TCONS_00055022 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055022
Unique NameTCONS_00055022
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length575

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055022 ID=TCONS_00055022|Name=TCONS_00055022|organism=Clytia hemisphaerica|type=transcript|length=575bp
CAGATATAAAAGGACCTTAAactaaaaaaagtaaacaaaaatccCATCAT
TTTAAAATATCTCAACAATCATGGACAAAGCAGCCAAACTTCAGATGCAG
ATACGAGAGAACAGCAGTGAGTTGACACATTTTCTTCAAGATTTGACGAA
ATGGGAAGAAAATATGAAGAAAGAAGATGAATATTTAAGAACAACAAGAC
GGATTGATGAGAAGCTTCCACCAGTAAGAAAGGGAAAGAAATCCACCGAT
GCAGAATCCATTGGCAAATCAACCGACACCGAAGGAgatcaaaacaacaa
taaaaacaagaaatcatcacaagtgaaaaaagagaaaatcaaatCCTATG
ATTATGATGCATGGTCCAAATTCGATGTCGAAGCAGCGTGCGCAGATGTG
Gatggagaaaacgaaagtgaaagtgattttgaaaaggaagaagaagatga
agaagaaatggagagaattgaagaacaaagaaaattacAACAAGCTGCCA
TGGAGAAAGATAAGGTCAGTGTAGTAAAcaaacatctttttaaaaaaata
tctaaagttaactttagaacgccat
Run BLAST on NCBI

transcript from alignment at scaffold_248:53546..59829-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055022 ID=TCONS_00055022|Name=TCONS_00055022|organism=Clytia hemisphaerica|type=transcript|length=6284bp|location=Sequence derived from alignment at scaffold_248:53546..59829- (Clytia hemisphaerica)
CAGATATAAAAGGACCTTAAACTAAAAAAAGTAAACAAAAATCCCATCAT
TTTAAAATATCTCAACAATCATGGACAAAGCAGCCAAACTTCAGATGCAG
ATACGAGAGAACAGCAGTGAGTTGACACATTTTCTTCAAGATTTGACGAA
ATGGGAAGAAAATATGAAGAAAGAAGATGAATATTTAAGAACAACAAGAC
GGATTGATGAGAAGGTGAGTAAAGATGATCAAATACCGTAAGTTGGTCTA
ATGTCGACATCTCTCTTCTAATTTCGACACCCTTCTTTAAGGATGAAATA
ATAGGAAGGTCGGAATCGCTGATGGAAACTATTTTTCTTTACTTGGCGAT
CAGAGTGAAAAAAAAACCTTTGTCTATTAGTGATCCCGACCTTCCTAATA
TTCTCTAAAGTAGGGTGTCAAAATTAGAAGAGGGATGTCGAAATTAGACA
AACTTACGGTACAAATTCACAATCTCTCTGGGATTTACCAGAAAAATGTT
TTGATCAACTACTCCCATAGTCCAAGTGGGAACCCACTCCACTGGAAAAT
TAGGTTTCCCCTTTTGGGAAAGNCATAGACCAAGTGGGAACCCACTCCAC
TGGAAAATTAGGCTTCCCCTTTTGGGAAAGATACCATTTCAAAGATACAA
TTTCAGCCCCGCTGGGGGAATCGACATTTGAGATTCAAGGGAAAAGTTAC
ACTCCAAAACCACAGTACCCCAAAACCACTGGATTTTGCGTCTCCATTGG
TATTTCGATAGAGGTTTTCATCTCCTATGGGAAAAAGTTTTAACAGGGCA
TGCACTGAGACAGGGGTGTGAAACAGTTGAGGGTTGAGGATAATTCAAGA
TATCGAATCCACCTGGATATTCAGTTCATCTTGTTCGAGGGCCCTATCTT
TAAAAGCTATTTTTTTTTACTTCACAGCTTCCACCAGTAAGAAAGGGAAA
GAAATCCACCGATGCAGAATCCATTGGCAAATCAACCGACACCGAAGGAG
ATCAAAACAACAATAAAAACAAGAAATCATCACAAGTGAAAAAAGAGAAA
ATCAAATCCTATGATTATGATGCATGGTCCAAATTCGATGTCGTAAGATT
ATTTCCATTTTAATTATAACTCAATTTAAAGGGGTAAATTTTCCCTGTAA
ATGTGCAATGATCTTGGTCAATCCCACACTAAATTCACGGTTTTTCTAAA
TTCAACCGTTTCATAAATTTTCCCAAATTTACCAGTACGAAAAGACGACA
GTCCTACGTTCTGCTTCGGTAATAAGCAGCGGTGGAGCCTGGTAGAGTCA
AAGACAAGCTTCATCTAAGAGGAAGAAACCCGATGGCAATATTATTTTTA
TTTGTAAGGTACCTTATCGGGGAAAAAATGTTGGGGTTTCGACCGATGTT
TCAAATCTAACAAATTATATGCCGTTGGAAAGATAATTGAAAGCAATAAT
ACTGAGAAAAATACTTGAGAGCAATATAATTCTGAGAAAAAGAAAATCAG
AAACTTTAGAAATGAAGACGAAGAATGAAGAAGAAAAAAATGAAGCTTTT
TATCATTTAGTGCTAGAAGCTTAAATCTTTGGTATAGAGGTACTTTGAAG
CCTCCCCATTTCAGATATATTGTGTTTTTCATAGAATTATTGCATCGAAA
GTTATAAGCCTCTGAAGGTTGCCCGTTGGAGTTAAAGAACAGCGCAAAAA
ATGACAACAATAGTAGGAAATGTACGATGAAATTATGACAGTGACTTCAT
TATTAGCATATCGTGAAAAGATGACGAAAATTTATATTCAAATGCCTAGC
ATTCTCTAAAATAAAAATGAGATAGGAGAAATTATAAAAGTAAATTATAA
ATGCAACTTTGATTTTTACCGCTATTATCTTTCTTTCGAAATATTACTAA
AAAGTCTATGCCAAATTAAGCTTCCTATCGCAAATAACGTTGCCTTCCCT
TTCATTAACAACTTCAGTGAAATTTGTAAAAGCATCTTCGGTGAACATTT
TGTTTTCAGTGGTTAGACAATAGTGATTTAATTGACTCGGGTACTCCTCC
AAACACAATTCTCTTCAAACTTCAAAACTTTTTTCCCGTATGATTGAAAG
TAGACATTTTGCTTTCCTCTTTGCACTTTTTTCGTTTCCATTATAAAAGC
AAACCAATCGCATTACTGATGAGTAGGTCAGTATTATCGGTCGATTTTCA
ATGTTATCCACTAAGTCATTGATTTATGATCAAAAATTCATTTCGATTTT
TCTTTTCTTCTTAGAAGTACCAAGACAAGATAATTTTTAAATTCTCTATT
CTGGTGCCTCTCCATATTCATATCGAAACTTCATTAAACTTGTAAAGCAA
AAAAACACAAACCGATGTGCGTAGAGAAACCCATTCGGAGTAAACAAAGT
ATTTCCGGAGAAATTTTAGCACAAACTCGAATGAAGCTCATTTTGAATTA
AAAAATTTAAACCAAACTGAAACATTTTTATAAGATGAGTTTACAATACT
TTACCCCTCTTTTTGGACCTACCTTAAGGTAGTGTCCTATAAATTAACCC
GTGTTCGTTAGTTAGTTCGTTAGTACGTTAGTTACCAACTTTTCTCGAGA
TTGGCTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNTGCTTAGATAGTTGGGAAATACTTTTACACCATTTTTGATGTT
GTAGCTGCTTCTAGAAACAGATTATCATCAAAATACTTCAAAATTGTATG
TATTGGATTGTTTTAGCCGAAAATCGTGATTTTTGGCAAAAGTGACTGAT
ATTTGGGCGGCTGGTGTGACACATACAGATTTTTCTGGATGCTGATTTTT
GGTAAATTACTTCAAAATGATGTATAGATTGATAAATAGCCAAAGACAGA
TTTTTTAATTAACTTCCCCCCACTTTTATTTGCTCTAGAAGTGAAAAATG
CAGAAAAAGTGACATTACCGCAAAACGTGAAAAAAAACTGTGGTTTACGT
GATGCTACCATTTTTGTTGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNTTTTTTTCTAAAGATTCCTAGTTCTTGAGTTA
TGATAAAATAACTGAACATGTCTATTTTCTGAAAAAATGTTGCGCGCTGA
CAGCGTGAAAATTCAAAAAGTTGCGCGCTGGAAAGGTTAAAAACTACGAA
AAAAGCGATTTGATAAAAGTGATCTTAGAAACACTCTAAAAGTTACGAAG
AAAGCGATTTGATAAAAGTGAAATCAGANGAGTAGTGTGACTCACCCTCT
GTAGTGTAACTCATCCTCTGTAGTGTGACTCACCCTCTGTAGTGTAACTC
ACCCTCTGTAGTGTAACTCTCCCTCTGTAGTGTGACTCACCCTCTGTAGT
GTAACTCGCCCTCTGTAGTGTAAATCACCCTCTGTAGTGTAACTCACCTC
TGTAGTGTAACTCACCCTCTGTAGTGTAACTCTCCCTCTGTAGTGTAACT
CACCCTCTGTAGTGTAACTCACCCTCTGTAGTGTAACTCACCCTCTGTAG
TGTGACTCACCCTCTGTAATGTAACTCACCCTATGTAGTGTAACTCACCC
TCTGTAGTGTAACTCTCCCTCTGTAGTGTAACTCACCCTCTGTAGTGTAA
CTCACCCTCTGTAGTGTAACTCANGCACTCTAAAAGTTACGAGAAAAGCG
ATTTGATAAAAGTGATCTTAGAAACACTCTAAAAAGTTACGAAAAAAGCG
ATTCCATAAAAGCGATCTTAGAAACACTCTCAACAAAAGTTAAGAAGAAG
GCGATTCAATAAAAGTAATCTTAGAAACACTCTAAAAAGTTACGAAGAGA
CAATTAAAAAAAGAATTTAGAATAGATTTTAAGAGGCAGGAAAGAAGATT
TGCTCTCAAATCAAGTTAATGGTTTTATTCATCTTTTCATTCGGACATCA
TGACCGACACAAAAGGTTTTCAGTCAGTCAAACTTATTTGCAGCCCTGCA
ATTCAGATAAAAGTTGAATGCATAAAAAAAAAAAAATATTGATCCAGCTG
ATTATGCATTTCTTGTGAAGTACACATAATTAATTTAAGATTTCGGCATT
AAGATCATTTTATATTTTAGCTTTTTTATATTTACATATATACATTTATT
TATTTATATTAGATTTTAAATAAACAAACTTTTATACATAACTATTAAAC
TTATATTTTAATATATTTATTGCTGACAGCACATTTTTTCATTTTTGTAA
TTTTTACGTAGAATTTGCGAGATTAGGCTTAATTGTCTTATGCAAATACA
TAACTAGAACTAGAACTTACAAGGGGTTCTTATAATTTTCAAAGTTCAAC
TAACTGGTCAAACGTATTTCAAATTCCCATAGACTTCTATTAGGTACTTA
TCATACACAAAGTAACCCCAAAGATACACTTGACAAGAGTAGTTGAGACT
AGCCAGAGTTGAAATAACGTGCTTAAAATCAATAAGTCAGCGAGCTGTGT
CAGTTCCATGGTTCATCATTTTAAGACTTTCCATATGCAAGTACAGCAAA
AACTATAGTTTGTTTATATGAATTAAGTCTCAGACTGCTTTCATATTTAT
AATGGTGAAATCTAACATNACCCTCTGTAATGTAACTCACCCTCTGTAGT
GTAACTCTCCCTCTGTAGTGTAACTCGCCCTCTGTAGTGTAACTCACCCT
CTGTAGTGTAACTCACCCTCTGTAGTGTAANATTCCATATCATTTTAAGA
CTTTCCATATGCAAGTACAGCAAAAACTATGGTTTGTTTATATGAATTAA
GTCTCAGACTGCTTTCATATTGATAATGGTGAAATCTAACATGGCGCCAA
AAGAAACATGAAAAGGGGAAAGAGTCCCATCCCAAATTTCAAGACAATCC
TGACAAATTATGACTTTTTAACTTACGTATATTGAAGAAATTATTCTCAA
GCGATTATAAATCTTCAATAATGATATAAAGACACTGTAAAATTGCAGTA
CAGTAGATAACAGGCTTTGTTAGGGTTTACAAGCAAGTCACTGACTGGTG
ATATGATCTGATTTCAAACATATAAATTGAGAATGAAAATGAGTTGAGCC
TGGGAAAAATTTCTATAGGTGAAGAATGAAAATGAAACAAAGAACACACC
TGGTGTAAATAATTAGACATTACAGTCTGACAATAAAAGTATTCCTCACA
ATATGCTTCAGAAAGCTAAGCCAAATCGACAAAAACTTTTCTTCTCTCCC
TTCAGCGTGCAACAAAAGCCAAAGTCAAAGCCGAAANGCTGTAGTGTAAC
TCACCCTCTGTAGTGTAACTCTCCCTCTGTAGTGTAACTCACCCTCTGTA
GTGTAACTCTCCCTCTGTAGTGTGACTCATCCTCTGTAGTGTAACTCACC
CTCTGTAGTGTAACTCACCCTCTGTAGTGTAACTCACCCTCTGTAGTGTA
ACTCACCCTCTGTAGTGTAACTCTCCCTCTGTAGTGTAACTCACCCGCTG
TAGTGTAACTCACCCTCTGTAGTGTTACTCACCCTCTGTAGTGTAACTCG
CCCTCTGTAGTGCAACTCTCCCTCTGTAGTGTTGGGTCTCAAAAATGTAC
CAGAACTCTCATCATCTTACTGCGTTCTGCGTTCTCAGGAAGCAGCGTGC
GCAGATGTGGATGGAGAAAACGAAAGTGAAAGTGATTTTGAAAAGGAAGA
AGAAGATGAAGAAGAAATGGAGAGAATTGAAGAACAAAGAAAATTACAAC
AAGCTGCCATGGAGAAAGATAAGGTCAGTGTAGTAAACAAACATCTTTTT
AAAAAAATATCTAAAGTTAACTTTAGAACGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034663XLOC_034663Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055022-exon-scaffold_248-1575043694:59616..59829TCONS_00055022-exon-scaffold_248-1575043694:59616..59829Clytia hemisphaericaexon
TCONS_00055022-exon-scaffold_248-1575043694:58738..58902TCONS_00055022-exon-scaffold_248-1575043694:58738..58902Clytia hemisphaericaexon
TCONS_00055022-exon-scaffold_248-1575043694:53546..53741TCONS_00055022-exon-scaffold_248-1575043694:53546..53741Clytia hemisphaericaexon
TCONS_00055022-exon-scaffold_248-1510915933:59616..59829TCONS_00055022-exon-scaffold_248-1510915933:59616..59829Clytia hemisphaericaexon
TCONS_00055022-exon-scaffold_248-1510915933:58738..58902TCONS_00055022-exon-scaffold_248-1510915933:58738..58902Clytia hemisphaericaexon
TCONS_00055022-exon-scaffold_248-1510915933:53546..53741TCONS_00055022-exon-scaffold_248-1510915933:53546..53741Clytia hemisphaericaexon
TCONS_00055022-exon-scaffold_248-1491911889:59616..59829TCONS_00055022-exon-scaffold_248-1491911889:59616..59829Clytia hemisphaericaexon
TCONS_00055022-exon-scaffold_248-1491911889:58738..58902TCONS_00055022-exon-scaffold_248-1491911889:58738..58902Clytia hemisphaericaexon
TCONS_00055022-exon-scaffold_248-1491911889:53546..53741TCONS_00055022-exon-scaffold_248-1491911889:53546..53741Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_248supercontigscaffold_248:53546..59829 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
11.7752	12.8545	7.99272	3.25424	1.29969	0	0	0	2.6109	1.08509	6.28527	4.80913	5.14515	7.51811	11.6578	9.84642	4.54158	9.02712	8.15134	4.94201	7.40505	6.74589	14.8393	12.6287	0.547049	0	6.9105	6.4773	9.92311	10.0725
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055022 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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