TCONS_00055020 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055020
Unique NameTCONS_00055020
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length997

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055020 ID=TCONS_00055020|Name=TCONS_00055020|organism=Clytia hemisphaerica|type=transcript|length=997bp
GTCCAATCAAAATCACTGTATAAGTTGTATAAGCAACAAACCCGTTTCCA
GTCTTCAAATTAAGAGACAAGGAAAATTATTGTGTGAGGGTTGGGAACGA
GATCACAGTTCTATGAtaaaaacaacataaaagatGAAAGAAGCTTTTAc
gagataaaaacaaaaaatcaagcttaATAACGAagattcttaatattttg
gtagTATTTATCGAATTTTGCCCTTTGTTATCTGTAACTGTCAAAGAATC
CAACACTAAATATGCAGAAGGGAATACTACCACTGGAAGCTTTGAGAATT
TGTCATGATAAAAATCCTGGAATGCGAAAATATATGGAAGATGAAATTTC
GATTGTTCATGCCCCCAATGATCAAATACCAACTACTTATCTTGGAGTTT
TTGATGGTCATGGAGGAAAGGAGGCTGCAATATATGCTCGAGacaattta
tttaaaaatctcaaacttcaacctggattttttgATAACGAACCATCAAA
AGTAAAGGAGGCTATTCGAGAAGGCTTCATCAAAACACACATGGATATGT
TTCAAATAGTTGaTACATGGCCGAAAAGAAAAGATGGACACTTATCTACA
AGTGGAACAACAGCGACGGTAGTTATTCTTAGGCAAAACAAAGTTTATGT
TGCTCATGTGGGAGATTCTGCAGCAGTTATTGcccaaaagaaaaacaata
gaTATGTTGCTCAAGAATTAACAGTTGACCATAAGCCGGAAAGCGTGAAA
GAGAAAACAAGGTAAGCATCAATAGAAAATACTAATTGACCTACTTCAAT
CGAacttttttagggaaaaagatttttttccaagGTATCAAACCTTTGTA
GCAtgcaattttttattcaaacaccATGTCATCACACCTTCGGATAACTT
TGCTCAATGAGCAGGGATATAATCCAGTCCAATTTTTGGTGTGGTCCaac
tttttgacctttttttaaatgtaatcCCGATGGTGTCAAATGATGAC
Run BLAST on NCBI

protein sequence of TCONS_00055020-protein

>TCONS_00055020-protein ID=TCONS_00055020-protein|Name=TCONS_00055020-protein|organism=Clytia hemisphaerica|type=polypeptide|length=167bp
MQKGILPLEALRICHDKNPGMRKYMEDEISIVHAPNDQIPTTYLGVFDGH
GGKEAAIYARDNLFKNLKLQPGFFDNEPSKVKEAIREGFIKTHMDMFQIV
DTWPKRKDGHLSTSGTTATVVILRQNKVYVAHVGDSAAVIAQKKNNRYVA
QELTVDHKPESVKEKTR
Run BLAST on NCBI

transcript from alignment at scaffold_248:413011..420277+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055020 ID=TCONS_00055020|Name=TCONS_00055020|organism=Clytia hemisphaerica|type=transcript|length=7267bp|location=Sequence derived from alignment at scaffold_248:413011..420277+ (Clytia hemisphaerica)
GTCCAATCAAAATCACTGTATAAGTTGTATAAGCAACAAACCCGTTTCCA
GTCTTCAAATTAAGAGACAAGGAAAATTATTGTGTGAGGGTTGGGAACGA
GATCACAGTTCTATGAtaaaaacaacataaaagatGAAAGAAGCTTTTAc
gagataaaaacaaaaaatcaagcttaATAACGAagattcttaatattttg
gtagTATTTATCGAATTTTGCCCTTTGTTATCTGTAACTGTCAAAGAATC
CAACACTAAATATGCAGAAGGGAATACTACCACTGGAAGCTTTGAGAATT
TGTCATGATAAAAATCCTGGAATGCGAAAATATATGGAAGATGAAATTTC
GATTGTTCATGCCCCCAATGATCAAATACCAACTACTTATCTTGGAGTTT
TTGATGGTCATGGAGGAAAGGAGGCTGCAATATATGCTCGAGacaattta
tttaaaaatctcaaacttcaacctggattttttgATAACGAACCATCAAA
AGTAAAGGAGGCTATTCGAGAAGGCTTCATCAAAACACACATGGATATGT
TTCAAATAGTTGGTGAGCAAATTTTCTGTTGTGCTAGAGACAAAGtaact
ttaaatttttgagtcCGTATAAGTGTTTTTCCATCATAAAGTGAGGCCCC
CAGCAGCgacacccctaatcacgccatcacgcaaaaaaaatttctctatc
acgcaaggaccctgccgacgcaccggacttaatgAACACCgaacacgcga
aagtccggtgtaaatgagaatttttttaccacgggacaatttctacacca
gagttaaggaagtcggatgtccggtgtcggagaaggatatttttcccacc
ggacaacaATCAAAACATCAGACATGACCAGTctggtgcgtccggtgttt
cttaatcttttgtttcataaatgtccggtgtcctaaattccctgtatgca
acaccagactgacaccagacttattgcgtccggtgtagcgaaaggatact
ttttgccattGGGGACAAATACACTgaacagtccggtgcgtcgacaGGGT
CCTATCACGCATCAtgaaaatttactaaaatttgtcatcacgcaaaaaat
agcgaaaatagcccaaatcacgcatcacgcctcaaatttttgccctatca
cgcatcacgccaaaatcttgatcacgccatcacgccaataaaaatctcta
atcacgtcatcacgcaagaaaaagtcccaatcacgccatcacgcaaaccg
ctggggggcctcataagtCATTGGTTGTAATGTTGTATCAGTCTAAAGAA
TagagacaaatttattttctgatACTCAGAGGTTTGTGCCGTTTCAGGCA
GTTTTCAGTCAGATTTTAATGTTGTAACGTTGTAATTTTAATGTTGTAAT
ATTGTATATGTTCCAAAATTAACCATAGGCCTTACTAGGGGAAGTTGGCC
ATCCTATTATTTGTgtcattttaattttgaatataTATACATAATCTGGC
ATGAGTTGAAGCAAAGTTTTATTCCATAATTCAATTACACAAATTAATAG
TGTTAGGAATAAGCCTTAAGGCAGAATGTTCTGCACCGTTGAGGTTTTGT
GTCACGTATGTAACAACTGAATTAAATATGTAGCTACTCTATTAGTACTG
TGAGATAGCCCTGCCTAAacagaccttttcgcctttccatccgccatctt
gaattgtatgcaaaaatagaggagaGAAAAAactgtggttggatttagtt
ggaaaatatgcaaaacataagcaagtttacacaaagcttaaaaagacaaa
aaagcatcttataaagaaataatattataatcattaaaacaattaaagat
ggaattttttaatccaaaaagacAGCCCTGTGAATGCAGACAAAATCATA
TCGGCATGTAAGTGCCTACCAAAACGGCCGTAGGCCGGCAAAATTTTGTC
GACTTAGAGGTCATTTTAGGTCTGCAAAGACAATAATTAACGAACTAACA
AATTCAGCTGCTCTATAATTGTGTTaataagttttatgttttataaagag
aatggaacGAGGCTTGATTATcatgtgttatcaaatgataacacaattag
attaacctgacaaataatatttttcctctttaggtcggctttgccgaccc
aaaacatttcttttgtcggCATGCAGACCTAGAGTGTAAACTAGTCGGCA
AATAAAAGCCGACTTCAGCTCAAGTTATGTCGGCTTTCAGGTCGGCattg
ccgaatgccgacctggattcacagggctgaaagaaatatttacagaacaa
caaaagccttttagaaattttttcttaaagacattgcatattctgttttc
atgccattattaaaaaattccaccaagacagagtacacacatcaaacttt
caaaacacgcaaactgaaagcagtatataattatgacgtcacacattcag
cgggttcggatcaatgttttgatttgattgtctgacggttctattcccag
gagaataatttaccgtcagcagAATAAGGAATATTTCTGTCCTTcgctgg
tgatttttcagcttgagaatatgtctaatgttatggttttttgaagtgct
tgttctaagagatgagcgaatttgattatttcaatgccaattatgcatgt
aagttttacattaatactttctttttgcatatgttttgcatactttctaa
ggtaatttcaccacggcaattcggccaccatNNNNNNNNNNNNNNNNNNN
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ttagacgagggatgtcgatattagaccaacttacggtatgtaATGTCTTT
ATGAACaaacttttgttgttctgtaaatatttctttttggattaagaaat
tccatcatttattgttctaatgattataatatttctttataagatgattt
gttgtctttttaatctttgtgtaaacttgcatatgttttgcatattttcc
aactaaatccaaccacggcttttttgttcctttatttttgcatacaattc
aagatggcggatggaaaggcgaaaaggtctattacattTGATTTTGTTCG
ATTAGGATTATGTTCAATGAGTTTGATNAGTTTtacattaatactttctt
tttgcatatgttttgcatactttctaaggtaatttcaccacggcaattcg
gccaccataatttttgcatataattcaatatgacggatacaaacattccc
tctccaagttgaacaataaactattgcaagtcTCGGAACAAAACATCCAG
Acaatgtcaatcgaacaactttgaacaaaaatcgcaatcgaacgtaatcg
gaTGCagtcgaataattgcgattcaaTTGTCCAAtgtaattgaatctcaa
tcgaacgaccgattcctgggtaatattccaTTGtgttgtgttcaattgcg
ttcgagtaaggttagattggttcaattaatagttgactatgttgaCCAtt
tgttcgattgattgtcNtagtcattttttcttttgatcatgaaagtatag
tccttgaagagtcagaaaacgtgtgtggcgttatttggatcaggcacaaa
tttccataaaacataaattttaaacatagacatattatataccaatcgat
cacaaattttatgctgattaagaaaaatgtcagaaccatggtctgtaaat
ttcgttatctggagatatgaagcactttctatttcgattttttgaaatga
ctacttttggttccaaattTGCGTANtttcgcctttccatccgccatatt
gaattgtatgcaaaaattatggtggccgaattgccgtggtgaaattccct
tagaaagtatgcaaaacaaatgcaaaaagaaagtattaatataaaactta
catgcataattggtattatattaaagtgtaatcttgtagagtAAAGATTA
ACNctaccgttcaaataataaaattcaggaaaagtttttttctacatgaa
tttcgaaatccataatggcggattcaaaattttctttcgtcacatcggct
cttaggctctgcttccctaagaaaaatatttttgagctttaaaccctgca
tattatataccataccaatcgatcagaaattttatgctgattaagaaaaa
ggtcagaactatGGTCtgaaaacttagaaaacgtaaatacttcgtatctc
ttgataacgaaattttcaaaattctttttcagaTACATGGCCGAAAAGAA
AAGATGGACACTTATCTACAAGTGGAACAACAGCGACGGTAGTTATTCTT
AGGCAAAACAAAGTTTATGTTGCTCATGTGGGAGATTCTGCAGCAGTTAT
TGcccaaaagaaaaacaatagaTATGTTGCTCAAGAATTAACAGTTGACC
ATAAGCCGGAAAGCGTGAAAGAGAAAACAAGGTAAGCATCAATAGAAAAT
ACTAATTGACCTACTTCAATCGAacttttttagggaaaaagatttttttc
caagGTATCAAACCTTTGTAGCAtgcaattttttattcaaacaccATGTC
ATCACACCTTCGGATAACTTTGCTCAATGAGCAGGGATATAATCCAGTCC
AATTTTTGGTGTGGTCCaactttttgacctttttttaaatgtaatcCCGA
TGGTGTCAAATGATGAC

Coding sequence (CDS) from alignment at scaffold_248:413011..420277+

>TCONS_00055020 ID=TCONS_00055020|Name=TCONS_00055020|organism=Clytia hemisphaerica|type=CDS|length=1008bp|location=Sequence derived from alignment at scaffold_248:413011..420277+ (Clytia hemisphaerica)
ATGCAGAAGGGAATACTACCACTGGAAGCTTTGAGAATTTGTCATGATAA
AAATCCTGGAATGCGAAAATATATGGAAGATGAAATTTCGATTGTTCATG
CCCCCAATGATCAAATACCAACTACTTATCTTGGAGTTTTTGATGGTCAT
GGAGGAAAGGAGGCTGCAATATATGCTCGAGacaatttatttaaaaatct
caaacttcaacctggattttttgATAACGAACCATCAAAAGTAAAGGAGG
CTATTCGAGAAGGCTTCATCAAAACACACATGGATATGTTTCAAATAGTT
GaTACATGGCCGAAAAGAAAAGATGGACACTTATCTACAAGTGGAACAAC
AGCGACGGTAGTTATTCTTAGGCAAAACAAAGTTTATGTTGCTCATGTGG
GAGATTCTGCAGCAGTTATTGcccaaaagaaaaacaatagaTATGTTGCT
CAAGAATTAACAGTTGACCATAAGCCGGAAAGCGTGAAAGAGAAAACAAG
GTAAATGCAGAAGGGAATACTACCACTGGAAGCTTTGAGAATTTGTCATG
ATAAAAATCCTGGAATGCGAAAATATATGGAAGATGAAATTTCGATTGTT
CATGCCCCCAATGATCAAATACCAACTACTTATCTTGGAGTTTTTGATGG
TCATGGAGGAAAGGAGGCTGCAATATATGCTCGAGacaatttatttaaaa
atctcaaacttcaacctggattttttgATAACGAACCATCAAAAGTAAAG
GAGGCTATTCGAGAAGGCTTCATCAAAACACACATGGATATGTTTCAAAT
AGTTGaTACATGGCCGAAAAGAAAAGATGGACACTTATCTACAAGTGGAA
CAACAGCGACGGTAGTTATTCTTAGGCAAAACAAAGTTTATGTTGCTCAT
GTGGGAGATTCTGCAGCAGTTATTGcccaaaagaaaaacaatagaTATGT
TGCTCAAGAATTAACAGTTGACCATAAGCCGGAAAGCGTGAAAGAGAAAA
CAAGGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034661XLOC_034661Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055020-proteinTCONS_00055020-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055020-exon-scaffold_248-1491911889:413011..413572TCONS_00055020-exon-scaffold_248-1491911889:413011..413572Clytia hemisphaericaexon
TCONS_00055020-exon-scaffold_248-1510915933:413011..413572TCONS_00055020-exon-scaffold_248-1510915933:413011..413572Clytia hemisphaericaexon
TCONS_00055020-exon-scaffold_248-1575043694:413011..413572TCONS_00055020-exon-scaffold_248-1575043694:413011..413572Clytia hemisphaericaexon
TCONS_00055020-exon-scaffold_248-1491911889:419843..420277TCONS_00055020-exon-scaffold_248-1491911889:419843..420277Clytia hemisphaericaexon
TCONS_00055020-exon-scaffold_248-1510915933:419843..420277TCONS_00055020-exon-scaffold_248-1510915933:419843..420277Clytia hemisphaericaexon
TCONS_00055020-exon-scaffold_248-1575043694:419843..420277TCONS_00055020-exon-scaffold_248-1575043694:419843..420277Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_248supercontigscaffold_248:413011..420277 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.3327	2.27608	1.08758	0.718798	59.7701	47.6759	42.6602	47.1752	20.2728	26.6628	15.6677	14.8853	19.3308	14.5241	9.31302	14.7695	17.6401	19.7766	11.1942	15.6042	14.9199	13.3352	10.4525	12.6142	53.0351	37.0196	17.6047	12.9575	13.4	14.752
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001932PPM-type_phosphatase_dom
IPR000222PP2C_BS
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0043169cation binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003824 catalytic activity
molecular_function GO:0043169 cation binding
Blast
[Close]
BLAST of TCONS_00055020 vs. Swiss-Prot (Human)
Match: PPM1D (Protein phosphatase 1D OS=Homo sapiens GN=PPM1D PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 7.644e-32
Identity = 64/128 (50.00%), Postives = 87/128 (67.97%), Query Frame = 1 
Query:  388 YLGVFDGHGGKEAAIYARDNLFKNLKLQPGFFDNEPSKVKEAIREGFIKTHMDMFQIVDTWPKRKDGHLSTSGTTATVVILRQNKVYVAHVGDSAAVIA---QKKNNRYVAQELTVDHKPESVKEKTR 762
            +  V DGHGG+EAA +AR++L+  +K Q GF  +EP+KV  AIR+GF+  H+ M++ +  WPK   G  STSGTTA+VVI+R  K+YVAHVGDS  V+      K++   A E+T DHKPE  KE+ R
Sbjct:  100 FFAVCDGHGGREAAQFAREHLWGFIKKQKGFTSSEPAKVCAAIRKGFLACHLAMWKKLAEWPKTMTGLPSTSGTTASVVIIRGMKMYVAHVGDSGVVLGIQDDPKDDFVRAVEVTQDHKPELPKERER 227
The following BLAST results are available for this feature:
BLAST of TCONS_00055020 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PPM1D7.644e-3250.00Protein phosphatase 1D OS=Homo sapiens GN=PPM1D PE... [more]
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