TCONS_00055010 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055010
Unique NameTCONS_00055010
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length507

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055010 ID=TCONS_00055010|Name=TCONS_00055010|organism=Clytia hemisphaerica|type=transcript|length=507bp
TTTGGTATGTATTGGAGCCATTTGTGGGTCTTTCATTGGATCCTTCACTT
TGGATCGGTTTGGGAGAAAGAATACTATTCTGTCAACAACATTCTTCTTC
ACTGTCGGATGGTGTCTGATTGCTTCTGCTCAAAATCCTGCAATGTTTTT
CATTGGTCGTATAATTTGTGGTATGGGGACTGGAGTCTCATCTCTCTGTG
TCTCTGTAAGTATACAGGCTGAATCATTTGAGGCGTGCAATAGCACACAC
ACGCTTCTGCACACACCATTAATCTAGACGTGGATAGTATGCCTTATCAC
ATGTCTAAATTAGCAAAACTAATATTTTAGGACAGTTTAGAGTCTGATTG
GCCACACGCCTGGAGTTTTCAACGACAAAGTCTAAGTATAGTTAGCACTG
TAGAACATCCACAAGCATATATTAAGACTATTGCTGGCTTTCACCTCAAC
TTGAGTATAGTTATGATAACAATACACATCCCTGCTTCAGTGTCAATGAG
AATTTTT
Run BLAST on NCBI

transcript from alignment at scaffold_248:326363..326869+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055010 ID=TCONS_00055010|Name=TCONS_00055010|organism=Clytia hemisphaerica|type=transcript|length=507bp|location=Sequence derived from alignment at scaffold_248:326363..326869+ (Clytia hemisphaerica)
TTTGGTATGTATTGGAGCCATTTGTGGGTCTTTCATTGGATCCTTCACTT
TGGATCGGTTTGGGAGAAAGAATACTATTCTGTCAACAACATTCTTCTTC
ACTGTCGGATGGTGTCTGATTGCTTCTGCTCAAAATCCTGCAATGTTTTT
CATTGGTCGTATAATTTGTGGTATGGGGACTGGAGTCTCATCTCTCTGTG
TCTCTGTAAGTATACAGGCTGAATCATTTGAGGCGTGCAATAGCACACAC
ACGCTTCTGCACACACCATTAATCTAGACGTGGATAGTATGCCTTATCAC
ATGTCTAAATTAGCAAAACTAATATTTTAGGACAGTTTAGAGTCTGATTG
GCCACACGCCTGGAGTTTTCAACGACAAAGTCTAAGTATAGTTAGCACTG
TAGAACATCCACAAGCATATATTAAGACTATTGCTGGCTTTCACCTCAAC
TTGAGTATAGTTATGATAACAATACACATCCCTGCTTCAGTGTCAATGAG
AATTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034656XLOC_034656Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055010-exon-scaffold_248-1491911889:326363..326869TCONS_00055010-exon-scaffold_248-1491911889:326363..326869Clytia hemisphaericaexon
TCONS_00055010-exon-scaffold_248-1510915933:326363..326869TCONS_00055010-exon-scaffold_248-1510915933:326363..326869Clytia hemisphaericaexon
TCONS_00055010-exon-scaffold_248-1575043694:326363..326869TCONS_00055010-exon-scaffold_248-1575043694:326363..326869Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_248supercontigscaffold_248:326363..326869 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.570614	0.177512	0.354254	0.981541	0	0.133122	0	0.290333	0	0	0	0.244888	0	0	0	0	0	0	1.0694	0	0.457105	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055010 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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