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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055016 ID=TCONS_00055016|Name=TCONS_00055016|organism=Clytia hemisphaerica|type=transcript|length=2422bp
AACCGACACAAACCTGTGAAAACCATTCTCTAAACTATTATTTGAGTATG
GTGTACACTGGACGAGTGATAACTGGCGTTGGAGCTGGGATGAGCTCCTT
AGTTGTGCCTGTGTACATTGCGGAAATTGCATCAGCGCGCATGCGTGGAG
CACTTGGAAACATCAATCAGTTGTCAATCAATTTTGGATTTGTTGTAGCC
TATTTGACAGGATACAAACAAAATCTTCCAACAACAGCTTACGTACCAAT
CGGAATCTCAATTCTCAACCTTATTCTGATGGTTTTCTTCTTACCTGAGA
CACCGCGATATCTTTTGGCAAACAACAGACGACATGATGCCATCCTTGCG
TTGTATTGGCTAAGAGGTCAAGACTATCCAGTGGAAGaggaatgttttga
aattgaaggCCATgttaattttgGAACTCAAGAGCAATGGCAATGGAAGG
ATCTGAAAAGTTCCACATTCTACTGGCCGCTCATCATTgcactttttttg
atgtttttccaAGAATTCAGTGGTATAAATTGTATCTTATTTTACTGCac
ctcaattttttttgcttctgGGATTGGTGCTCAATTGAAACCTGGAGATA
CCCATATATTGGATACTTTGACAAAAGGCTCAGAAGAATATGCAATATAT
GTGTGTTTCACACTGTTCATTTTCACCGGAATTTCCTGCTTTTTAGTGGA
CCGGTTTGGACGCCGAAAACTCCTCTTATCCGGTAGTGTTGGAATGTTTA
TCTCACTAATTCTAGTAAGTGTGTACGTCCACTCTTATCCTGTTTATTAT
AATAATGTTGATGACATTTCTAATTTCTTTTCGAAACAAGAAAACACAAC
ATATGCCATTTTAGCTTTTGTGTGTATACTCTGTTTTATTGCAATGTTCT
CAATCGGATGGGGCCCGTTGCCATGGTTACTCATGTCTGAATTATTCCCA
ATCAAGACAAGAGGTATTGCAACTACAATTGTCACTTTATCAAACTGGTT
ATTTGTGTTTACAACGACTTCATCTTTCTGTTTTCTCGTGAATAAAATNN
NNNNNNNNNNNNGCTCAATTGAAACCTGGAGATACACATATATTGGATAC
TTTGACGAAAGGCTCAGAAGAATATGCAATATATGTGTGTTTCACACTGT
TCATTTTCACCGGAATTTCCTGCTTTTTAGTGGACCGGTTTGGACGCCGA
AAACTCCTCTTATCCGGTAGTGTTGGAATGTTTATCTCACTAATTCTAGT
AAGTGTGTACGTCCACTCTTATCCTGTTTATTATAATAATGTTGATGACA
TTTCTAATTTCTTTTCGAAACAAGAAAACACAACATATGCCATTTTAGCT
TTTGTGTGTATACTCTGTTTTATTGCAATGTTCTCAATCGGATGGGGCCC
GTTGCCATGGTTACTCATGTCTGAATTATTCCCAATCAAGACAAGAGGTA
TTGCAACTACAATTGTCACTTTATCAAACTGGTTATTTGTGTTTACAACG
ACTTCATCTTTCTGTTTTCTCGTGAATAAAATTCATATTTATGGTGCCAT
GTGGATCTTTGCAACAATTGTATTTATTGGTTTCTTCTTTACCCTGTTTT
TTGTACCGGAAACCCGGGGTCGCCCACTTGAAGAAGTAGCAGAACTTTTT
ATTAGACGGAAGGTGTTGCAGGTCAGCATTCTGTGGACCAGACATGATGC
GTCAATGTAATCACCTATCAATTTGTTGGCAATGACTGACTGATCACCAC
ATTAATAAATTGGAAAACAATTTccatttttaatgatttttaattttttt
tgcacaacACACCTCTTATGCTGAAAGTtacacccccttttcacagaccc
ggtaggattttttcagccagtgggaataaaataacggactgaaactttat
ggggattgatatttccatatttttcatggctgggtatttcaattcttttg
ttttcaagtcagaaaattcagtgagcatggaaaatagcataataatttgc
agtgaggattggtttatctGATTACTTTCAGTGTGGACAAAAATGGGCGG
CTAATTTTCCATCGGAGACGGTATTTTGGCTAGTTTTTCTAGTGGGAAGG
GGTCTCAatgagtctgtgagaagggggtgtaaagttgttctttcttttct
tttgtgaaATGATGTTCTTgatgttgttgttgaaattagtgttttgtttt
gattatttaaaTACATTTGATAGTTgacaattattttttcaatcattttt
aaaataatcttaATTTATGTATTATGACCTTAGAATCTAAATTAAACCAA
TGAATACAAGAGTAAATcacttttattttcagtttttgtatttGCAATGT
ATCTTTGAATGATTTGTGATGTTACAATGTTACAATTTCTATATAGGTTG
CTATATATCTTTTTTACATATT Run BLAST on NCBI transcript from alignment at scaffold_248:335463..339433+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055016 ID=TCONS_00055016|Name=TCONS_00055016|organism=Clytia hemisphaerica|type=transcript|length=3971bp|location=Sequence derived from alignment at scaffold_248:335463..339433+ (Clytia hemisphaerica)
AACCGACACAAACCTGTGAAAACCATTCTCTAAACTATTATTTGAGTATG
GTGTACACTGGACGAGTGATAACTGGCGTTGGAGCTGGGATGAGCTCCTT
AGTTGTGCCTGTAGGTTTTCTCTTACAATAACACAAATAGCTCTATATCT
GATAAGAAGTAGGCCCAGAACCGTCCGTTAGGGTTACCAAGATTTAAGAT
TATTTAGTAtttgttgacccccccccctcctcaattaatatttttttaat
taaaccTTACTTCGTTATGATATGTACTTCAATATGTATCTGATTATGTA
CACAAGCATGAATACCAATCCTTGCCAATCAGATCACTTTTGATATTTGA
CAGTATTtccttttgacttttttcaaactccaaATTAAACCACTTCGTTG
AATCAAGGTTGATAGGTGTATGAGATTTAGTcacttttaatatttttatc
cccataaTTGATCTCCAaagttttctttattaaaatatcacaaaagattt
tttctttactCCATGTTCAGGTGTACATTGCGGAAATTGCATCAGCGCGC
ATGCGTGGAGCACTTGGAAACATCAATCAGTTGTCAATCAATTTTGGATT
TGTTGTAGCCTATTTGACAGGATACAAACAAAATCTTCCAACAACAGGTT
TTGTACTATTGCCATCATATTATCAATAACATATTATATAGGGAAGTCAA
GATCTTATATATTTACAGCTGAGGTCTAGTTATGCCTGTTGAATTATGTC
TACCAAACATAATACTCAGTTCAAACTGGAGGTCAAGGAAATGTAACTTT
TGCATACTTTACCTTTCAGCATAATTTTCATTCTTACAATTTATTTTAAC
TGAACCAGATTCCAAATTATATTCACAACAGCTTACGTACCAATCGGAAT
CTCAATTCTCAACCTTATTCTGATGGTTTTCTTCTTACCTGAGACACCGC
GATATCTTTTGGCAAACAACAGACGACATGATGCCATCCTTGCGTTGTAT
TGGCTAAGAGGTCAAGACTATCCAGTGGAAGaggaatgttttgaaattga
aggCCATgttaattttggtattttttcacttttgcttttatTATTCACTT
TATTAACCACTCAACTTGAAGAaaggattttgtttttttcctcaAAGAGT
TCTTTGATATCAACTTTTCTCCAATTTTAGGCTAAGGGTTTTTTCTTAGA
CTACaatcccttctcacagacccagtgagatttttttcagccatttgGGC
TAAAAACAACGAACCAAAAATTGATGGGATtgattttcctatttttctaa
tggctggggatttgaattcgaTTGTTTGCGAGCCAGAGatctcagtgggg
atagaaaaagtagcataatattttgtacTAAGGATTTGCTtaacactctt
ttttttataagcaaacgGGAAATTCAGGTCAAGGCTCAAcatgcttagca
aaatctcattttcagccttaatttatgcttatttatcTGCTTAGACttcg
attttttgattttctttgggtttaagaaaattttgtatttttaagtgGGA
ATTGATTCAGCTCAAAGAATGAAAGTTTTATCTAAAATTTGACACTGCAG
GTGAAAATCTTTGGTCCAAGAAAGCTCAAGCAGCTTTAAAAGCaacccta
aaaaggtcagcgCTTTAGAAAAACTGCactaatttttgcatttcagcttg
gaggtatgcttGGAATTATGCTTATTTTCAACGGGGACAAAANCTCAAGC
AGCTTTAAAAGCaaccctaaaaaggtcagcgCTTTAGAAAAACTGCacta
atttttgcatttcagattagagtataattttccactggggacgatatttt
ggccaatttttcaggTGGGAAGgtgtcccagtgggtctgtgagaaagggg
tgtttagACTTTGGTAAAACATTTAGTACTTTTAGAGTGGTTAACCTTAA
cattaaatgaatattttttcagGAACTCAAGAGCAATGGCAATGGAAGGA
TCTGAAAAGTTCCACATTCTACTGGCCGCTCATCATTgcactttttttga
tgtttttccaAGAATTCAGTGGTATAAATTGTATCTTATTTTACTGCacc
tcaattttttttgcttctgGGATTGGTGCTCAATTGAAACCTGGAGATAC
CCATATATTGGATACTTTGACAAAAGGCTCAGAAGAATATGCAATATATG
TGTGTTTCACACTGTTCATTTTCACCGGAATTTCCTGCTTTTTAGTGGAC
CGGTTTGGACGCCGAAAACTCCTCTTATCCGGTAGTGTTGGAATGTTTAT
CTCACTAATTCTAGTAAGTGTGTACGTCCACTCTTATCCTGTTTATTATA
ATAATGTTGATGACATTTCTAATTTCTTTTCGAAACAAGAAAACACAACA
TATGCCATTTTAGCTTTTGTGTGTATACTCTGTTTTATTGCAATGTTCTC
AATCGGATGGGGCCCGTTGCCATGGTTACTCATGTCTGAATTATTCCCAA
TCAAGACAAGAGGTATTGCAACTACAATTGTCACTTTATCAAACTGGTTA
TTTGTGTTTACAACGACTTCATCTTTCTGTTTTCTCGTGAATAAAATNNN
NNNNNNNNNNNGCTCAATTGAAACCTGGAGATACACATATATTGGATACT
TTGACGAAAGGCTCAGAAGAATATGCAATATATGTGTGTTTCACACTGTT
CATTTTCACCGGAATTTCCTGCTTTTTAGTGGACCGGTTTGGACGCCGAA
AACTCCTCTTATCCGGTAGTGTTGGAATGTTTATCTCACTAATTCTAGTA
AGTGTGTACGTCCACTCTTATCCTGTTTATTATAATAATGTTGATGACAT
TTCTAATTTCTTTTCGAAACAAGAAAACACAACATATGCCATTTTAGCTT
TTGTGTGTATACTCTGTTTTATTGCAATGTTCTCAATCGGATGGGGCCCG
TTGCCATGGTTACTCATGTCTGAATTATTCCCAATCAAGACAAGAGGTAT
TGCAACTACAATTGTCACTTTATCAAACTGGTTATTTGTGTTTACAACGA
CTTCATCTTTCTGTTTTCTCGTGAATAAAATTCATATTTATGGTGCCATG
TGGATCTTTGCAACAATTGTATTTATTGGTTTCTTCTTTACCCTGTTTTT
TGTACCGGAAACCCGGGGTCGCCCACTTGAAGAAGTAGCAGAACTTTTTA
TTAGACGGAAGGTGTTGCAGGTCAGCATTCTGTGGACCAGACATGATGCG
TCAATGTAATCACCTATCAATTTGTTGGCAATGACTGACTGATCACCACA
TTAATAAATTGGAAAACAATTTccatttttaatgatttttaatttttttt
gcacaacACACCTCTTATGCTGAAAGTtacacccccttttcacagacccg
gtaggattttttcagccagtgggaataaaataacggactgaaactttatg
gggattgatatttccatatttttcatggctgggtatttcaattcttttgt
tttcaagtcagaaaattcagtgagcatggaaaatagcataataatttgca
gtgaggattggtttatctGATTACTTTCAGTGTGGACAAAAATGGGCGGC
TAATTTTCCATCGGAGACGGTATTTTGGCTAGTTTTTCTAGTGGGAAGGG
GTCTCAatgagtctgtgagaagggggtgtaaagttgttctttcttttctt
ttgtgaaATGATGTTCTTgatgttgttgttgaaattagtgttttgttttg
attatttaaaTACATTTGATAGTTgacaattattttttcaatcattttta
aaataatcttaATTTATGTATTATGACCTTAGAATCTAAATTAAACCAAT
GAATACAAGAGTAAATcacttttattttcagtttttgtatttGCAATGTA
TCTTTGAATGATTTGTGATGTTACAATGTTACAATTTCTATATAGGTTGC
TATATATCTTTTTTACATATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055016-exon-scaffold_248-1491911889:335463..335572 | TCONS_00055016-exon-scaffold_248-1491911889:335463..335572 | Clytia hemisphaerica | exon |
| TCONS_00055016-exon-scaffold_248-1510915933:335463..335572 | TCONS_00055016-exon-scaffold_248-1510915933:335463..335572 | Clytia hemisphaerica | exon |
| TCONS_00055016-exon-scaffold_248-1575043694:335463..335572 | TCONS_00055016-exon-scaffold_248-1575043694:335463..335572 | Clytia hemisphaerica | exon |
| TCONS_00055016-exon-scaffold_248-1491911889:335983..336109 | TCONS_00055016-exon-scaffold_248-1491911889:335983..336109 | Clytia hemisphaerica | exon |
| TCONS_00055016-exon-scaffold_248-1510915933:335983..336109 | TCONS_00055016-exon-scaffold_248-1510915933:335983..336109 | Clytia hemisphaerica | exon |
| TCONS_00055016-exon-scaffold_248-1575043694:335983..336109 | TCONS_00055016-exon-scaffold_248-1575043694:335983..336109 | Clytia hemisphaerica | exon |
| TCONS_00055016-exon-scaffold_248-1491911889:336344..336529 | TCONS_00055016-exon-scaffold_248-1491911889:336344..336529 | Clytia hemisphaerica | exon |
| TCONS_00055016-exon-scaffold_248-1510915933:336344..336529 | TCONS_00055016-exon-scaffold_248-1510915933:336344..336529 | Clytia hemisphaerica | exon |
| TCONS_00055016-exon-scaffold_248-1575043694:336344..336529 | TCONS_00055016-exon-scaffold_248-1575043694:336344..336529 | Clytia hemisphaerica | exon |
| TCONS_00055016-exon-scaffold_248-1491911889:337435..339433 | TCONS_00055016-exon-scaffold_248-1491911889:337435..339433 | Clytia hemisphaerica | exon |
| TCONS_00055016-exon-scaffold_248-1510915933:337435..339433 | TCONS_00055016-exon-scaffold_248-1510915933:337435..339433 | Clytia hemisphaerica | exon |
| TCONS_00055016-exon-scaffold_248-1575043694:337435..339433 | TCONS_00055016-exon-scaffold_248-1575043694:337435..339433 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_248 | supercontig | scaffold_248:335463..339433 + |
Blast
BLAST of TCONS_00055016 vs. Swiss-Prot (Human)
Match: GTR8 (Solute carrier family 2, facilitated glucose transporter member 8 OS=Homo sapiens GN=SLC2A8 PE=1 SV=3) HSP 1 Score: 165.622 bits (418), Expect = 1.135e-43 Identity = 113/327 (34.56%), Postives = 170/327 (51.99%), Query Frame = 3
Query: 87 GMSSLVVPVYIAEIASARMRGALGNINQLSINFGFVVAYLTGYKQN---LPTTAYVPIGISILNLILMVFFLPETPRYLLANNRRHDAILALYWLRGQDYPVEEECFEIEGHVNFGTQEQWQWKDLKSSTFYWPLIIALFLMFFQEFSGINCILFYCTSIFFASGIGAQLKPGDTHILDTLTKGSEEYAIYVCFTLFIFTGISCFLVDRFGRRKLL-LSGSVGMF-ISLILXXXXXXXXXXXXXXXDDISNFFSKQENTTYAILAFVCI--LC-FIAMFSIGWGPLPWLLMSELFPIKTRGIATTIVTLSNWLFVFTTTSSFCFLVN 1043
G++SLV PVYI+EIA +RG LG+ QL + G ++AYL G+ L VP + ++L++ F+PETPR+LL +RR +A+ AL +L G + E+ G ++ + L+ Y P II + LM FQ+ SG+N ++FY +IF + K S ++ V +FT ++ ++DR GRR LL LSG V +F S + ++ IS S Q LA++ + +C FIA F++GWGP+PWLLMSE+FP+ +G+AT I L+NWL F T F L+
Sbjct: 135 GVASLVAPVYISEIAYPAVRGLLGSCVQLMVVVGILLAYLAGWVLEWRWLAVLGCVPPSL----MLLLMCFMPETPRFLLTQHRRQEAMAALRFLWGSEQGWEDP--------PIGAEQSFHLALLRQPGIYKPFIIGVSLMAFQQLSGVNAVMFYAETIF----------------EEAKFKDSSLASVVVGVIQVLFTAVAALIMDRAGRRLLLVLSGVVMVFSTSAFGAYFKLTQGGPGNSSHVAISAPVSAQPVDASVGLAWLAVGSMCLFIAGFAVGWGPIPWLLMSEIFPLHVKGVATGICVLTNWLMAFLVTKEFSSLME 433 HSP 2 Score: 99.7525 bits (247), Expect = 6.277e-22 Identity = 71/189 (37.57%), Postives = 102/189 (53.97%), Query Frame = 1
Query: 1108 KGSEEYAIYVCFTLFIFTGISCFLVDRFGRRKLL-LSGSVGMF-ISLILXXXXXXXXXXXXXXXDDISNFFSKQENTTYAILAFVCI--LC-FIAMFSIGWGPLPWLLMSELFPIKTRGIATTIVTLSNWLFVFTTTSSFCFLVNKIHIYGAMWIFAXXXXXXXXXXXXXXPETRGRPLEEVAELFIRR 1659
K S ++ V +FT ++ ++DR GRR LL LSG V +F S + ++ IS S Q LA++ + +C FIA F++GWGP+PWLLMSE+FP+ +G+AT I L+NWL F T F L+ + YGA W+ + FTLF VPET+G+ LE++ F R
Sbjct: 289 KDSSLASVVVGVIQVLFTAVAALIMDRAGRRLLLVLSGVVMVFSTSAFGAYFKLTQGGPGNSSHVAISAPVSAQPVDASVGLAWLAVGSMCLFIAGFAVGWGPIPWLLMSEIFPLHVKGVATGICVLTNWLMAFLVTKEFSSLMEVLRPYGAFWLASAFCIFSVLFTLFCVPETKGKTLEQITAHFEGR 477
The following BLAST results are available for this feature:
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