATTCTGATCCTGTCCCCTAAGCTAAGTTTCA
AGAGCTTTACTTTTCCATTCTTGAGTGGATATGATGTCTTATCTTTTTTC
CCCAGCTTATCGATTATGCTGATTAATGCTGTAATAAAAAGCCAAATTTT
CTCTTTGATTTACATACCTTGAAATTTGTTTGGAATTGTGAAGGATGTGA
TGAATGTTCTTTTTTCCCCATCTTATCGACTGTGGTGAAAAACATTGCTG
AATTATAAGCCAGATATTCTGATCCTGTCACCTAAGTTTCAAGAACTTCA
GTGCTGCAAATAACGGCTGGTGACCGGTAATTACCGGTCATTTTGTAGTT
TCTACCGGTCATTCTGAGGCTCAGTTTTTCATTTTGTCCGGTTAAAATTT
GAAGATTAGANCTTTACTTTTCCATTCTTGAGTGGATATGATGTTTATCT
TTTTTCCCCAGCTTATCGACTATGCTGATTAATGCTGTAATAAAAAGCCA
ACTTTTCTGATCCATCCATGACATAAATTTAGGTCTTAGAGTTTGTTCGG
TCATGTTAATGTTGGATTATAAACTCGAGCAAGACAACAATCCTCCTGAA
CAAACCATAGATTTTTTGTCTTTTTGCGTTAAGCTTTTCCAAGCAAAAGG
AAGTGAATATCGTAAAAAAGAAATGAATATTGCAAAAATGTTTGCTAGCA
TGCTAGGTTTTCGAAAACTTGTAAAACTTCTTATTGGTCAAGCGCTGAAA
TTGTAATGTCATGTGACCTGATGATAGGAGCTCTTACCAAACCACAGCAC
ACTTTTCAGCAAAGCATGTCATCTACGGGTTATCTTTAGAATGGCTAAGT
AAGATAGGTTTCTTGCTTTATAAGAAACTGCATATTGTATTGATTTAATT
TTAGTGTTGCCAATGATGACTAGCACAGGCTAGATTTGCTAATCCCAGCT
CTCTGAGAACATTCTGATGAGAAAAGCAACTGAGGCAATTTCTTGATATT
ATTTTGTTCTCTGAAACCATGTTGTTTATATGAGGTGGTTGTAAAGAAAT
GTTTTTCCTGTTTAGAAGCCAAGAAAATCCAAGAAGAAGTCTACTCTCAT
CTTCAACATTGATTGCTCCCTTCCAGTTGAAGATGGAATCATGAAAGTTG
ATGACTTGGTAAGTTTACATTATAAGTGTGTATTTTGAATTTGAAAACTG
CACTTTCTGAAGCTTTTCAAAAAGGCTTTGATTTAGTGGTTATGGGGAAA
GTCAAATGGTTTTTGCATGACTTTTGAAGTCTACTTTGTTCACTACATGC
ACATACTGCCTTTCTCTGCTTAATCATGAGCAGACTATTCTAAACATTTT
CATCTTAGGGTCACCTTCCCTAAGAAATATGGCATTCGCCATTTCTTTTA
TTTTAGAAAACCTTCTTGTCGAGCAAGATTAAAGTTGAAGGAAAATTGAA
CAACTTAGAACAAATCAGTTTAGATGTCAATAAAAACAAAGTTACCATTA
CTGCTGACCGACAGTTTTCAAAACGGTAAGATGAATTTTATTCATAAGGA
AAACTATTTCTATTTATGCATTCATATTATATATCCTGGGCTTAATTCAT
GTGAGATGATGATTTCATGAACCACAGACCTGTTCTGAATTTCCGTGTGG
ACAGAGTTCATGCACCACCAACTGATCACATAGTTCTGAAAGAACGAAAC
AAATTGAATTTCCTGTTTAAAATAAGACTGATTGGTATGAAATACCTCAA
GGGGCTGGATTATGCTATTTTCTGAATCGCCTAAAATAAGGAAAGACTTG
TAAGGGAACAAAAACTTTCGAATTTATTATTGGCATTGGGCTGATACAGG
GGTGGGGGTCCAAATACATACTGATAAAAAAAAACAAGTATTGGGACATC
TTTTCAGTCATTTCTTTCTTATTCCGTCCACAAACTACACTGAAAGCATA
TAATTCACTCTTAGGTGCCAAATAAACGGGGGTTGGAAAAATGTTTCAAA
TTAAATATACTGGAGGTTGGAAATCGACCTTAAAAAGCCCTAAAAAGGGT
CAATAGACAAAATTTTAGGCTTTTTTAGAGTAAAACAAGGAACTTTCCTT
TTGGTAGCTGAAAATTTTTTCAAAAATTAATAAACGGGAGTCCTAATAAG
GTCCGGGGAAGTTTTATTTGGCACCTAAGAGTGACTTGCTTTCACCTGTG
CAACTTACAATATATCATTTCCGTCTTGCCAGTAAGAGAGATTTTGGTTC
AAATGACCATCTAGTCCTTAGGTTTCCGACCATATTCACAAAACCTACTC
TCAGGTACCTTCCCCCCTCCCCCATTAATTAATTTTTCAAAAGTTTTACA
ACTATCAAGCAAATTGAGCCTATTTTTATGTCTTAATTAAAAAGTGAGAT
GATGATTTCATGAACCACAGACCTGTTCTGAATATCCATGTGGACAGAGT
TCATGCACCACCAACTGATCATTTAAACAACTTTGATGCCTAAATCTGAC
AAAAGAGGCTTGTTAGCAGATTACTTTTGAAGACTTTCTCATTAAACATG
TTTCTATTCCTTTTTAGTTACTTGAAGTACTTGACCAAGAAATACTTGAA
GAAAAACAACCTTCGTGACTGGCTTCGAGTTGTGGCTTCAACACACACCG
ACTACGAATTGAGATACTTCCAAATCAACAATGATGAAGAGGAAGACGAC
GATGATAATGAATAAATTAAAGATCTTTATTTAAGACAACAAAAGATTGT
TTTCTTTCATGTCTCCAGATACACACACTATAATCTCAGTTTTATGNATT
ATTTATGACAACAAAAGATTGTTTTCTTTCATGTCTCAGATACACACACT
ATAATCTCAGTTTTATGCTGTAATCCTGGGAACATCTAGGTTAGAGTCTA
CTGAACTTTGCTTTCTAACGATTTTAATGGGAGGTCTGATAACACACAGA
ATACTTCAGATAATGATGAGAGCATGAAGGTTGGCAGGGTTGATCCTTGG
AGGTTTTAAAACTTGATTTAAAGCAAGGAAACTTTCTGGAGAAAAACAAA
TAAAACTCGGATCTAAAGACCTTTTTCTTTCATATGTGGGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054976-exon-scaffold_247-1575043694:276551..276682 | TCONS_00054976-exon-scaffold_247-1575043694:276551..276682 | Clytia hemisphaerica | exon |
| TCONS_00054976-exon-scaffold_247-1575043694:275275..275367 | TCONS_00054976-exon-scaffold_247-1575043694:275275..275367 | Clytia hemisphaerica | exon |
| TCONS_00054976-exon-scaffold_247-1575043694:274908..275074 | TCONS_00054976-exon-scaffold_247-1575043694:274908..275074 | Clytia hemisphaerica | exon |
| TCONS_00054976-exon-scaffold_247-1575043694:273341..273865 | TCONS_00054976-exon-scaffold_247-1575043694:273341..273865 | Clytia hemisphaerica | exon |
| TCONS_00054976-exon-scaffold_247-1510915933:276551..276682 | TCONS_00054976-exon-scaffold_247-1510915933:276551..276682 | Clytia hemisphaerica | exon |
| TCONS_00054976-exon-scaffold_247-1510915933:275275..275367 | TCONS_00054976-exon-scaffold_247-1510915933:275275..275367 | Clytia hemisphaerica | exon |
| TCONS_00054976-exon-scaffold_247-1510915933:274908..275074 | TCONS_00054976-exon-scaffold_247-1510915933:274908..275074 | Clytia hemisphaerica | exon |
| TCONS_00054976-exon-scaffold_247-1510915933:273341..273865 | TCONS_00054976-exon-scaffold_247-1510915933:273341..273865 | Clytia hemisphaerica | exon |
| TCONS_00054976-exon-scaffold_247-1491911889:276551..276682 | TCONS_00054976-exon-scaffold_247-1491911889:276551..276682 | Clytia hemisphaerica | exon |
| TCONS_00054976-exon-scaffold_247-1491911889:275275..275367 | TCONS_00054976-exon-scaffold_247-1491911889:275275..275367 | Clytia hemisphaerica | exon |
| TCONS_00054976-exon-scaffold_247-1491911889:274908..275074 | TCONS_00054976-exon-scaffold_247-1491911889:274908..275074 | Clytia hemisphaerica | exon |
| TCONS_00054976-exon-scaffold_247-1491911889:273341..273865 | TCONS_00054976-exon-scaffold_247-1491911889:273341..273865 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_247 | supercontig | scaffold_247:273341..276682 - |
Blast
BLAST of TCONS_00054976 vs. Swiss-Prot (Human)
Match: RL22L (60S ribosomal protein L22-like 1 OS=Homo sapiens GN=RPL22L1 PE=1 SV=2) HSP 1 Score: 77.411 bits (189), Expect = 1.946e-17 Identity = 69/128 (53.91%), Postives = 83/128 (64.84%), Query Frame = 1
Query: 121 MVAQKPRKSKKKSTLIFNIDCSLPVEDGIMKVDDLGHLP*EIWHSPFLLF*KTFLSSKIKVEGKLNNLEQI-SLDVNKNKVTITADRQFSXXXXXXXXXXXXXXXXXXDWLRVVASTHTDYELRYFQI 501
M QK RK K+ ST FN+D + PVEDGI D G+ + FL K+KV GK NL + ++ KNK+T+ +++QFSKRYLKYLTKKYLKKNNLRDWLRVVAS YELRYFQI
Sbjct: 1 MAPQKDRKPKR-STWRFNLDLTHPVEDGIF---DSGNF-------------EQFLREKVKVNGKTGNLGNVVHIERFKNKITVVSEKQFSKRYLKYLTKKYLKKNNLRDWLRVVASDKETYELRYFQI 111
The following BLAST results are available for this feature:
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