TCONS_00054998 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054998
Unique NameTCONS_00054998
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3251

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054998 ID=TCONS_00054998|Name=TCONS_00054998|organism=Clytia hemisphaerica|type=transcript|length=3251bp
gcaatcacaaataaaaaataaaatcatcaaGAAACTGAAGCATTTGTTTT
GTGAACCAACCCTTAGTATTTGAATTCAAAGAACAAGAAGTTTTGATCCA
TTGTAATACCTTGTATGATGACGTTTGAAACGTAACATGGAAACGTAATA
TcaaaacgtaatatgaaaagGTAATATCCAAGATGCCATTCCGACGGAAA
AACAGACCCGCGTATGCAGGCAGAAGAAAACAAAGAGCCGAACAACTGGT
AACAGCTGATTCAGaatgTTGTTTTTGTCACCAAGGACTGAACGAAGAAT
GTGGATTGTTTTTCAACGATGTTGAAGCCAAGATTGCCGCTCACCAGTTC
TGCTTGTTTTTCAGTTCAGGCCTTCCACAACTTGGTGAAGACACAGAAGG
TTTTGATGGCTTTTTGTATAAAGATATCATTAAAGAAGCACAACGGGCTA
ATAAGATTTTATGTAAATTTTGCCAGCAACCAGGAGCGTCAGTGGGTTGT
AGTTTAAAAACTTGCAGAACGTCATATCATTATTTGTGTGGATGGAAGCA
AGGATTACAATTTGTTTTCCACGACTGCTTCGAACACAAGCGAACAATGC
TGGATATTTCTTCAGATGTCCGACATGCAATAATCAAGAACTCTTCCAGA
AAGAAATGTCCACATTTGGTGTTTACATTCCACAACGcgACGCTGCATGG
GAAAAGAACAATGCGTTCGGTGATTTATTGGAAAGTTATGACAAATGTGA
TTCTGCAGAATGCCGTTGTCCGTTCGGTAAATCACACATCGAAGACGAAG
GTGATTGGGACCTCTTGCGATGTTACCACTGCGGTCAAAGTGGCGTTCAC
CGGGCATGTCTTGGCGCCGACGTCACACCTGAATACGAATTCGTGTGCCG
TGACTGTAACGACGTCGTCGGggtcaacaaaataaattctgttGTATCAC
CGGAACGGCATGGAGAGCGCTGGGAACAACACAAGTTATTGTTGAAACAA
TTGCGTCAGAAAAAAGATCCGATCTTGCTGTCGTGTGGGATGCCGTCCGT
GTTACGTGAGCTTCACGGCGTCACAAAGCAATGTCGTGTCGTGATCAATC
CACTTCCCGTATTTCTGATTGACCGGTTGCAACGACGTCGGGTAATCAGT
ACACGGTCACTCATCCAAAACTACGGAATCACCGTAACAAATCCACCGCC
ACCCAGAGCTTGGCCTCCCAAGATGCGCAAGCCACGCGGTAAACAGCGCC
GCAGGGTATGTAACGCCAATATCGCGCGAAGGAAGAAGTTAGAAGGACAA
ACGTCCACAATCTCTACTTTACCTGTTCCCTCAACAATACAAGTCACACA
CTCACACACGGGAAATACCTTACCTGCTCAAAGCGCCTCTCCCTTGAGTA
ACATCCATCTACCGAAAGACAATGTGAACAAAACACCTTCACCTTCTCGC
TGCGCTAATGGAAACCGACCGTCTGAAACATCAAAAACTCAAACAGACAG
TCCTTCTTCAAACAGTCAAGATAGCCCTACCCTTTCCAAAACAGCAGCTC
GCATCTTATCTGCCATCTCGTCCCCTTTTACCTGCCACGACGAAAAATCC
AATATCCTCATCTGGAAACCATCCGCCTTTGAAACGTTCATCACCGCCCA
ACGGTAACAACAACGCCACTGTTCCGCCCTCTCTATTTTACAATAAAACA
CCTCCATTGAATTCAAATGATAACAATACAGCATCATCCTCAACCGTTGA
TTCTCATCCTTCGAAAGTAAACAATTATACGAATTCTAAATCACAAACAA
TGGGACACAATAAAAACATGCCCACGAACTTCAATAACAAATCGCCGTCT
TCATTTTCTACAACTTCAACGAACAATAACAACAGGGCGGGGAAGCAAAC
ATTAAAACGCCCTATTCCCGCCCAAGTACAGTGGATTTCTTCAGATAGTG
AGGCAGACAGTCCGCCCGCCAAAAAATCGATTCTTATAACACGCCCGCAT
CCTGGGAAGAAATCAAGTTGCTCTAAAATCTCCAGTGCAAATAAAAGACA
CGATTCGCTAGACTGTCAGCCAGGCCCTTCCTCGTATTATATATCAGACT
AGTAACCTTAACTTTCTTCCGCTTTATCCTCTATCGTAATTTTCTCAGGA
ATGTTCAGACTTTGCTAACAACTATTTTTTGACGAACAAATGGCCGGTCA
TTCAACTTGAAGATACACTCCTGACTGGGTAATTAAATTTCTAATTTAAC
TTAAACTTTGTGTTAAGGAAATTGGCAGACGACTTCTTCTAAAATAGGCA
AAAATTGGGAATATGATTTAAAGGTCCagtttttcaaattcattttcaaa
ttttctgaaaatttgaaactttgaaTACATCCACCTAAAGTTATCTTTCT
AAcgagatatttttttattgtatctttcaaaatgttttaacGGCCCGttt
tttttacatgaaatttaattaaatttgGGAATAACTTTTGCTCGCGATGA
TCTATTCTAATCCATTTTTTCGGATATTCAGTTTTCACATTGTTTATATT
TTGTAGATATTTTTATCCTAATTAAAAACGGTTGCATTTTTGGTACTAAA
CTTGTCTGAATTCTATAAGTGGAAAAATCCATTCGTCATATTTTATAAGG
GCGTAAAGGGCCGACAAGGTATTTCATTTCTTGTTGAAGCACTTCCACCC
ttttgggacgagatggagtctTTACAAGCACTTGGTCgattggttggtcg
ttaaccagtaataaaacaatttttattacttcaaataaccaattattgaa
gtatcttataaaaactccatctcatctggcaAAAAGCCTCTTTTTCACAG
ACAGAGCTTTAAAATTCGGGATGAGCCGGAGTTTtaacaagatacttcac
taattggtcatttaaagtgatagagatgacgcgttttttagaaaaagtaa
gaagattcttttattacatcttaacgaccaaccaaatcaaataagagctt
gtaaaaactccagcttgtccctaaAATTCATACCGGAAACTTATCAGTCA
ACTTACTATTCGGTCACGGGTCAAATTTTGATTGATGCAATACAAGAGTC
GATTAGTCCAGTAGAAATTCGTCCATAATAgggtcaacctagaaaaaaat
attataaaaggtttctatataccgttggaaagataattttatcagctttc
aaatgaggggtagagtcaatttttttgtcatggggaaaaaaagttatgga
c
Run BLAST on NCBI

transcript from alignment at scaffold_248:212850..222150+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054998 ID=TCONS_00054998|Name=TCONS_00054998|organism=Clytia hemisphaerica|type=transcript|length=9301bp|location=Sequence derived from alignment at scaffold_248:212850..222150+ (Clytia hemisphaerica)
gcaatcacaaataaaaaataaaatcatcaaGAAACTGAAGCATTTGTTTT
GTGAACCAACCCTTAGTATTTGAATTCAAAGAACAAGAAGTTTTGATCCA
TTGTAATACCTTGTATGATGACGTTTGAAACGTAACATGGAAACGTAATA
TcaaaacgtaatatgaaaagGTAATATCCAAGATGCCATTCCGACGGAAA
AACAGACCCGCGTATGCAGGCAGAAGAAAACAAAGAGCCGAACAACTGGT
AACAGCTGATTCAGGTATGATTGTTtctaatttcatttcatttgtatTTC
TTATTACATTTTTAGATTGAACTTAATTACCAACTTTGTACATTGTGGAG
tgaagttaggaaaattataatttgatttaatatgaatttgatattataat
agatcttatcggagtttttgacttttctaaaacagcgatgcattgtggga
ttgtttcgggggtattacattagaattccctcgaggaattcctaagaaat
ttctattgtaatacccccgaaacaatcccacaatgcatcaaaaactccga
taagatctattacaGTATGACTTTCTCTGGCAGTTCTAACCAGCGAATTA
AATGCATCTAACCTAGACCTGGTTAGATCTGCTGGAATTTAGTTCATTTA
ACAGTTATTTCTTGAAAGGACCATCACTaaggaaattgatttttctattt
ttttctttcagaatgTTGTTTTTGTCACCAAGGACTGAACGAAGAATGTG
GATTGTTTTTCAACGATGTTGAAGCCAAGATTGCCGCTCACCAGTTCTGC
TTGGTAAAAAGGCTTTGAATTTGTTAAACTACCCTACTTAAACTTATCTC
TTCTTTCCTGAGTTAACCTTCCAATGTCTGCTTATatttatgatattcat
gacgtaatgtcctctatggaaagaccccggtttttgccagtagtggcaaa
ttttatacaatttttGTCTAATTTAGATTTGGTtgaaaccggggtatttc
cgtagaaaacattacgtcatgactATCATGAATCAGGTTTTAAAATTCAT
TATTAGGTGCAAAACTAGTATTaggtgcaaaatttctttgttagATTTGC
AGTATTTTTAGGGtctcatttttcatcaaagtttataataagaactcaaa
aatttcaCAATGTCAATTACAATTCACCAAAATATGTGCTATAGAAtatt
aaaatccattttccaatTCTTAATATTATTGCTTTCACCACTGTTGTTTC
AGGGCCCGCGccacgattttgaaagtgagggggccaaccaaaatatagtg
actaaggaggcgcaaccatggtttgcgccgacgggcgggaaaattttcga
ttttgacctatcttatttggctaaaacagcttcctttttgttctgatttt
ctgaaagaaaactgttaagtttgtttgtttaaaacaaaagagNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNTTTTCCATTTCAGTTTTTCAGTTCAGGCCTTC
CACAACTTGGTGAAGACACAGAAGGTTTTGATGGCTTTTTGTATAAAGAT
ATCATTAAAGAAGCACAACGGGCTAATAAGATTGTAAGTCGTGCCCAAAC
CCTCTTTCTCGTTCGATTTATTGAACAAGTCGAAATTGGGAACCGCGGGA
AACCGGACATAGGGAATGAGTTCTGACTAATGGAATTCTGACTTCACTGA
TGTTGTAAACagattcattaaaaaaaacagcTTCCATCAAAGTTTGCAAC
ACCTTTATCCCCATGaagttatttttgaaacttgGCTCAGATTTTCAAAT
TTAGCAAAGCTTCCAAAGTTTTTTTCTCTTAAATTTACTGTAAATGTCAA
ATTAACTAAATTTGATGATTTGTAGCTTCTTTGATCTGTTTCAGTTATGT
AAATTTTGCCAGCAACCAGGAGCGTCAGTGGGTTGTAGTTTAAAAACTTG
CAGAACGTCATATCATTATTTGTGTGGATGGAAGCAAGGATTACAATTTG
TTTTCCACGACTGCTTCGAGTAAGTAATGACCATTGTATAGCTTTTcatt
aatgggctcttccagaaaaaaattgaatatggagggtggaggatataaca
ttttttagaaatttatcccccggacattgtgacttttgaccccccggaca
gcaAGTCTAACCCCCctgacaagcatcagttgaccccatgGACAATTAAC
GTTACCCTCTAACaaagcaaaattacccccaaagaGAGCAAGTTTACTca
ccggacactatatcctccacccccatgtacggacattttctggaagagcc
taaTGGTTCGACAGTGTTTATATATACTGTGGCTTCGATTCATATTTATT
CGAACAACGAGGCAATATTCGTTGGGTATATTCTCTTTTTCTCTCACTAA
AGTTAAAACATCACTCTTTTGATCgaaagtattcatgatatgcaccattg
caatgtcttctgttccacccaatagctgattggttgaaagtgacgtattg
actgcttttacgtcacttccaaccaatgagctattgggtggaacagaaga
cattgcagtggtgcatatcatgtatACATGAGAATTCTATTCATGATAGG
CAACACTGTAACGACTTCATAAAGTTACGTAACTTCACTGTTTTTGGGGT
GCAGGAGTTATCCATTATCCaacaaacaatttttaagaTAAGTCTTGGGA
TCTAATGAACTTTGTAATCCCCATCATTTTTCTCAAGGGCATGTAAtagc
catagatttataaagcccgaagggctagatgtcgtgctttagctgaaaag
tgtgccgtagtTAAGTAGGAAATTCTACCTAGGTCAcacgcttgaccaat
cagaagcttcgcaatattttttgcgatatttactttgtttgcttagaaaa
gcttaaagcacaacatctagccctttgggctttataaatctatggtaaTG
AATAAGCATGAAATAgcttttgcctgaaaaaaaactgacttaCTAGCGCC
TACTTTTTTAGCTTTGGAGAATTTGGAATAGTTTCCATTCTTTATCGTTC
TAGTTCGTTCTGCAAAGCACATTGCTCAAAGCAAGATTTATCAGCGCTGA
AGGACAAAACACAAGAACATCTTTGTCCGCTTTGTTTGGAAGATGTAACA
CGTCACGTgaacaaaatcatcaaaactccATGTTGCAAAAATATGTTCGT
TCATAGAGAGTGCGTCCAGGTAACTTTTTGCCATTTTTAATCTTTCTATC
GAGAGTGTGTCCAGGTTTTAAACCTTTCCTTAGAGAATGCGTCCAGGTTT
TAAACCTTTACTTAAGGAATGCGTCCaggtaactttttttttaatcattt
ttaacCTCTCTAGTGcgcaatattttttcaaaaatgggaaAAGCATTTAA
CTTGTAGTAGCTTGAGAGTTAGACAATACTTTTGGAAAGCTATTTACATT
AAACAGCCTTCGGTTTAAGTCCCTtataaatcaagtggtcagacAACCTC
GTTCcttgcgtattatcagctttttgatgcttactgatagcgccagataa
tttatctggcgtcaatcagtactgtaaataaagcctgggatacacgggga
cgagatTGGTGGTCAGGTGTAATGATCTACAGAGTCCAGTGTGGTAAAAT
AAGCTTTCATTTTGTTACAGACACAAGCGAACAATGCTGGATATTTCTTC
AGATGTCCGACATGCAATAATCAAGAACTCTTCCAGAAAGAAATGTCCAC
ATTTGGTGTTTACATTCCACAACGGTAAAACGATATATTTTTCATTCTAC
TTTAATTAAATTTcggcaaaaaatcacaaaacaaaaatttctgtaTTTAC
TTTGTTCGAAATCAGTTGAAAATGGAATCGAAAACGtcatttggaaattt
ttcagttttattttaTGCGAAATGtccgattttaaaaatttagtaTTGAT
TTAATTTTGCTAATCGATCTCGTGAAAATAGGATAAAATTAGCGAAAACG
CGAAATTAAAAATCTTGTGAAAATTAAAGCATTATCTGCAGGTACTTAAA
AGGACTTCAAAAGGGGCATCTTTTGATGCCTTCATCTgtacaaatatttt
cttgtaaagaactttaaagggacataacaggacttgcgaaatttgtaaac
aaactgtatgcagcggatacaaaatcaaaacaaatgtcacatgtcaaaat
aaaaaatcaaaccaaatatggctaattttgattgatcaattgttttacaa
gtttgttttggacacgtggttcgcgcaatgtttacattttactactttta
tgtccctttaacgtCATATTATTTTTGCTGAACTGAGATTCGATATCAAA
AGAACCAACCTTTCTGAGACTCGAAAATTTCGATTTCAATGTGTTAaacg
aattttatttttcttacagtNTTCCTGAGACTCGAAAATTTCGATTTCAA
TGTGTTAaacgaattttatttttctttcagcgACGCTGCATGGGAAAAGA
ACAATGCGTTCGGTGATTTATTGGAAAGTTATGACAAATGTGATTCTGCA
GAATGCCGTTGTCCGTTCGGTAAATCACACATCGAAGACGAAGGGTAcgc
cctgttttttttttcatttattgtcATATCACAGTGGAGTCTCCTTAACT
CGTACccacacggggaacacaaatttgttcgagttggGAAATTTCGGATT
ATGGAGTAGGTTTATGATACATTTTAACTGAAGGAACGAGATTGTTCGAC
TTAAGtaaacattcgagttatagaggttcgagttaaaggggTTACTAAAC
AGAAAGTACCACAAGCATATTCTCTGTTTCTTCTATTTCTTGCTGTCGGG
TCTTGAAACacgtaaaaatgaaaaacttgagTTTTGATAATCTTATTGTT
AGGAAAATATATAAACTAAAGGTTTTACGTACCTTACTTGTAAAATACTG
CAGTTTTTCTACTTGAAAGATTAAGCATTCTGGTTAAATTGCCCTAATAT
GTACTTTAGAATTTCTAGAATGTTGTCCTAGTTTGTCCTCtgtttttggc
aaaaacatAGTGTCTCTCGGTAGTGTTTCGTTTAGAACtagttgaaattt
tgtttttcgtcttgaccttttttttgagaataatcTGGCccagaagaaat
ttttttcaaatccatTAAACGTCATTTTAGTGATTGGGACCTCTTGCGAT
GTTACCACTGCGGTCAAAGTGGCGTTCACCGGGCATGTCTTGGCGCCGAC
GTCACACCTGAATACGAATTCGTGTGCCGTGACTGTAACGACGTCGTCGG
ggtcaacaaaataaattctgttGTATCACCGGAACGGCATGGAGAGCGCT
GGGAACAACACAAGTTATTGTTGAAACAATTGCGTCAGGTGAGTTGGAAG
CCTTGTTTTTACAAGCGCGTTGCGGTTACGTCTATCTATGAAGCCTCAAA
AATTGCAATCGTTTCTTTTGGTTTATCATCAGAAGGAATTAAAACAAATA
CAAATTATACACATTGTGCGATTTTTTAAAGCGAACACTATTAGTGGTGG
GAAATTGAAATTTGGTCACAAAATCGAactattttgcagaattttacCAC
CATACGTCAAACAGTGTGTAGGggtcaaagtatctcaaataaTTATGTAA
GAACACAAACagcaatttattttattttctatcagAAAAAAGATCCGATC
TTGCTGTCGTGTGGGATGCCGTCCGTGTTACGTGAGCTTCACGGCGTCAC
AAAGCAATGTCGTGTCGTGATCAATCCACTTCCCGTATTTCTGATTGACC
GGTTGCAACGACGTCGGGTAATCAGTACACGGTCACTCATCCAAAACTAC
GGTAAGCACTAAGTGAGAAATCTTTTATTACATTTACTTTTGAGAAGAAG
GTAGGGGTTTGTTTGGTGAAAGCAAAAGGATCTAAGATCTTTGATTGTGT
TCCACGAGGAAGCTATTCCATTCgtttattcattcattcgttcatGCATT
CATTGATTTATTCCGTcaatcattcattcattcattcattcattccgtca
atcattcattcattccgtcaatcattcattcattcattcattccgTCAAt
cattcatttattcattcCGCCAAtcattcatttattcattcattccgcca
ttcattcattcattcattcattccgtcaatcattcattcattcattcatt
ccgtcattcgttcgttcgttcgttcgttcgttcgttcgttcgttcgttcg
ttcgtttgttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgtt
cgttcattcattcgttaattcattcattcattaattcattcattcattaa
ttcattcattcattaattCATCCATTCTTTTATTTATTAGGAATCACCGT
AACAAATCCACCGCCACCCAGAGCTTGGCCTCCCAAGATGCGCAAGCCAC
GCGGTAAACAGCGCCGCAGGGTATGTAACGCCAATATCGCGCGAAGGAAG
AAGTTAGAAGGACAAACGTCCACAATCTCTACTTTACGTAAGTTTCTATT
ATTTAAATTCTGAGTTGATACTTGTTATACtgtgtttcttttttatgcCT
TTATGCAAAATTGTTTGGTACGTTAAAGTTGATTAACCTCTGAATTGATT
GAAGTTGTATTTCAGTTGCATTTCCTTATTCCATTTTCAGCTGTTCCCTC
AACAATACAAGTCACACACTCACACACGGGAAATACCTTACCTGCTCAAA
GCGCCTCTCCCTTGAGTAACATCCATCTACCGAAAGACAATGTGAACAAA
ACACCTTCACCTTCTCGCTGCGCTAATGGAAACCGACCGTCTGAAACATC
AAAAACTCAAACAGACAGTCCTTCTTCAAACAGTCAAGATAGCCCTACCC
TTTCCAAAACAGCAGCTCGCATCTTATCTGCCATCTCGTCCCCTTTTGTG
AGTTCTTTTCATCGTAAACGGACGCTCAGTGATACGATTTCGGACGACAC
GATCAGCGTCAAATCTTCGCCCACCGATAAACTTCTCGTGCGTATCGATC
GTAACAAAACTCGTTCATTTTCCGATAGTATATTTACAGACAAAGCGACA
CTCGGGAAAACTCGGTCGTTGTCGGTCACGGACACGGTACGAGACGACGA
AAGCGAAGTGACTCTCAGCGCCGACGAATCTTGTGACGAAGACGAATATC
TCAGCGACGAAATTCCCTTCCCGACTGTTAAACGACTTTTACCGACAATC
AACGAGAATGAtaacaagaaactaaaagaCACAAAATTGACACATTTCTT
CAACGAGAAAAAGAAACCGACGACGACAAACAATAAAAACACCGacaaac
aacctttacatatacGGCGTCGAAACTCTGATTTAAAAACAATCGTTAAA
AATAACCATAAAATTTCCGATTGGTTTAGACCTGCCACGACGAAAAATCC
AATATCCTCATCTGGAAACCATCCGCCTTTGAAACGTTCATCACCGCCCA
ACGGTAACAACAACGCCACTGTTCCGCCCTCTCTATTTTACAATAAAACA
CCTCCATTGAATTCAAATGATAACAATACAGCATCATCCTCAACCGTTGA
TTCTCATCCTTCGAAAGTAAACAATTATACGAATTCTAAATCACAAACAA
TGGGACACAATAAAAACATGCCCACGAACTTCAATAACAAATCGCCGTCT
TCATTTTCTACAACTTCAACGAACAATAACAACAGGGCGGGGAAGCAAAC
ATTAAAACGCCCTATTCCCGCCCAAGTACAGTGGATTTCTTCAGATAGTG
AGGCAGACAGTCCGCCCGCCAAAAAATCGATTCTTATAACACGCCCGCAT
CCTGGGAAGAAATCAAGTTGCTCTAAAATCTCCAGTGCAAATAAAAGACA
CGATTCGCTAGACTGTCAGCCAGGCCCTTCCTCGTATTATATATCAGACT
AGTAACCTTAACTTTCTTCCGCTTTATCCTCTATCGTAATTTTCTCAGGA
ATGTTCAGACTTTGCTAACAACTATTTTTTGACGAACAAATGGCCGGTCA
TTCAACTTGAAGATACACTCCTGACTGGGTAATTAAATTTCTAATTTAAC
TTAAACTTTGTGTTAAGGAAATTGGCAGACGACTTCTTCTAAAATAGGCA
AAAATTGGGAATATGATTTAAAGGTCCagtttttcaaattcattttcaaa
ttttctgaaaatttgaaactttgaaTACATCCACCTAAAGTTATCTTTCT
AAcgagatatttttttattgtatctttcaaaatgttttaacGGCCCGttt
tttttacatgaaatttaattaaatttgGGAATAACTTTTGCTCGCGATGA
TCTATTCTAATCCATTTTTTCGGATATTCAGTTTTCACATTGTTTATATT
TTGTAGATATTTTTATCCTAATTAAAAACGGTTGCATTTTTGGTACTAAA
CTTGTCTGAATTCTATAAGTGGAAAAATCCATTCGTCATATTTTATAAGG
GCGTAAAGGGCCGACAAGGTATTTCATTTCTTGTTGAAGCACTTCCACCC
ttttgggacgagatggagtctTTACAAGCACTTGGTCgattggttggtcg
ttaaccagtaataaaacaatttttattacttcaaataaccaattattgaa
gtatcttataaaaactccatctcatctggcaAAAAGCCTCTTTTTCACAG
ACAGAGCTTTAAAATTCGGGATGAGCCGGAGTTTtaacaagatacttcac
taattggtcatttaaagtgatagagatgacgcgttttttagaaaaagtaa
gaagattcttttattacatcttaacgaccaaccaaatcaaataagagctt
gtaaaaactccagcttgtccctaaAATTCATACCGGAAACTTATCAGTCA
ACTTACTATTCGGTCACGGGTCAAATTTTGATTGATGCAATACAAGAGTC
GATTAGTCCAGTAGAAATTCGTCCATAATAgggtcaacctagaaaaaaat
attataaaaggtttctatataccgttggaaagataattttatcagctttc
aaatgaggggtagagtcaatttttttgtcatggggaaaaaaagttatgga
c
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034654XLOC_034654Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054998-exon-scaffold_248-1491911889:212850..213113TCONS_00054998-exon-scaffold_248-1491911889:212850..213113Clytia hemisphaericaexon
TCONS_00054998-exon-scaffold_248-1510915933:212850..213113TCONS_00054998-exon-scaffold_248-1510915933:212850..213113Clytia hemisphaericaexon
TCONS_00054998-exon-scaffold_248-1575043694:212850..213113TCONS_00054998-exon-scaffold_248-1575043694:212850..213113Clytia hemisphaericaexon
TCONS_00054998-exon-scaffold_248-1491911889:213561..213652TCONS_00054998-exon-scaffold_248-1491911889:213561..213652Clytia hemisphaericaexon
TCONS_00054998-exon-scaffold_248-1510915933:213561..213652TCONS_00054998-exon-scaffold_248-1510915933:213561..213652Clytia hemisphaericaexon
TCONS_00054998-exon-scaffold_248-1575043694:213561..213652TCONS_00054998-exon-scaffold_248-1575043694:213561..213652Clytia hemisphaericaexon
TCONS_00054998-exon-scaffold_248-1491911889:214531..214632TCONS_00054998-exon-scaffold_248-1491911889:214531..214632Clytia hemisphaericaexon
TCONS_00054998-exon-scaffold_248-1510915933:214531..214632TCONS_00054998-exon-scaffold_248-1510915933:214531..214632Clytia hemisphaericaexon
TCONS_00054998-exon-scaffold_248-1575043694:214531..214632TCONS_00054998-exon-scaffold_248-1575043694:214531..214632Clytia hemisphaericaexon
TCONS_00054998-exon-scaffold_248-1491911889:214944..215068TCONS_00054998-exon-scaffold_248-1491911889:214944..215068Clytia hemisphaericaexon
TCONS_00054998-exon-scaffold_248-1510915933:214944..215068TCONS_00054998-exon-scaffold_248-1510915933:214944..215068Clytia hemisphaericaexon
TCONS_00054998-exon-scaffold_248-1575043694:214944..215068TCONS_00054998-exon-scaffold_248-1575043694:214944..215068Clytia hemisphaericaexon
TCONS_00054998-exon-scaffold_248-1491911889:216720..216823TCONS_00054998-exon-scaffold_248-1491911889:216720..216823Clytia hemisphaericaexon
TCONS_00054998-exon-scaffold_248-1510915933:216720..216823TCONS_00054998-exon-scaffold_248-1510915933:216720..216823Clytia hemisphaericaexon
TCONS_00054998-exon-scaffold_248-1575043694:216720..216823TCONS_00054998-exon-scaffold_248-1575043694:216720..216823Clytia hemisphaericaexon
TCONS_00054998-exon-scaffold_248-1491911889:217530..217643TCONS_00054998-exon-scaffold_248-1491911889:217530..217643Clytia hemisphaericaexon
TCONS_00054998-exon-scaffold_248-1510915933:217530..217643TCONS_00054998-exon-scaffold_248-1510915933:217530..217643Clytia hemisphaericaexon
TCONS_00054998-exon-scaffold_248-1575043694:217530..217643TCONS_00054998-exon-scaffold_248-1575043694:217530..217643Clytia hemisphaericaexon
TCONS_00054998-exon-scaffold_248-1491911889:218230..218437TCONS_00054998-exon-scaffold_248-1491911889:218230..218437Clytia hemisphaericaexon
TCONS_00054998-exon-scaffold_248-1510915933:218230..218437TCONS_00054998-exon-scaffold_248-1510915933:218230..218437Clytia hemisphaericaexon
TCONS_00054998-exon-scaffold_248-1575043694:218230..218437TCONS_00054998-exon-scaffold_248-1575043694:218230..218437Clytia hemisphaericaexon
TCONS_00054998-exon-scaffold_248-1491911889:218735..218900TCONS_00054998-exon-scaffold_248-1491911889:218735..218900Clytia hemisphaericaexon
TCONS_00054998-exon-scaffold_248-1510915933:218735..218900TCONS_00054998-exon-scaffold_248-1510915933:218735..218900Clytia hemisphaericaexon
TCONS_00054998-exon-scaffold_248-1575043694:218735..218900TCONS_00054998-exon-scaffold_248-1575043694:218735..218900Clytia hemisphaericaexon
TCONS_00054998-exon-scaffold_248-1491911889:219440..219586TCONS_00054998-exon-scaffold_248-1491911889:219440..219586Clytia hemisphaericaexon
TCONS_00054998-exon-scaffold_248-1510915933:219440..219586TCONS_00054998-exon-scaffold_248-1510915933:219440..219586Clytia hemisphaericaexon
TCONS_00054998-exon-scaffold_248-1575043694:219440..219586TCONS_00054998-exon-scaffold_248-1575043694:219440..219586Clytia hemisphaericaexon
TCONS_00054998-exon-scaffold_248-1491911889:219740..219996TCONS_00054998-exon-scaffold_248-1491911889:219740..219996Clytia hemisphaericaexon
TCONS_00054998-exon-scaffold_248-1510915933:219740..219996TCONS_00054998-exon-scaffold_248-1510915933:219740..219996Clytia hemisphaericaexon
TCONS_00054998-exon-scaffold_248-1575043694:219740..219996TCONS_00054998-exon-scaffold_248-1575043694:219740..219996Clytia hemisphaericaexon
TCONS_00054998-exon-scaffold_248-1491911889:220479..222150TCONS_00054998-exon-scaffold_248-1491911889:220479..222150Clytia hemisphaericaexon
TCONS_00054998-exon-scaffold_248-1510915933:220479..222150TCONS_00054998-exon-scaffold_248-1510915933:220479..222150Clytia hemisphaericaexon
TCONS_00054998-exon-scaffold_248-1575043694:220479..222150TCONS_00054998-exon-scaffold_248-1575043694:220479..222150Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_248supercontigscaffold_248:212850..222150 +
Expression
No biomaterial libraries express this feature.
Blast
[Close]
BLAST of TCONS_00054998 vs. Swiss-Prot (Human)
Match: G2E3 (G2/M phase-specific E3 ubiquitin-protein ligase OS=Homo sapiens GN=G2E3 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 6.529e-23
Identity = 49/116 (42.24%), Postives = 75/116 (64.66%), Query Frame = 2 
Query:  578 LRTQANNAG-YFFRCPTCNNQELFQKEMSTFGVYIPQRDAAWE-KNNAFGDLLESYDKCDSAECRCPFGKSHIEDEGDWDLLRCYHCGQSGVHRACLGADVTPEYEFVCRDCNDVV 919
            L+ QA NAG +FFRC  CNN ++FQKEM   G++IP++DA+WE + NA+ +LL+ Y++CD   CRC  G+ +   +  W++ RC  CG SG H AC  +  + E  + C +C  ++
Sbjct:  175 LQVQAINAGVFFFRCTICNNSDIFQKEMLRMGIHIPEKDASWELEENAYQELLQHYERCDVRRCRCKEGRDYNAPDSKWEIKRCQCCGSSGTHLAC-SSLRSWEQNWECLECRGII 289
The following BLAST results are available for this feature:
BLAST of TCONS_00054998 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
G2E36.529e-2342.24G2/M phase-specific E3 ubiquitin-protein ligase OS... [more]
back to top