TCONS_00054996 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054996
Unique NameTCONS_00054996
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length4319

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054996 ID=TCONS_00054996|Name=TCONS_00054996|organism=Clytia hemisphaerica|type=transcript|length=4319bp
CTCGTTGTTGATCCCTGCATTTTCATCCTTTAAACTTGACGCCCGCTGTG
TGTCATTCTTCGTGTACGGCAAATTCCTGACCAAAGTTTATTAGGGATGA
CTGTCGTGTCGGGTTTCAACTTATGATTAGTTTTTATATTCTTTTGTCAA
GCGTAGTATCATATTTTATCATATAGGCATTATATACTCTATATATTTTG
TAAGATTGCACAAAAAACGAAGCCTTTCGTACCCAAGTCTGTCATTTTCA
CCTTTTCACCTCAACAAAATTGTTTGTCTGAATCACATATGATTAACAGT
TTTGAGAAAAGTTTTGAGAAAGGTTTATCAGTTTCTTCAATTTTACATCA
CATTTTTTCGTTTCTGCAAAAGTCATCTGAAGCTTGATTTTTGTTTCTCA
Tatttaatcttttatttttagcaatcacaaataaaaaataaaatcatcaa
GAAACTGAAGCATTTGTTTTGTGAACCAACCCTTAGTATTTGAATTCAAA
GAACAAGAAGTTTTGATCCATTGTAATACCTTGTATGATGACGTTTGAAA
CGTAACATGGAAACGTAATATcaaaacgtaatatgaaaagGTAATATCCA
AGATGCCATTCCGACGGAAAAACAGACCCGCGTATGCAGGCAGAAGAAAA
CAAAGAGCCGAACAACTGGTAACAGCTGATTCAGaatgTTGTTTTTGTCA
CCAAGGACTGAACGAAGAATGTGGATTGTTTTTCAACGATGTTGAAGCCA
AGATTGCCGCTCACCAGTTCTGCTTGTTTTTCAGTTCAGGCCTTCCACAA
CTTGGTGAAGACACAGAAGGTTTTGATGGCTTTTTGTATAAAGATATCAT
TAAAGAAGCACAACGGGCTAATAAGATTTTATGTAAATTTTGCCAGCAAC
CAGGAGCGTCAGTGGGTTGTAGTTTAAAAACTTGCAGAACGTCATATCAT
TATTTGTGTGGATGGAAGCAAGGATTACAATTTGTTTTCCACGACTGCTT
CGATTCGTTCTGCAAAGCACATTGCTCAAAGCAAGATTTATCAGCGCTGA
AGGACAAAACACAAGAACATCTTTGTCCGCTTTGTTTGGAAGATGTAACA
CGTCACGTgaacaaaatcatcaaaactccATGTTGCAAAAATATGTTCGT
TCATAGAGAGTGCGTCCAGACACAAGCGAACAATGCTGGATATTTCTTCA
GATGTCCGACATGCAATAATCAAGAACTCTTCCAGAAAGAAATGTCCACA
TTTGGTGTTTACATTCCACAACGcgACGCTGCATGGGAAAAGAACAATGC
GTTCGGTGATTTATTGGAAAGTTATGACAAATGTGATTCTGCAGAATGCC
GTTGTCCGTTCGGTAAATCACACATCGAAGACGAAGGTGATTGGGACCTC
TTGCGATGTTACCACTGCGGTCAAAGTGGCGTTCACCGGGCATGTCTTGG
CGCCGACGTCACACCTGAATACGAATTCGTGTGCCGTGACTGTAACGACG
TCGTCGGggtcaacaaaataaattctgttGTATCACCGGAACGGCATGGA
GAGCGCTGGGAACAACACAAGTTATTGTTGAAACAATTGCGTCAGAAAAA
AGATCCGATCTTGCTGTCGTGTGGGATGCCGTCCGTGTTACGTGAGCTTC
ACGGCGTCACAAAGCAATGTCGTGTCGTGATCAATCCACTTCCCGTATTT
CTGATTGACCGGTTGCAACGACGTCGGGTAATCAGTACACGGTCACTCAT
CCAAAACTACGGAATCACCGTAACAAATCCACCGCCACCCAGAGCTTGGC
CTCCCAAGATGCGCAAGCCACGCGGTAAACAGCGCCGCAGGGTATGTAAC
GCCAATATCGCGCGAAGGAAGAAGTTAGAAGGACAAACGTCCACAATCTC
TACTTTACCTGTTCCCTCAACAATACAAGTCACACACTCACACACGGGAA
ATACCTTACCTGCTCAAAGCGCCTCTCCCTTGAGTAACATCCATCTACCG
AAAGACAATGTGAACAAAACACCTTCACCTTCTCGCTGCGCTAATGGAAA
CCGACCGTCTGAAACATCAAAAACTCAAACAGACAGTCCTTCTTCAAACA
GTCAAGATAGCCCTACCCTTTCCAAAACAGCAGCTCGCATCTTATCTGCC
ATCTCGTCCCCTTTTGTGAGTTCTTTTCATCGTAAACGGACGCTCAGTGA
TACGATTTCGGACGACACGATCAGCGTCAAATCTTCGCCCACCGATAAAC
TTCTCGTGCGTATCGATCGTAACAAAACTCGTTCATTTTCCGATAGTATA
TTTACAGACAAAGCGACACTCGGGAAAACTCGGTCGTTGTCGGTCACGGA
CACGGTACGAGACGACGAAAGCGAAGTGACTCTCAGCGCCGACGAATCTT
GTGACGAAGACGAATATCTCAGCGACGAAATTCCCTTCCCGACTGTTAAA
CGACTTTTACCGACAATCAACGAGAATGAtaacaagaaactaaaagaCAC
AAAATTGACACATTTCTTCAACGAGAAAAAGAAACCGACGACGACAAACA
ATAAAAACACCGacaaacaacctttacatatacGGCGTCGAAACTCTGAT
TTAAAAACAATCGTTAAAAATAACCATAAAATTTCCGATTGGTTTAGACC
TGCCACGACGAAAAATCCAATATCCTCATCTGGAAACCATCCGCCTTTGA
AACGTTCATCACCGCCCAACGGTAACAACAACGCCACTGTTCCGCCCTCT
CTATTTTACAATAAAACACCTCCATTGAATTCAAATGATAACAATACAGC
ATCATCCTCAACCGTTGATTCTCATCCTTCGAAAGTAAACAATTATACGA
ATTCTAAATCACAAACAATGGGACACAATAAAAACATGCCCACGAACTTC
AATAACAAATCGCCGTCTTCATTTTCTACAACTTCAACGAACAATAACAA
CAGGGCGGGGAAGCAAACATTAAAACGCCCTATTCCCGCCCAAGTACAGT
GGATTTCTTCAGATAGTGAGGCAGACAGTCCGCCCGCCAAAAAATCGATT
CTTATAACACGCCCGCATCCTGGGAAGAAATCAAGTTGCTCTAAAATCTC
CAGTGCAAATAAAAGACACGATTCGCTAGACTGTCAGCCAGGCCCTTCCT
CGTATTATATATCAGACTAGTAACCTTAACTTTCTTCCGCTTTATCCTCT
ATCGTAATTTTCTCAGGAATGTTCAGACTTTGCTAACAACTATTTTTTGA
CGAACAAATGGCCGGTCATTCAACTTGAAGATACACTCCTGACTGGGTAA
TTAAATTTCTAATTTAACTTAAACTTTGTGTTAAGGAAATTGGCAGACGA
CTTCTTCTAAAATAGGCAAAAATTGGGAATATGATTTAAAGGTCCagttt
ttcaaattcattttcaaattttctgaaaatttgaaactttgaaTACATCC
ACCTAAAGTTATCTTTCTAAcgagatatttttttattgtatctttcaaaa
tgttttaacGGCCCGttttttttacatgaaatttaattaaatttgGGAAT
AACTTTTGCTCGCGATGATCTATTCTAATCCATTTTTTCGGATATTCAGT
TTTCACATTGTTTATATTTTGTAGATATTTTTATCCTAATTAAAAACGGT
TGCATTTTTGGTACTAAACTTGTCTGAATTCTATAAGTGGAAAAATCCAT
TCGTCATATTTTATAAGGGCGTAAAGGGCCGACAAGGTATTTCATTTCTT
GTTGAAGCACTTCCACCCttttgggacgagatggagtctTTACAAGCACT
TGGTCgattggttggtcgttaaccagtaataaaacaatttttattacttc
aaataaccaattattgaagtatcttataaaaactccatctcatctggcaA
AAAGCCTCTTTTTCACAGACAGAGCTTTAAAATTCGGGATGAGCCGGAGT
TTtaacaagatacttcactaattggtcatttaaagtgatagagatgacgc
gttttttagaaaaagtaagaagattcttttattacatcttaacgaccaac
caaatcaaataagagcttgtaaaaactccagcttgtccctaaAATTCATA
CCGGAAACTTATCAGTCAACTTACTATTCGGTCACGGGTCAAATTTTGAT
TGATGCAATACAAGAGTCGATTAGTCCAGTAGAAATTCGTCCATAATAgg
gtcaacctagaaaaaaatattataaaaggtttctatataccgttggaaag
ataattttatcagctttcaaatgaggggtagagtcaatttttttgtcatg
gggaaaaaaagttatggac
Run BLAST on NCBI

transcript from alignment at scaffold_248:212430..222150+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054996 ID=TCONS_00054996|Name=TCONS_00054996|organism=Clytia hemisphaerica|type=transcript|length=9721bp|location=Sequence derived from alignment at scaffold_248:212430..222150+ (Clytia hemisphaerica)
CTCGTTGTTGATCCCTGCATTTTCATCCTTTAAACTTGACGCCCGCTGTG
TGTCATTCTTCGTGTACGGCAAATTCCTGACCAAAGTTTATTAGGGATGA
CTGTCGTGTCGGGTTTCAACTTATGATTAGTTTTTATATTCTTTTGTCAA
GCGTAGTATCATATTTTATCATATAGGCATTATATACTCTATATATTTTG
TAAGATTGCACAAAAAACGAAGCCTTTCGTACCCAAGTCTGTCATTTTCA
CCTTTTCACCTCAACAAAATTGTTTGTCTGAATCACATATGATTAACAGT
TTTGAGAAAAGTTTTGAGAAAGGTTTATCAGTTTCTTCAATTTTACATCA
CATTTTTTCGTTTCTGCAAAAGTCATCTGAAGCTTGATTTTTGTTTCTCA
Tatttaatcttttatttttagcaatcacaaataaaaaataaaatcatcaa
GAAACTGAAGCATTTGTTTTGTGAACCAACCCTTAGTATTTGAATTCAAA
GAACAAGAAGTTTTGATCCATTGTAATACCTTGTATGATGACGTTTGAAA
CGTAACATGGAAACGTAATATcaaaacgtaatatgaaaagGTAATATCCA
AGATGCCATTCCGACGGAAAAACAGACCCGCGTATGCAGGCAGAAGAAAA
CAAAGAGCCGAACAACTGGTAACAGCTGATTCAGGTATGATTGTTtctaa
tttcatttcatttgtatTTCTTATTACATTTTTAGATTGAACTTAATTAC
CAACTTTGTACATTGTGGAGtgaagttaggaaaattataatttgatttaa
tatgaatttgatattataatagatcttatcggagtttttgacttttctaa
aacagcgatgcattgtgggattgtttcgggggtattacattagaattccc
tcgaggaattcctaagaaatttctattgtaatacccccgaaacaatccca
caatgcatcaaaaactccgataagatctattacaGTATGACTTTCTCTGG
CAGTTCTAACCAGCGAATTAAATGCATCTAACCTAGACCTGGTTAGATCT
GCTGGAATTTAGTTCATTTAACAGTTATTTCTTGAAAGGACCATCACTaa
ggaaattgatttttctatttttttctttcagaatgTTGTTTTTGTCACCA
AGGACTGAACGAAGAATGTGGATTGTTTTTCAACGATGTTGAAGCCAAGA
TTGCCGCTCACCAGTTCTGCTTGGTAAAAAGGCTTTGAATTTGTTAAACT
ACCCTACTTAAACTTATCTCTTCTTTCCTGAGTTAACCTTCCAATGTCTG
CTTATatttatgatattcatgacgtaatgtcctctatggaaagaccccgg
tttttgccagtagtggcaaattttatacaatttttGTCTAATTTAGATTT
GGTtgaaaccggggtatttccgtagaaaacattacgtcatgactATCATG
AATCAGGTTTTAAAATTCATTATTAGGTGCAAAACTAGTATTaggtgcaa
aatttctttgttagATTTGCAGTATTTTTAGGGtctcatttttcatcaaa
gtttataataagaactcaaaaatttcaCAATGTCAATTACAATTCACCAA
AATATGTGCTATAGAAtattaaaatccattttccaatTCTTAATATTATT
GCTTTCACCACTGTTGTTTCAGGGCCCGCGccacgattttgaaagtgagg
gggccaaccaaaatatagtgactaaggaggcgcaaccatggtttgcgccg
acgggcgggaaaattttcgattttgacctatcttatttggctaaaacagc
ttcctttttgttctgattttctgaaagaaaactgttaagtttgtttgttt
aaaacaaaagagNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTCCATTTCA
GTTTTTCAGTTCAGGCCTTCCACAACTTGGTGAAGACACAGAAGGTTTTG
ATGGCTTTTTGTATAAAGATATCATTAAAGAAGCACAACGGGCTAATAAG
ATTGTAAGTCGTGCCCAAACCCTCTTTCTCGTTCGATTTATTGAACAAGT
CGAAATTGGGAACCGCGGGAAACCGGACATAGGGAATGAGTTCTGACTAA
TGGAATTCTGACTTCACTGATGTTGTAAACagattcattaaaaaaaacag
cTTCCATCAAAGTTTGCAACACCTTTATCCCCATGaagttatttttgaaa
cttgGCTCAGATTTTCAAATTTAGCAAAGCTTCCAAAGTTTTTTTCTCTT
AAATTTACTGTAAATGTCAAATTAACTAAATTTGATGATTTGTAGCTTCT
TTGATCTGTTTCAGTTATGTAAATTTTGCCAGCAACCAGGAGCGTCAGTG
GGTTGTAGTTTAAAAACTTGCAGAACGTCATATCATTATTTGTGTGGATG
GAAGCAAGGATTACAATTTGTTTTCCACGACTGCTTCGAGTAAGTAATGA
CCATTGTATAGCTTTTcattaatgggctcttccagaaaaaaattgaatat
ggagggtggaggatataacattttttagaaatttatcccccggacattgt
gacttttgaccccccggacagcaAGTCTAACCCCCctgacaagcatcagt
tgaccccatgGACAATTAACGTTACCCTCTAACaaagcaaaattaccccc
aaagaGAGCAAGTTTACTcaccggacactatatcctccacccccatgtac
ggacattttctggaagagcctaaTGGTTCGACAGTGTTTATATATACTGT
GGCTTCGATTCATATTTATTCGAACAACGAGGCAATATTCGTTGGGTATA
TTCTCTTTTTCTCTCACTAAAGTTAAAACATCACTCTTTTGATCgaaagt
attcatgatatgcaccattgcaatgtcttctgttccacccaatagctgat
tggttgaaagtgacgtattgactgcttttacgtcacttccaaccaatgag
ctattgggtggaacagaagacattgcagtggtgcatatcatgtatACATG
AGAATTCTATTCATGATAGGCAACACTGTAACGACTTCATAAAGTTACGT
AACTTCACTGTTTTTGGGGTGCAGGAGTTATCCATTATCCaacaaacaat
ttttaagaTAAGTCTTGGGATCTAATGAACTTTGTAATCCCCATCATTTT
TCTCAAGGGCATGTAAtagccatagatttataaagcccgaagggctagat
gtcgtgctttagctgaaaagtgtgccgtagtTAAGTAGGAAATTCTACCT
AGGTCAcacgcttgaccaatcagaagcttcgcaatattttttgcgatatt
tactttgtttgcttagaaaagcttaaagcacaacatctagccctttgggc
tttataaatctatggtaaTGAATAAGCATGAAATAgcttttgcctgaaaa
aaaactgacttaCTAGCGCCTACTTTTTTAGCTTTGGAGAATTTGGAATA
GTTTCCATTCTTTATCGTTCTAGTTCGTTCTGCAAAGCACATTGCTCAAA
GCAAGATTTATCAGCGCTGAAGGACAAAACACAAGAACATCTTTGTCCGC
TTTGTTTGGAAGATGTAACACGTCACGTgaacaaaatcatcaaaactccA
TGTTGCAAAAATATGTTCGTTCATAGAGAGTGCGTCCAGGTAACTTTTTG
CCATTTTTAATCTTTCTATCGAGAGTGTGTCCAGGTTTTAAACCTTTCCT
TAGAGAATGCGTCCAGGTTTTAAACCTTTACTTAAGGAATGCGTCCaggt
aactttttttttaatcatttttaacCTCTCTAGTGcgcaatattttttca
aaaatgggaaAAGCATTTAACTTGTAGTAGCTTGAGAGTTAGACAATACT
TTTGGAAAGCTATTTACATTAAACAGCCTTCGGTTTAAGTCCCTtataaa
tcaagtggtcagacAACCTCGTTCcttgcgtattatcagctttttgatgc
ttactgatagcgccagataatttatctggcgtcaatcagtactgtaaata
aagcctgggatacacggggacgagatTGGTGGTCAGGTGTAATGATCTAC
AGAGTCCAGTGTGGTAAAATAAGCTTTCATTTTGTTACAGACACAAGCGA
ACAATGCTGGATATTTCTTCAGATGTCCGACATGCAATAATCAAGAACTC
TTCCAGAAAGAAATGTCCACATTTGGTGTTTACATTCCACAACGGTAAAA
CGATATATTTTTCATTCTACTTTAATTAAATTTcggcaaaaaatcacaaa
acaaaaatttctgtaTTTACTTTGTTCGAAATCAGTTGAAAATGGAATCG
AAAACGtcatttggaaatttttcagttttattttaTGCGAAATGtccgat
tttaaaaatttagtaTTGATTTAATTTTGCTAATCGATCTCGTGAAAATA
GGATAAAATTAGCGAAAACGCGAAATTAAAAATCTTGTGAAAATTAAAGC
ATTATCTGCAGGTACTTAAAAGGACTTCAAAAGGGGCATCTTTTGATGCC
TTCATCTgtacaaatattttcttgtaaagaactttaaagggacataacag
gacttgcgaaatttgtaaacaaactgtatgcagcggatacaaaatcaaaa
caaatgtcacatgtcaaaataaaaaatcaaaccaaatatggctaattttg
attgatcaattgttttacaagtttgttttggacacgtggttcgcgcaatg
tttacattttactacttttatgtccctttaacgtCATATTATTTTTGCTG
AACTGAGATTCGATATCAAAAGAACCAACCTTTCTGAGACTCGAAAATTT
CGATTTCAATGTGTTAaacgaattttatttttcttacagtNTTCCTGAGA
CTCGAAAATTTCGATTTCAATGTGTTAaacgaattttatttttctttcag
cgACGCTGCATGGGAAAAGAACAATGCGTTCGGTGATTTATTGGAAAGTT
ATGACAAATGTGATTCTGCAGAATGCCGTTGTCCGTTCGGTAAATCACAC
ATCGAAGACGAAGGGTAcgccctgttttttttttcatttattgtcATATC
ACAGTGGAGTCTCCTTAACTCGTACccacacggggaacacaaatttgttc
gagttggGAAATTTCGGATTATGGAGTAGGTTTATGATACATTTTAACTG
AAGGAACGAGATTGTTCGACTTAAGtaaacattcgagttatagaggttcg
agttaaaggggTTACTAAACAGAAAGTACCACAAGCATATTCTCTGTTTC
TTCTATTTCTTGCTGTCGGGTCTTGAAACacgtaaaaatgaaaaacttga
gTTTTGATAATCTTATTGTTAGGAAAATATATAAACTAAAGGTTTTACGT
ACCTTACTTGTAAAATACTGCAGTTTTTCTACTTGAAAGATTAAGCATTC
TGGTTAAATTGCCCTAATATGTACTTTAGAATTTCTAGAATGTTGTCCTA
GTTTGTCCTCtgtttttggcaaaaacatAGTGTCTCTCGGTAGTGTTTCG
TTTAGAACtagttgaaattttgtttttcgtcttgaccttttttttgagaa
taatcTGGCccagaagaaatttttttcaaatccatTAAACGTCATTTTAG
TGATTGGGACCTCTTGCGATGTTACCACTGCGGTCAAAGTGGCGTTCACC
GGGCATGTCTTGGCGCCGACGTCACACCTGAATACGAATTCGTGTGCCGT
GACTGTAACGACGTCGTCGGggtcaacaaaataaattctgttGTATCACC
GGAACGGCATGGAGAGCGCTGGGAACAACACAAGTTATTGTTGAAACAAT
TGCGTCAGGTGAGTTGGAAGCCTTGTTTTTACAAGCGCGTTGCGGTTACG
TCTATCTATGAAGCCTCAAAAATTGCAATCGTTTCTTTTGGTTTATCATC
AGAAGGAATTAAAACAAATACAAATTATACACATTGTGCGATTTTTTAAA
GCGAACACTATTAGTGGTGGGAAATTGAAATTTGGTCACAAAATCGAact
attttgcagaattttacCACCATACGTCAAACAGTGTGTAGGggtcaaag
tatctcaaataaTTATGTAAGAACACAAACagcaatttattttattttct
atcagAAAAAAGATCCGATCTTGCTGTCGTGTGGGATGCCGTCCGTGTTA
CGTGAGCTTCACGGCGTCACAAAGCAATGTCGTGTCGTGATCAATCCACT
TCCCGTATTTCTGATTGACCGGTTGCAACGACGTCGGGTAATCAGTACAC
GGTCACTCATCCAAAACTACGGTAAGCACTAAGTGAGAAATCTTTTATTA
CATTTACTTTTGAGAAGAAGGTAGGGGTTTGTTTGGTGAAAGCAAAAGGA
TCTAAGATCTTTGATTGTGTTCCACGAGGAAGCTATTCCATTCgtttatt
cattcattcgttcatGCATTCATTGATTTATTCCGTcaatcattcattca
ttcattcattcattccgtcaatcattcattcattccgtcaatcattcatt
cattcattcattccgTCAAtcattcatttattcattcCGCCAAtcattca
tttattcattcattccgccattcattcattcattcattcattccgtcaat
cattcattcattcattcattccgtcattcgttcgttcgttcgttcgttcg
ttcgttcgttcgttcgttcgttcgtttgttcgttcgttcgttcgttcgtt
cgttcgttcgttcgttcgttcgttcattcattcgttaattcattcattca
ttaattcattcattcattaattcattcattcattaattCATCCATTCTTT
TATTTATTAGGAATCACCGTAACAAATCCACCGCCACCCAGAGCTTGGCC
TCCCAAGATGCGCAAGCCACGCGGTAAACAGCGCCGCAGGGTATGTAACG
CCAATATCGCGCGAAGGAAGAAGTTAGAAGGACAAACGTCCACAATCTCT
ACTTTACGTAAGTTTCTATTATTTAAATTCTGAGTTGATACTTGTTATAC
tgtgtttcttttttatgcCTTTATGCAAAATTGTTTGGTACGTTAAAGTT
GATTAACCTCTGAATTGATTGAAGTTGTATTTCAGTTGCATTTCCTTATT
CCATTTTCAGCTGTTCCCTCAACAATACAAGTCACACACTCACACACGGG
AAATACCTTACCTGCTCAAAGCGCCTCTCCCTTGAGTAACATCCATCTAC
CGAAAGACAATGTGAACAAAACACCTTCACCTTCTCGCTGCGCTAATGGA
AACCGACCGTCTGAAACATCAAAAACTCAAACAGACAGTCCTTCTTCAAA
CAGTCAAGATAGCCCTACCCTTTCCAAAACAGCAGCTCGCATCTTATCTG
CCATCTCGTCCCCTTTTGTGAGTTCTTTTCATCGTAAACGGACGCTCAGT
GATACGATTTCGGACGACACGATCAGCGTCAAATCTTCGCCCACCGATAA
ACTTCTCGTGCGTATCGATCGTAACAAAACTCGTTCATTTTCCGATAGTA
TATTTACAGACAAAGCGACACTCGGGAAAACTCGGTCGTTGTCGGTCACG
GACACGGTACGAGACGACGAAAGCGAAGTGACTCTCAGCGCCGACGAATC
TTGTGACGAAGACGAATATCTCAGCGACGAAATTCCCTTCCCGACTGTTA
AACGACTTTTACCGACAATCAACGAGAATGAtaacaagaaactaaaagaC
ACAAAATTGACACATTTCTTCAACGAGAAAAAGAAACCGACGACGACAAA
CAATAAAAACACCGacaaacaacctttacatatacGGCGTCGAAACTCTG
ATTTAAAAACAATCGTTAAAAATAACCATAAAATTTCCGATTGGTTTAGA
CCTGCCACGACGAAAAATCCAATATCCTCATCTGGAAACCATCCGCCTTT
GAAACGTTCATCACCGCCCAACGGTAACAACAACGCCACTGTTCCGCCCT
CTCTATTTTACAATAAAACACCTCCATTGAATTCAAATGATAACAATACA
GCATCATCCTCAACCGTTGATTCTCATCCTTCGAAAGTAAACAATTATAC
GAATTCTAAATCACAAACAATGGGACACAATAAAAACATGCCCACGAACT
TCAATAACAAATCGCCGTCTTCATTTTCTACAACTTCAACGAACAATAAC
AACAGGGCGGGGAAGCAAACATTAAAACGCCCTATTCCCGCCCAAGTACA
GTGGATTTCTTCAGATAGTGAGGCAGACAGTCCGCCCGCCAAAAAATCGA
TTCTTATAACACGCCCGCATCCTGGGAAGAAATCAAGTTGCTCTAAAATC
TCCAGTGCAAATAAAAGACACGATTCGCTAGACTGTCAGCCAGGCCCTTC
CTCGTATTATATATCAGACTAGTAACCTTAACTTTCTTCCGCTTTATCCT
CTATCGTAATTTTCTCAGGAATGTTCAGACTTTGCTAACAACTATTTTTT
GACGAACAAATGGCCGGTCATTCAACTTGAAGATACACTCCTGACTGGGT
AATTAAATTTCTAATTTAACTTAAACTTTGTGTTAAGGAAATTGGCAGAC
GACTTCTTCTAAAATAGGCAAAAATTGGGAATATGATTTAAAGGTCCagt
ttttcaaattcattttcaaattttctgaaaatttgaaactttgaaTACAT
CCACCTAAAGTTATCTTTCTAAcgagatatttttttattgtatctttcaa
aatgttttaacGGCCCGttttttttacatgaaatttaattaaatttgGGA
ATAACTTTTGCTCGCGATGATCTATTCTAATCCATTTTTTCGGATATTCA
GTTTTCACATTGTTTATATTTTGTAGATATTTTTATCCTAATTAAAAACG
GTTGCATTTTTGGTACTAAACTTGTCTGAATTCTATAAGTGGAAAAATCC
ATTCGTCATATTTTATAAGGGCGTAAAGGGCCGACAAGGTATTTCATTTC
TTGTTGAAGCACTTCCACCCttttgggacgagatggagtctTTACAAGCA
CTTGGTCgattggttggtcgttaaccagtaataaaacaatttttattact
tcaaataaccaattattgaagtatcttataaaaactccatctcatctggc
aAAAAGCCTCTTTTTCACAGACAGAGCTTTAAAATTCGGGATGAGCCGGA
GTTTtaacaagatacttcactaattggtcatttaaagtgatagagatgac
gcgttttttagaaaaagtaagaagattcttttattacatcttaacgacca
accaaatcaaataagagcttgtaaaaactccagcttgtccctaaAATTCA
TACCGGAAACTTATCAGTCAACTTACTATTCGGTCACGGGTCAAATTTTG
ATTGATGCAATACAAGAGTCGATTAGTCCAGTAGAAATTCGTCCATAATA
gggtcaacctagaaaaaaatattataaaaggtttctatataccgttggaa
agataattttatcagctttcaaatgaggggtagagtcaatttttttgtca
tggggaaaaaaagttatggac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034654XLOC_034654Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054996-exon-scaffold_248-1491911889:212430..213113TCONS_00054996-exon-scaffold_248-1491911889:212430..213113Clytia hemisphaericaexon
TCONS_00054996-exon-scaffold_248-1510915933:212430..213113TCONS_00054996-exon-scaffold_248-1510915933:212430..213113Clytia hemisphaericaexon
TCONS_00054996-exon-scaffold_248-1575043694:212430..213113TCONS_00054996-exon-scaffold_248-1575043694:212430..213113Clytia hemisphaericaexon
TCONS_00054996-exon-scaffold_248-1491911889:213561..213652TCONS_00054996-exon-scaffold_248-1491911889:213561..213652Clytia hemisphaericaexon
TCONS_00054996-exon-scaffold_248-1510915933:213561..213652TCONS_00054996-exon-scaffold_248-1510915933:213561..213652Clytia hemisphaericaexon
TCONS_00054996-exon-scaffold_248-1575043694:213561..213652TCONS_00054996-exon-scaffold_248-1575043694:213561..213652Clytia hemisphaericaexon
TCONS_00054996-exon-scaffold_248-1491911889:214531..214632TCONS_00054996-exon-scaffold_248-1491911889:214531..214632Clytia hemisphaericaexon
TCONS_00054996-exon-scaffold_248-1510915933:214531..214632TCONS_00054996-exon-scaffold_248-1510915933:214531..214632Clytia hemisphaericaexon
TCONS_00054996-exon-scaffold_248-1575043694:214531..214632TCONS_00054996-exon-scaffold_248-1575043694:214531..214632Clytia hemisphaericaexon
TCONS_00054996-exon-scaffold_248-1491911889:214944..215068TCONS_00054996-exon-scaffold_248-1491911889:214944..215068Clytia hemisphaericaexon
TCONS_00054996-exon-scaffold_248-1510915933:214944..215068TCONS_00054996-exon-scaffold_248-1510915933:214944..215068Clytia hemisphaericaexon
TCONS_00054996-exon-scaffold_248-1575043694:214944..215068TCONS_00054996-exon-scaffold_248-1575043694:214944..215068Clytia hemisphaericaexon
TCONS_00054996-exon-scaffold_248-1491911889:216103..216268TCONS_00054996-exon-scaffold_248-1491911889:216103..216268Clytia hemisphaericaexon
TCONS_00054996-exon-scaffold_248-1510915933:216103..216268TCONS_00054996-exon-scaffold_248-1510915933:216103..216268Clytia hemisphaericaexon
TCONS_00054996-exon-scaffold_248-1575043694:216103..216268TCONS_00054996-exon-scaffold_248-1575043694:216103..216268Clytia hemisphaericaexon
TCONS_00054996-exon-scaffold_248-1491911889:216720..216823TCONS_00054996-exon-scaffold_248-1491911889:216720..216823Clytia hemisphaericaexon
TCONS_00054996-exon-scaffold_248-1510915933:216720..216823TCONS_00054996-exon-scaffold_248-1510915933:216720..216823Clytia hemisphaericaexon
TCONS_00054996-exon-scaffold_248-1575043694:216720..216823TCONS_00054996-exon-scaffold_248-1575043694:216720..216823Clytia hemisphaericaexon
TCONS_00054996-exon-scaffold_248-1491911889:217530..217643TCONS_00054996-exon-scaffold_248-1491911889:217530..217643Clytia hemisphaericaexon
TCONS_00054996-exon-scaffold_248-1510915933:217530..217643TCONS_00054996-exon-scaffold_248-1510915933:217530..217643Clytia hemisphaericaexon
TCONS_00054996-exon-scaffold_248-1575043694:217530..217643TCONS_00054996-exon-scaffold_248-1575043694:217530..217643Clytia hemisphaericaexon
TCONS_00054996-exon-scaffold_248-1491911889:218230..218437TCONS_00054996-exon-scaffold_248-1491911889:218230..218437Clytia hemisphaericaexon
TCONS_00054996-exon-scaffold_248-1510915933:218230..218437TCONS_00054996-exon-scaffold_248-1510915933:218230..218437Clytia hemisphaericaexon
TCONS_00054996-exon-scaffold_248-1575043694:218230..218437TCONS_00054996-exon-scaffold_248-1575043694:218230..218437Clytia hemisphaericaexon
TCONS_00054996-exon-scaffold_248-1491911889:218735..218900TCONS_00054996-exon-scaffold_248-1491911889:218735..218900Clytia hemisphaericaexon
TCONS_00054996-exon-scaffold_248-1510915933:218735..218900TCONS_00054996-exon-scaffold_248-1510915933:218735..218900Clytia hemisphaericaexon
TCONS_00054996-exon-scaffold_248-1575043694:218735..218900TCONS_00054996-exon-scaffold_248-1575043694:218735..218900Clytia hemisphaericaexon
TCONS_00054996-exon-scaffold_248-1491911889:219440..219586TCONS_00054996-exon-scaffold_248-1491911889:219440..219586Clytia hemisphaericaexon
TCONS_00054996-exon-scaffold_248-1510915933:219440..219586TCONS_00054996-exon-scaffold_248-1510915933:219440..219586Clytia hemisphaericaexon
TCONS_00054996-exon-scaffold_248-1575043694:219440..219586TCONS_00054996-exon-scaffold_248-1575043694:219440..219586Clytia hemisphaericaexon
TCONS_00054996-exon-scaffold_248-1491911889:219740..222150TCONS_00054996-exon-scaffold_248-1491911889:219740..222150Clytia hemisphaericaexon
TCONS_00054996-exon-scaffold_248-1510915933:219740..222150TCONS_00054996-exon-scaffold_248-1510915933:219740..222150Clytia hemisphaericaexon
TCONS_00054996-exon-scaffold_248-1575043694:219740..222150TCONS_00054996-exon-scaffold_248-1575043694:219740..222150Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_248supercontigscaffold_248:212430..222150 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.65579	2.49215	0.857169	1.7614	2.48444	2.40535	2.00361	2.1193	0.679326	1.01799	6.04176e-06	0.650029	0.734734	0.538264	0.618654	0.870454	0.774246	1.1616	0.40216	0.31309	0.541405	0.371324	3.7912	4.15491	2.15165	2.92421	0.399628	0.582007	2.31932	3.66597
Blast
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BLAST of TCONS_00054996 vs. Swiss-Prot (Human)
Match: G2E3 (G2/M phase-specific E3 ubiquitin-protein ligase OS=Homo sapiens GN=G2E3 PE=1 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 4.526e-54
Identity = 110/281 (39.15%), Postives = 171/281 (60.85%), Query Frame = 3 
Query:  687 CCFCHQGLNEECGLFFNDVEAK----IAAHQFCLFFSSGLPQLGEDTEGFDGFLYKDIIKEAQRANKILCKFCQQPGASVGCSLKTCRTSYHYLCGWKQGLQFVFHDCFDSFCKAHCSKQDLSALKDKTQEHL-CPLCLEDVTRHVN-KIIKTPCCKNMFVHRECVQTQANNAG-YFFRCPTCNNQELFQKEMSTFGVYIPQRDAAWE-KNNAFGDLLESYDKCDSAECRCPFGKSHIEDEGDWDLLRCYHCGQSGVHRACLGADVTPEYEFVCRDCNDVV 1505
            C FC +  +++C   + + + K    +  H +CL  SSG+ Q G++ EG  GFL +DI KE  RA+K+ C  C++ GAS+GC    C+ SYH+ CG ++   F F   F SFC  H   Q +++  +  +E L C +CLE +    +  I+++PCCKN + HR+C+Q QA NAG +FFRC  CNN ++FQKEM   G++IP++DA+WE + NA+ +LL+ Y++CD   CRC  G+ +   +  W++ RC  CG SG H AC  +  + E  + C +C  ++
Sbjct:   14 CVFCRK--HDDCPNKYGEKKTKEKWNLTVHYYCLLMSSGIWQRGKEEEGVYGFLIEDIRKEVNRASKLKCCVCKKNGASIGCVAPRCKRSYHFPCGLQRECIFQFTGNFASFCWDHRPVQIITS--NNYRESLPCTICLEFIEPIPSYNILRSPCCKNAWFHRDCLQVQAINAGVFFFRCTICNNSDIFQKEMLRMGIHIPEKDASWELEENAYQELLQHYERCDVRRCRCKEGRDYNAPDSKWEIKRCQCCGSSGTHLAC-SSLRSWEQNWECLECRGII 289
The following BLAST results are available for this feature:
BLAST of TCONS_00054996 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
G2E34.526e-5439.15G2/M phase-specific E3 ubiquitin-protein ligase OS... [more]
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