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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054985 ID=TCONS_00054985|Name=TCONS_00054985|organism=Clytia hemisphaerica|type=transcript|length=2741bp
AAATTAacaggttttgaaaacagtTTTAAATGCTCAAAGAAAGCTGTTTT
AGAGAAATGAAAACAGTGAcatcatttttatcaaaaatacaaagcaggtG
ATATTCCTTTTAACGCCAAGACTTTGCATCCTTTGATCActgaaaaaagt
aattttttaacccggaactccttaaaattcattggaacagccgaaaaccg
gcgtaaaaatGGGTTTCCTTAATTTTCTTTCACAGTTAACCAACTTAGTA
GTTGTTAAAATGTAATGTAGcctaatttcaaagaaaaaaattgtttcttg
TCCCTTGATGATAGAAATGTGCTGAAAAAGTGGTATTTTGGGATAACCCT
TTGGGAATGCATTATAGTTttttctgacgttttgtttattttgaatttag
ttttttctgttgatcagccaggtaggtccataatggtatcacttgttctt
taagaaataataaataatCAAGATTGGCAAAATGAAAGATCTTCAACCAG
AAACAGAGGAATCTGAAgttcttgaaaactttgaaTTAGCTGTGCAATTG
GTGAAATCACTCCCTCAAAAAGGTTCTTTTCAGCCATCCTATGCAGAAGC
AGCAAGAATATACAGTTATTTCAAGCAAGCAAAGTTTGGACCATGTAATA
TACCTAAACCAGGATTCTGGGATTACATAAACCGTGCTAAATGGGATGCT
TGGTCTGGCCTTGGTGACCTTCCACGCGAGAAAGCAATGCAAAATTATGT
TGATGAAATAAAGGTTCTCTTTGTCAGGGTGAAAGAACTTGAAGAATTCC
AAGAAAGAGAACATGAATTTGCTAAGTTTTTGATCCCTTTTTGCAAAGCA
AACCATATCCCAATGAGCCGAAAACTCATGGATATGGTGAAGAAAGAAGA
CAAAATGAATGACCATGTTGAAATGCCCAGCATTGTCTCAAGTCAGGCAA
ACATTTCAGTAAGTAATGGAGCAACTAAAACTGGAAATGATATATTAACA
GATGATGAAAGTGAATTAGAAACCAATGGTCATGAACATTCTATTCTCCT
TGAAAAAACACATGAAtcaaaaaatgtgaaatttgaATTGAATGAGGAGA
GTATACCAGAGGGTCCCTTGGGGGTGAGCAGTAATGAATCGATTGAGATT
GTGGAGCTCGATAAGAGTAAGGATGAAACAAGTAGTgatgaaaaagaaga
tgaagatgaagaagaggaAATATTTTGTGATCCACTTGATCCTTCAGAAA
TGCCAATGGAGAAAGAATCAGTTACTGAAAGCTCTCTAACAACAACTGAC
TCAGGAGTCACTTTCAACGAAACTGTTATAACAAACAAACCAGTCGTCAG
AAaaagatcaaaagttattgaatcTTCCTCTGATTCTCATGATCCTGTAT
CAAGAGAATTGAAGCAACCATACCATAAACCAAGAAGAGGACAATACAAA
AGAACTGGTTTCAGTAACGGAGGAATATCAAGGAGCTACCATGTGCGTCG
CCACAAGAGGTTGGATGAGAATAATGGGCGCGACAATGGTCATCGAAACA
ATGGAAACCATCACCATCAACATCAAAGATCACACCCGCCTGCAGGTACA
CATAGTGTATCCCACCCTTCACACTCAAGTAACCACCCATCACAACAGTC
TCAAGGTAACAATCCACCTAGTGATCACAGCGATAGCACTGACTCCTACG
TCAGCAGTGGCTCATACAGTAATGATACTATCGGACTTAAGATTGTAAAT
TCTCTTGAAAGAATGGAAGATAATATGCAAAGTATCATTGAGCGTTTGGA
TTCGATTGAGGAGACAGTAAAAGTTGTCACCAAACCCAAAGTACCATGGT
GGCAACAATACATGCCCTCAAAAACTATGATGATATGGACCTTTTGGCCT
ATTATTGTCAATATTCTCTTTTTCCTTTACTGGAAACGATTCAggagaca
aaaaattaaaaaatgttaaatttaaacaaatcaaatttaACATTCATATG
TAAAAATAGTATTATATGatttattttccaattaaggTTGTAGATAGATG
ATTTTGACAGTCTTTATTCAATACTCTTACATCACTTTAAATTATATCCT
acatttgacaaattttgacaaatttttcagaaatcatgTACATTTTTTgc
tccaaggttaaaaaaatccagtgggttttgtagtgcaatttttaaacatt
gaatttcgaatggggatgaatgaaatcaaagtaaattttgCAGTATGGCT
GACATTACGGGGTATTTTCTTATCAAGGACaagatttttgccaaatttcc
cAGTGTGACTGGGGTTCCAGTGGgactgtgacacaggggtgtattcttAG
AgatccattttattttattgcaaGTGTGACACGTACCTTGATGTCAATGA
ATAAACTCTCTTTGTTGTTATATTTTGTTTCATTCATATTCAgtcatata
ttttttcaatagatcttatcagagtttttaatttttcttaaaaagtgaag
gaattctattgtaataatcccgaaacaatcccacaatgcatcgctttttt
agaaaaatgttcacttcatttttttctgaattttcatttgattcttttta
aagtgatacacgttttttttattacaacacctaaaatttggctgagcctg
gatgtgcttattctTTTGGCAGTTTTCAGTctacaatgttcttaaatgcg
ttcttaatttttcagactactctaaatcgacaatatcatgc Run BLAST on NCBI protein sequence of TCONS_00054985-protein >TCONS_00054985-protein ID=TCONS_00054985-protein|Name=TCONS_00054985-protein|organism=Clytia hemisphaerica|type=polypeptide|length=495bp
MKDLQPETEESEVLENFELAVQLVKSLPQKGSFQPSYAEAARIYSYFKQA
KFGPCNIPKPGFWDYINRAKWDAWSGLGDLPREKAMQNYVDEIKVLFVRV
KELEEFQEREHEFAKFLIPFCKANHIPMSRKLMDMVKKEDKMNDHVEMPS
IVSSQANISVSNGATKTGNDILTDDESELETNGHEHSILLEKTHESKNVK
FELNEESIPEGPLGVSSNESIEIVELDKSKDETSSDEKEDEDEEEEIFCD
PLDPSEMPMEKESVTESSLTTTDSGVTFNETVITNKPVVRKRSKVIESSS
DSHDPVSRELKQPYHKPRRGQYKRTGFSNGGISRSYHVRRHKRLDENNGR
DNGHRNNGNHHHQHQRSHPPAGTHSVSHPSHSSNHPSQQSQGNNPPSDHS
DSTDSYVSSGSYSNDTIGLKIVNSLERMEDNMQSIIERLDSIEETVKVVT
KPKVPWWQQYMPSKTMMIWTFWPIIVNILFFLYWKRFRRQKIKKC Run BLAST on NCBI transcript from alignment at scaffold_247:305728..308468 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054985 ID=TCONS_00054985|Name=TCONS_00054985|organism=Clytia hemisphaerica|type=transcript|length=2741bp|location=Sequence derived from alignment at scaffold_247:305728..308468 (Clytia hemisphaerica)
gcatgatattgtcgatttagagtagtctgaaaaattaagaacgcatttaa
gaacattgtagACTGAAAACTGCCAAAagaataagcacatccaggctcag
ccaaattttaggtgttgtaataaaaaaaacgtgtatcactttaaaaagaa
tcaaatgaaaattcagaaaaaaatgaagtgaacatttttctaaaaaagcg
atgcattgtgggattgtttcgggattattacaatagaattccttcacttt
ttaagaaaaattaaaaactctgataagatctattgaaaaaatatatgacT
GAATATGAATGAAACAAAATATAACAACAAAGAGAGTTTATTCATTGACA
TCAAGGTACGTGTCACACttgcaataaaataaaatggatcTCTaagaata
cacccctgtgtcacagtcCCACTGGAACCCCAGTCACACTgggaaatttg
gcaaaaatcttGTCCTTGATAAGAAAATACCCCGTAATGTCAGCCATACT
Gcaaaatttactttgatttcattcatccccattcgaaattcaatgtttaa
aaattgcactacaaaacccactggatttttttaaccttggagcAAAAAAT
GTAcatgatttctgaaaaatttgtcaaaatttgtcaaatgtAGGATATAA
TTTAAAGTGATGTAAGAGTATTGAATAAAGACTGTCAAAATCATCTATCT
ACAAccttaattggaaaataaatCATATAATACTATTTTTACATATGAAT
GTtaaatttgatttgtttaaatttaacattttttaattttttgtctccTG
AATCGTTTCCAGTAAAGGAAAAAGAGAATATTGACAATAATAGGCCAAAA
GGTCCATATCATCATAGTTTTTGAGGGCATGTATTGTTGCCACCATGGTA
CTTTGGGTTTGGTGACAACTTTTACTGTCTCCTCAATCGAATCCAAACGC
TCAATGATACTTTGCATATTATCTTCCATTCTTTCAAGAGAATTTACAAT
CTTAAGTCCGATAGTATCATTACTGTATGAGCCACTGCTGACGTAGGAGT
CAGTGCTATCGCTGTGATCACTAGGTGGATTGTTACCTTGAGACTGTTGT
GATGGGTGGTTACTTGAGTGTGAAGGGTGGGATACACTATGTGTACCTGC
AGGCGGGTGTGATCTTTGATGTTGATGGTGATGGTTTCCATTGTTTCGAT
GACCATTGTCGCGCCCATTATTCTCATCCAACCTCTTGTGGCGACGCACA
TGGTAGCTCCTTGATATTCCTCCGTTACTGAAACCAGTTCTTTTGTATTG
TCCTCTTCTTGGTTTATGGTATGGTTGCTTCAATTCTCTTGATACAGGAT
CATGAGAATCAGAGGAAgattcaataacttttgatctttTTCTGACGACT
GGTTTGTTTGTTATAACAGTTTCGTTGAAAGTGACTCCTGAGTCAGTTGT
TGTTAGAGAGCTTTCAGTAACTGATTCTTTCTCCATTGGCATTTCTGAAG
GATCAAGTGGATCACAAAATATTtcctcttcttcatcttcatcttctttt
tcatcACTACTTGTTTCATCCTTACTCTTATCGAGCTCCACAATCTCAAT
CGATTCATTACTGCTCACCCCCAAGGGACCCTCTGGTATACTCTCCTCAT
TCAATtcaaatttcacattttttgaTTCATGTGTTTTTTCAAGGAGAATA
GAATGTTCATGACCATTGGTTTCTAATTCACTTTCATCATCTGTTAATAT
ATCATTTCCAGTTTTAGTTGCTCCATTACTTACTGAAATGTTTGCCTGAC
TTGAGACAATGCTGGGCATTTCAACATGGTCATTCATTTTGTCTTCTTTC
TTCACCATATCCATGAGTTTTCGGCTCATTGGGATATGGTTTGCTTTGCA
AAAAGGGATCAAAAACTTAGCAAATTCATGTTCTCTTTCTTGGAATTCTT
CAAGTTCTTTCACCCTGACAAAGAGAACCTTTATTTCATCAACATAATTT
TGCATTGCTTTCTCGCGTGGAAGGTCACCAAGGCCAGACCAAGCATCCCA
TTTAGCACGGTTTATGTAATCCCAGAATCCTGGTTTAGGTATATTACATG
GTCCAAACTTTGCTTGCTTGAAATAACTGTATATTCTTGCTGCTTCTGCA
TAGGATGGCTGAAAAGAACCTTTTTGAGGGAGTGATTTCACCAATTGCAC
AGCTAAttcaaagttttcaagaacTTCAGATTCCTCTGTTTCTGGTTGAA
GATCTTTCATTTTGCCAATCTTGattatttattatttcttaaagaacaag
tgataccattatggacctacctggctgatcaacagaaaaaactaaattca
aaataaacaaaacgtcagaaaaAACTATAATGCATTCCCAAAGGGTTATC
CCAAAATACCACTTTTTCAGCACATTTCTATCATCAAGGGAcaagaaaca
atttttttctttgaaattaggCTACATTACATTTTAACAACTACTAAGTT
GGTTAACTGTGAAAGAAAATTAAGGAAACCCatttttacgccggttttcg
gctgttccaatgaattttaaggagttccgggttaaaaaattacttttttc
agTGATCAAAGGATGCAAAGTCTTGGCGTTAAAAGGAATATCacctgctt
tgtatttttgataaaaatgatgTCACTGTTTTCATTTCTCTAAAACAGCT
TTCTTTGAGCATTTAAAactgttttcaaaacctgtTAATTT Coding sequence (CDS) from alignment at scaffold_247:305728..308468 >TCONS_00054985 ID=TCONS_00054985|Name=TCONS_00054985|organism=Clytia hemisphaerica|type=CDS|length=1488bp|location=Sequence derived from alignment at scaffold_247:305728..308468 (Clytia hemisphaerica)
ttaacattttttaattttttgtctccTGAATCGTTTCCAGTAAAGGAAAA
AGAGAATATTGACAATAATAGGCCAAAAGGTCCATATCATCATAGTTTTT
GAGGGCATGTATTGTTGCCACCATGGTACTTTGGGTTTGGTGACAACTTT
TACTGTCTCCTCAATCGAATCCAAACGCTCAATGATACTTTGCATATTAT
CTTCCATTCTTTCAAGAGAATTTACAATCTTAAGTCCGATAGTATCATTA
CTGTATGAGCCACTGCTGACGTAGGAGTCAGTGCTATCGCTGTGATCACT
AGGTGGATTGTTACCTTGAGACTGTTGTGATGGGTGGTTACTTGAGTGTG
AAGGGTGGGATACACTATGTGTACCTGCAGGCGGGTGTGATCTTTGATGT
TGATGGTGATGGTTTCCATTGTTTCGATGACCATTGTCGCGCCCATTATT
CTCATCCAACCTCTTGTGGCGACGCACATGGTAGCTCCTTGATATTCCTC
CGTTACTGAAACCAGTTCTTTTGTATTGTCCTCTTCTTGGTTTATGGTAT
GGTTGCTTCAATTCTCTTGATACAGGATCATGAGAATCAGAGGAAgattc
aataacttttgatctttTTCTGACGACTGGTTTGTTTGTTATAACAGTTT
CGTTGAAAGTGACTCCTGAGTCAGTTGTTGTTAGAGAGCTTTCAGTAACT
GATTCTTTCTCCATTGGCATTTCTGAAGGATCAAGTGGATCACAAAATAT
TtcctcttcttcatcttcatcttctttttcatcACTACTTGTTTCATCCT
TACTCTTATCGAGCTCCACAATCTCAATCGATTCATTACTGCTCACCCCC
AAGGGACCCTCTGGTATACTCTCCTCATTCAATtcaaatttcacattttt
tgaTTCATGTGTTTTTTCAAGGAGAATAGAATGTTCATGACCATTGGTTT
CTAATTCACTTTCATCATCTGTTAATATATCATTTCCAGTTTTAGTTGCT
CCATTACTTACTGAAATGTTTGCCTGACTTGAGACAATGCTGGGCATTTC
AACATGGTCATTCATTTTGTCTTCTTTCTTCACCATATCCATGAGTTTTC
GGCTCATTGGGATATGGTTTGCTTTGCAAAAAGGGATCAAAAACTTAGCA
AATTCATGTTCTCTTTCTTGGAATTCTTCAAGTTCTTTCACCCTGACAAA
GAGAACCTTTATTTCATCAACATAATTTTGCATTGCTTTCTCGCGTGGAA
GGTCACCAAGGCCAGACCAAGCATCCCATTTAGCACGGTTTATGTAATCC
CAGAATCCTGGTTTAGGTATATTACATGGTCCAAACTTTGCTTGCTTGAA
ATAACTGTATATTCTTGCTGCTTCTGCATAGGATGGCTGAAAAGAACCTT
TTTGAGGGAGTGATTTCACCAATTGCACAGCTAAttcaaagttttcaaga
acTTCAGATTCCTCTGTTTCTGGTTGAAGATCTTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054985-exon-scaffold_247-1491911889:305728..308468 | TCONS_00054985-exon-scaffold_247-1491911889:305728..308468 | Clytia hemisphaerica | exon |
| TCONS_00054985-exon-scaffold_247-1510915933:305728..308468 | TCONS_00054985-exon-scaffold_247-1510915933:305728..308468 | Clytia hemisphaerica | exon |
| TCONS_00054985-exon-scaffold_247-1575043694:305728..308468 | TCONS_00054985-exon-scaffold_247-1575043694:305728..308468 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_247 | supercontig | scaffold_247:305728..308468 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000582 | Acyl-CoA-binding_protein |
| IPR014352 | FERM/acyl-CoA-bd_prot_3-hlx |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0000062 | fatty-acyl-CoA binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0000062 |
fatty-acyl-CoA binding |
Blast
BLAST of TCONS_00054985 vs. Swiss-Prot (Human)
Match: ACBD4 (Acyl-CoA-binding domain-containing protein 4 OS=Homo sapiens GN=ACBD4 PE=1 SV=2) HSP 1 Score: 112.079 bits (279), Expect = 1.011e-26 Identity = 46/94 (48.94%), Postives = 68/94 (72.34%), Query Frame = 2
Query: 500 ETEESEVLENFELAVQLVKSLPQKGSFQPSYAEAARIYSYFKQAKFGPCNIPKPGFWDYINRAKWDAWSGLGDLPREKAMQNYVDEIKVLFVRV 781
E+ E + + F+ AV ++++LP+ GS++PSY E R YSY+KQA GPC +P+PGFWD I R KWDAW+ LG + RE+AM Y+ E+K++ +V
Sbjct: 6 ESPEPDCQKQFQAAVSVIQNLPKNGSYRPSYEEMLRFYSYYKQATMGPCLVPRPGFWDPIGRYKWDAWNSLGKMSREEAMSAYITEMKLVAQKV 99
The following BLAST results are available for this feature:
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