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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055017 ID=TCONS_00055017|Name=TCONS_00055017|organism=Clytia hemisphaerica|type=transcript|length=4461bpRun BLAST on NCBI protein sequence of TCONS_00055017-protein >TCONS_00055017-protein ID=TCONS_00055017-protein|Name=TCONS_00055017-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1012bp MKEPCGDAEKMKSDLLESMQSLLTEFAPSRSENNQKLKTLSCNLEEIFKDRun BLAST on NCBI transcript from alignment at scaffold_248:340229..364325+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00055017 ID=TCONS_00055017|Name=TCONS_00055017|organism=Clytia hemisphaerica|type=transcript|length=24097bp|location=Sequence derived from alignment at scaffold_248:340229..364325+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_248:340229..364325+ >TCONS_00055017 ID=TCONS_00055017|Name=TCONS_00055017|organism=Clytia hemisphaerica|type=CDS|length=45585bp|location=Sequence derived from alignment at scaffold_248:340229..364325+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00055017 vs. Swiss-Prot (Human)
Match: TNG6 (Transport and Golgi organization protein 6 homolog OS=Homo sapiens GN=TANGO6 PE=1 SV=2) HSP 1 Score: 252.677 bits (644), Expect = 1.634e-68 Identity = 256/968 (26.45%), Postives = 442/968 (45.66%), Query Frame = 1
Query: 469 PNVLGAKDLKIVSGVLQLVLTYGVWPCLLKGIGKPLSNTLPTQLKPVKEE---------NRIKLKVMLQSLLILIKNKEFCSQVLPLCLGDIISGLVQLGYEPLK-AVASGNCHPICKHERSWCKEQLNDFIRSSYQPIIIKELMVLQKCAVNS--------RLSSIKWFLRCLGDHLSCCLMYDNGVINVIIAIL-----------DGMPDQVEWIHYDSIGKVISRPPQKLVTPVQYYQKIGPQLLQIL--AHKQGNQHHLMISISTICQIYQLHPSMCLANLIDPLVKPLADFHNTEKLT---MDSDELISTLASLSNLI--CTKASIIP-EQLMLFLSRLIPIL---FVINALEIEPLQTLRSKIKETIATICQK-NATKHVTELLFQALFNKY--SQHSQDETLV-INPGLTINLIERISDSTKNCKTHLVCELHTEI-KIDCFVELLRNEEMSGHRGDLFVALLQQMIRNVQLTASKEETLSTVSTSGKKEPSKPNTSLLNIDANLNLLKFNIE----LISTISAMMDSFGHSVLQNTPQIVAFIKSVLDLTQDTKVGISEDSFHENTVDXXXXXXXXXXX-XXXXXXXDFESLSTMVPSLDETSRSHGNTSSRAMANDVKTFIST-----------------------------------RGSVNANSYTQKTQRGTTE----------------NSEDNLTSER---CYIKALDELL----DPLLPTRGHALRQLSKLLKHKNTWALKDEEKLFEIFETNLRHDDTYLYLAAVDGLMTLVDVRHDVVLPLLCRRFIDMKTNELDMTASHNRMKLCEAIIRSLPICGEILPLYKDLLMNALSCGVLDADEFIRASSLSGIGELCHLLKFSIGSLIVEVFSCINHVVSTDKSIEVRKAGVQVVAQLLKGVDTALLQTIPNELLPIYRWLKIIKISEKDEMTSLHIDNALTILDEIMKELMTP 3048
P+ L K V VLQ V+T G+ P L+ G+G PL T+ V ++ +L ++LL + ++ S + GDI +GL QLG+ P K + + + + ER+ + L D + YQP+ ++EL++LQ S R + W R G LS LM NGV V+ IL D +W D I K+++ PQ+ ++P YY+ I PQ+L + K + ++ +T + + P + L+ P++ PL NT +L+ M ++ T LS I K ++ E L + + L+P+L F++ + + +RS +E + I K K + L A +K S HS + V G+ I + E ISD ++ L ++ +E +++ +LL + + G GD F+ L+++ AS+ ET K EP + SLL ++ + LL E ++ ++ + + + N Q+V F+ + L + +E + T+ +++ L++ +L + +L ++DF L ++P L++ S ++ + + +A D++ IST R + A+S+ ++ Q T N TS++ + L E+L DP +PTR ALR LS ++ + AL+ +EKL +IF NL H+DT++YL+A+ G+ L DV + +LP L ++ K D RMK+ E ++R + G+++ Y++ L++ GV D D RASSL+ +GELC L F +GS++ EV +C+ V TD ++VR+A + VV LL+G+ + + L +Y LK + E D++ LH AL LD+IMK + P
Sbjct: 134 PDALSISQQKTVQFVLQFVVTLGICPYLMPGVGVPLRYR--TEFGAVVQDVVCFDAAPDATRRLYTSCKALLNVAQHTSLGSLIFCHHFGDIAAGLCQLGFCPTKRKLLTPAEEVLTEEERTLSRGALRDMLDQVYQPLAVRELLILQGGPPQSCTDVKTQMRCRAPAWLRRLCGQLLSERLMRPNGVQAVVRGILEGAGAGAAGGSDAEVTAADWKKCDLIAKILASCPQQSLSPENYYRDICPQVLDLFHFQDKLTARQFQRVATTTFITLSRERPHLAAKYLLQPVLAPLHRCLNTAELSESDMVPGTILVTEEELSRCIEDVFKVYVVGNEPLTVLMDSLLPVLGVLFLLYCFTKQSVSHIRSLCQEILLWILGKLERKKAIASLKGFAGLDKAVPSLHSLCQFRVATQGGIMITIKEAISDEDED--EALYQKVSSEQGRVEHLGDLLSHCQECGLAGDFFIFCLKELTH----VASENET------ELKTEPFS-SKSLLELEQHQTLLVEGQERKLLVLQLMAVLCERMSEQIFTNVTQVVDFVAATLQRACASLAHQAESTVESQTLSMSMGLVAVMLGGAVQLKSSDFAVLKQLLPLLEKVSNTYPDPVIQELAVDLRITISTHGAFATEAVSMAAQSTLNRKDLEGKIEEQQQTSHERPTDVAHSHLEQQQSHETAPQTGLQSNAPIIPQGVNEPSTTTSQKSGSVTTEQLQEVLLSAYDPQIPTRAAALRTLSHWIEQREAKALEMQEKLLKIFLENLEHEDTFVYLSAIQGVALLSDVYPEKILPDLLAQYDSSK----DKHTPETRMKVGEVLMRIVRALGDMVSKYREPLIHTFLRGVRDPDGAHRASSLANLGELCQRLDFLLGSVVHEVTACLIAVAKTDGEVQVRRAAIHVVVLLLRGLSQKATEVLSAVLKDLYHLLKHVVCLEPDDVAKLHAQLALEELDDIMKNFLFP 1082 The following BLAST results are available for this feature:
BLAST of TCONS_00055017 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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