TCONS_00054984 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054984
Unique NameTCONS_00054984
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length709

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054984 ID=TCONS_00054984|Name=TCONS_00054984|organism=Clytia hemisphaerica|type=transcript|length=709bp
agaaatcagaaaAGCAGTTACCCGTTTGAAAAACAATGCCCCTGGAGAAA
CTGGGATAACCTCTCAAATGTTCAAATCGATAGTAGAGGACCCAGAAACT
TTTACACTATTGAGAAATGTTGTTACTGAGCTTTggaacactgaaaatcc
cccatCTGAATGGGATATCGGACTACTTTAAATATTACCAAAGAAAGGTG
ACCTGAGTAAGCCTGGTAATTATTGCGGTATTATGTTGCTCGAGGTATCC
TATAAAATCGTAGCTATTATCATTCATGAACGACTTCAACCAATCGTTAA
TTCAATTGACCACGAATCACAATGCGGTTTCCGTCCCGGAAGAGGATGTC
AAGATGCAATATTCACAGTCAAACTTGCTATGAAAAAAAGGCGTGAACAC
AACTCCGAAACATGGATCTTATTCTTAGACTTAGTGAAAGCCTTTGACCG
GGTTCCTAGAGAACTTTTATGGGGGGTACTTGAAAAATTTGGTGTACCTC
TCAAAATTGTCAGAATTTTAAAATCgcttcatcaaaatttcaaggtgaAC
TTTGAAGTAGATAATGTTTCTCACTCTATTAACTGTACCATTGGTGTTAA
GCAAGGGAACATTTTAGGTCCCGTGCTATTCGTTATGTATATTGCAGCCA
TTATGATCACATGGCGTAAGCGTTATGATCGACCCTTGTGCATCTTTCGT
ACAAAAAAT
Run BLAST on NCBI

protein sequence of TCONS_00054984-protein

>TCONS_00054984-protein ID=TCONS_00054984-protein|Name=TCONS_00054984-protein|organism=Clytia hemisphaerica|type=polypeptide|length=159bp
MLLEVSYKIVAIIIHERLQPIVNSIDHESQCGFRPGRGCQDAIFTVKLAM
KKRREHNSETWILFLDLVKAFDRVPRELLWGVLEKFGVPLKIVRILKSLH
QNFKVNFEVDNVSHSINCTIGVKQGNILGPVLFVMYIAAIMITWRKRYDR
PLCIFRTKN
Run BLAST on NCBI

transcript from alignment at scaffold_247:155896..156604

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054984 ID=TCONS_00054984|Name=TCONS_00054984|organism=Clytia hemisphaerica|type=transcript|length=709bp|location=Sequence derived from alignment at scaffold_247:155896..156604 (Clytia hemisphaerica)
ATTTTTTGTACGAAAGATGCACAAGGGTCGATCATAACGCTTACGCCATG
TGATCATAATGGCTGCAATATACATAACGAATAGCACGGGACCTAAAATG
TTCCCTTGCTTAACACCAATGGTACAGTTAATAGAGTGAGAAACATTATC
TACTTCAAAGTtcaccttgaaattttgatgaagcGATTTTAAAATTCTGA
CAATTTTGAGAGGTACACCAAATTTTTCAAGTACCCCCCATAAAAGTTCT
CTAGGAACCCGGTCAAAGGCTTTCACTAAGTCTAAGAATAAGATCCATGT
TTCGGAGTTGTGTTCACGCCTTTTTTTCATAGCAAGTTTGACTGTGAATA
TTGCATCTTGACATCCTCTTCCGGGACGGAAACCGCATTGTGATTCGTGG
TCAATTGAATTAACGATTGGTTGAAGTCGTTCATGAATGATAATAGCTAC
GATTTTATAGGATACCTCGAGCAACATAATACCGCAATAATTACCAGGCT
TACTCAGGTCACCTTTCTTTGGTAATATTTAAAGTAGTCCGATATCCCAT
TCAGatgggggattttcagtgttccAAAGCTCAGTAACAACATTTCTCAA
TAGTGTAAAAGTTTCTGGGTCCTCTACTATCGATTTGAACATTTGAGAGG
TTATCCCAGTTTCTCCAGGGGCATTGTTTTTCAAACGGGTAACTGCTttt
ctgatttct

Coding sequence (CDS) from alignment at scaffold_247:155896..156604

>TCONS_00054984 ID=TCONS_00054984|Name=TCONS_00054984|organism=Clytia hemisphaerica|type=CDS|length=477bp|location=Sequence derived from alignment at scaffold_247:155896..156604 (Clytia hemisphaerica)
ATTTTTTGTACGAAAGATGCACAAGGGTCGATCATAACGCTTACGCCATG
TGATCATAATGGCTGCAATATACATAACGAATAGCACGGGACCTAAAATG
TTCCCTTGCTTAACACCAATGGTACAGTTAATAGAGTGAGAAACATTATC
TACTTCAAAGTtcaccttgaaattttgatgaagcGATTTTAAAATTCTGA
CAATTTTGAGAGGTACACCAAATTTTTCAAGTACCCCCCATAAAAGTTCT
CTAGGAACCCGGTCAAAGGCTTTCACTAAGTCTAAGAATAAGATCCATGT
TTCGGAGTTGTGTTCACGCCTTTTTTTCATAGCAAGTTTGACTGTGAATA
TTGCATCTTGACATCCTCTTCCGGGACGGAAACCGCATTGTGATTCGTGG
TCAATTGAATTAACGATTGGTTGAAGTCGTTCATGAATGATAATAGCTAC
GATTTTATAGGATACCTCGAGCAACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034644XLOC_034644Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054984-exon-scaffold_247-1491911889:155896..156604TCONS_00054984-exon-scaffold_247-1491911889:155896..156604Clytia hemisphaericaexon
TCONS_00054984-exon-scaffold_247-1510915933:155896..156604TCONS_00054984-exon-scaffold_247-1510915933:155896..156604Clytia hemisphaericaexon
TCONS_00054984-exon-scaffold_247-1575043694:155896..156604TCONS_00054984-exon-scaffold_247-1575043694:155896..156604Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054984-proteinTCONS_00054984-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_247supercontigscaffold_247:155896..156604 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.06433	0.899506	0.883734	0.785996	1.81806	1.51227	1.82449	1.36645	0.717514	0.740631	1.00642	0.425304	2.31232	1.07817	0.564072	0.518859	0.639192	0.982727	3.46965	7.81399	1.98951	2.4093	1.38305	0.887575	1.676	4.35139	0	0.20767	0	0.160478
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054984 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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