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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055009 ID=TCONS_00055009|Name=TCONS_00055009|organism=Clytia hemisphaerica|type=transcript|length=5248bpRun BLAST on NCBI transcript from alignment at scaffold_248:321409..329815+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00055009 ID=TCONS_00055009|Name=TCONS_00055009|organism=Clytia hemisphaerica|type=transcript|length=8407bp|location=Sequence derived from alignment at scaffold_248:321409..329815+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00055009 vs. Swiss-Prot (Human)
Match: GTR8 (Solute carrier family 2, facilitated glucose transporter member 8 OS=Homo sapiens GN=SLC2A8 PE=1 SV=3) HSP 1 Score: 245.743 bits (626), Expect = 1.301e-69 Identity = 169/446 (37.89%), Postives = 256/446 (57.40%), Query Frame = 1
Query: 421 FGYTMGYTSPTQKDIEKELMSTTQF-----SWFASLVAIGAIIGSTLGAIMIEKYGRKTTIMLISLVHVPGWCLICYGHSVEILYFGRFLTGIGVGVGSLAVPMYIAEVASARLRGGLGSINQFAITIGILMVYLVGYCLSWRWAAIIPXXXXXXXXXXXXXXPESPRWLLANNKRHLALLELSKLRGQFYDSEEECFEIESNLDQQGKISLSDFKEPALYRPFIICSMLMLFQQFTGINAIILYCTKIFDLAGLHYPTVISLAVAATQILFTGIACLVVDKSGRRILLLAGSVVMFLCQFLLGVYFDLIE-VDGDDNKISIFGKFSHTFSPHKISI----LAISCIVIYIAIFSIGWGPLPWLLMSELLPPKAKGLVGGFVTLINWTCVFITTNLFHKMVSTFFAQGTXXXXXXXXXXXXXXXXXYVPETKGKTLEEIEEIFAQR 1728
FG+ +GY+SP +++ + SWF ++V +GA G LG ++++ GRK +++L S+ V G+ +I V +L GR LTG+ GV SL P+YI+E+A +RG LGS Q + +GIL+ YL G+ L WRW A++ + +LM+LLM MPE+PR+LL ++R A+ L L G E+ +E + + + L+ ++P +Y+PFII LM FQQ +G+NA++ Y IF+ A ++ S+ V Q+LFT +A L++D++GRR+LL+ VVM G YF L + G+ + ++I S P S+ LA+ + ++IA F++GWGP+PWLLMSE+ P KG+ G L NW F+ T F ++ G FW + F + S LFTLF VPETKGKTLE+I F R
Sbjct: 40 FGFALGYSSPAIPSLQRAAPPAPRLDDAAASWFGAVVTLGAAAGGVLGGWLVDRAGRKLSLLLCSVPFVAGFAVITAAQDVWMLLGGRLLTGLACGVASLVAPVYISEIAYPAVRGLLGSCVQLMVVVGILLAYLAGWVLEWRWLAVLGCVPPSLMLLLMCFMPETPRFLLTQHRRQEAMAALRFLWG-----SEQGWE-DPPIGAEQSFHLALLRQPGIYKPFIIGVSLMAFQQLSGVNAVMFYAETIFEEAKFKDSSLASVVVGVIQVLFTAVAALIMDRAGRRLLLVLSGVVMVFSTSAFGAYFKLTQGGPGNSSHVAISAPVSA--QPVDASVGLAWLAVGSMCLFIAGFAVGWGPIPWLLMSEIFPLHVKGVATGICVLTNWLMAFLVTKEFSSLMEVLRPYGAFWLASAFCIFSVLFTLFCVPETKGKTLEQITAHFEGR 477 HSP 2 Score: 239.965 bits (611), Expect = 1.186e-67 Identity = 165/451 (36.59%), Postives = 251/451 (55.65%), Query Frame = 2
Query: 3071 FGYNMGFPSPVQVTIDTKSNKDHGLLTDEEFSWFNSLVCIGAICGSFIGSFTLDRFGRKNTILSTTFFFTVGWCLIASAQNPAMFFIGRIICGMGTGVSSLCVSVYISEIASSRYRGGLCSLQQLSVTIGVFAGFLVGTYAPWRWAAVFPIIVTVIMTVGMFFMPESPRFDLVKGKRQTALKNLQWLRGPMYDATSEIEEILDNLSKADDTKMSITEFTTPALYRPLMIGALAMVFQQFCGINAVIGYCNEIFKXXXXXXXXXXXXXXXXXXXXFTLVACFMVDKAGRRVLLAVGGFSMFVVLFLMGVYYDITVFDNPPEHQIDIFGHRTVPVSE--------ISWLAITCVIIFMIMFSIGWGPIPWMLMAELFPPKARDVAGALCNVVNWLSAFLIMKFFPQMKVALKDQGVFWFYXXXXXXXXXXXXXIIPETKGKTLEEIEQYFNNN 4399
FG+ +G+ SP ++ ++ L D SWF ++V +GA G +G + +DR GRK ++L + F G+ +I +AQ+ M GR++ G+ GV+SL VYISEIA RG L S QL V +G+ +L G WRW AV + +M + M FMPE+PRF L + +RQ A+ L++L G E+ ++ + + P +Y+P +IG M FQQ G+NAV+ Y IF+ A +SS+ S++V ++Q++FT VA ++D+AGRR+LL + G M G Y+ +T + I + PVS ++WLA+ + +F+ F++GWGPIPW+LM+E+FP + VA +C + NWL AFL+ K F + L+ G FW +AF + S LF LF +PETKGKTLE+I +F
Sbjct: 40 FGFALGYSSPAIPSLQ-RAAPPAPRLDDAAASWFGAVVTLGAAAGGVLGGWLVDRAGRKLSLLLCSVPFVAGFAVITAAQDVWMLLGGRLLTGLACGVASLVAPVYISEIAYPAVRGLLGSCVQLMVVVGILLAYLAGWVLEWRWLAVLGCVPPSLMLLLMCFMPETPRFLLTQHRRQEAMAALRFLWGS--------EQGWEDPPIGAEQSFHLALLRQPGIYKPFIIGVSLMAFQQLSGVNAVMFYAETIFEEAKFKDSSLASVVVGVIQVLFTAVAALIMDRAGRRLLLVLSGVVMVFSTSAFGAYFKLTQGGPGNSSHVAI----SAPVSAQPVDASVGLAWLAVGSMCLFIAGFAVGWGPIPWLLMSEIFPLHVKGVATGICVLTNWLMAFLVTKEFSSLMEVLRPYGAFWLASAFCIFSVLFTLFCVPETKGKTLEQITAHFEGR 477 The following BLAST results are available for this feature:
BLAST of TCONS_00055009 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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