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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055018 ID=TCONS_00055018|Name=TCONS_00055018|organism=Clytia hemisphaerica|type=transcript|length=273bp
TACCAGAGATGAGCAGTGAAGGCAAAATCGTCAAACTGGACAACACAACA
AGTGAAATTCAAAGAAACACAGAACCAAACATCACCATACTTCTTTTACC
AGTATCGATTGGTGCTCAAGGAAATCATTTGGTCAACACGAATGTCAAAG
TAGCAAGTCAAAACACTGACCAGACTATGGATCAATAATAGACGTTATGC
TTTTGGAAATGAAGAGGAGAGATTATCCAACAAAACAACGACCGTCCAAT
CCATGGGAAGCtcaacaaaaaag Run BLAST on NCBI transcript from alignment at scaffold_248:378195..379836+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055018 ID=TCONS_00055018|Name=TCONS_00055018|organism=Clytia hemisphaerica|type=transcript|length=1642bp|location=Sequence derived from alignment at scaffold_248:378195..379836+ (Clytia hemisphaerica)
TACCAGAGATGAGCAGTGAAGGCAAAATCGTCAAACTGGACAACACAACA
AGTGAAATTCAAAGAAACACAGAACCAAACATCACCATACTTCTTTTACC
AGTATCGATTGGTGCTCAAGGAAATCATTTGGTCAACACGAATGTCAAAG
TAGCAAGTCAAAACACTGACCAGACTATGGATCAATAATAGTGAGTAAAa
cgtaccttatcggccaaaacttagtcggccctaattttagtcacctcctC
AAAATTTAATCACTAAAGGCCGACTAAtaactaagttttggccatttagt
cggccctaattttagtcaccaagtcaaaatttagtcacttagggccgact
aagttttggccgataggCGATATAACCTTATAACCTTAAGTCGAGTTTTT
TTTCAAGGCgtataaacttttttttcaaacgcGAGCAAAAACTTCaacga
ttttcgcgaattttggcctttttcgcgaaagtaaatgcatttgaaaaggt
gattcgcGAAactttatgctcgcgaaaaattctttgaaaatctaTAAAGC
ttccaaatcaaaatcaaaactagTAACTGTTGCATTTCTGTGCCTTAAAA
GCGTCATTGAATTCATAGAATACCAGTTTTAAGCAAATTCAAGGAGTATG
TCATCACAATCGACTTtaaatacaaataaaatggaacgtTCTAGCAAAAC
GAACGATAGGGAACGTTCTCGAACGTTAAGGAACGTTGTTAGAACGCTAG
AGAACGTTCTTGAACGTTCCTGATCGTTCCCTGTTATTTACTACTAGTGT
CTTAAACGTCCAGGAACATTACAGAACGTTCACTAACGTATTATTGAGTA
ATCTATTAGCTTTTGGACGCTTTTGGATCGTTCATGAGCGTTCTGGAACG
TTCCATAGCGTTCTTGGAACGTTCCAGAACGCTTGAGAACGTTCCATTTC
Atttgtacttcaaatcgcttgtgatgacactaaaatgtcacttttaagcc
attttttaatgaaaatcttcattttgatCATCCAATTCGTGAaggtttat
gctcgcgaaaaatattttttcctcgaATTCGCGAAAgcaaatgtcgtaaa
tttcgcgaaatttcgacctcgcgaaagtttttacgcctaaagtactcGAA
ATAGCATGTCACTTCCATTCTCagctaaaatatattttaatctctTTGAC
TTCAAATTGGGTCACTTTTAACATCGTTGAATGAAACGAGTTTATTTCTT
GTTCAAGACAAGTACTGTAAAACAGAACAACTGATTTTATACGgatgttc
ttcattttttcagttttaagccaaaaaatattaagaacatgttcttattt
tcaccattttctgagtatttttgtccattttctttagAAATCGGGAGTAC
AAAAAGAATATTCgtaacttgctcttaacattttagccatcgaagcctta
tgttcttatatagtttattcttataaaaaacgtgtatccctCGTGGGTCT
ATTTTGACCCCAAATTTAATAAAGTTTTGGATATTGAAGGTCTTTTCACA
TCTGTTTAGGACGTTATGCTTTTGGAAATGAAGAGGAGAGATTATCCAAC
AAAACAACGACCGTCCAATCCATGGGAAGCtcaacaaaaaag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055018-exon-scaffold_248-1491911889:378195..378384 | TCONS_00055018-exon-scaffold_248-1491911889:378195..378384 | Clytia hemisphaerica | exon |
| TCONS_00055018-exon-scaffold_248-1510915933:378195..378384 | TCONS_00055018-exon-scaffold_248-1510915933:378195..378384 | Clytia hemisphaerica | exon |
| TCONS_00055018-exon-scaffold_248-1575043694:378195..378384 | TCONS_00055018-exon-scaffold_248-1575043694:378195..378384 | Clytia hemisphaerica | exon |
| TCONS_00055018-exon-scaffold_248-1491911889:379754..379836 | TCONS_00055018-exon-scaffold_248-1491911889:379754..379836 | Clytia hemisphaerica | exon |
| TCONS_00055018-exon-scaffold_248-1510915933:379754..379836 | TCONS_00055018-exon-scaffold_248-1510915933:379754..379836 | Clytia hemisphaerica | exon |
| TCONS_00055018-exon-scaffold_248-1575043694:379754..379836 | TCONS_00055018-exon-scaffold_248-1575043694:379754..379836 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_248 | supercontig | scaffold_248:378195..379836 + |
Blast
The following BLAST results are available for this feature:
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