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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055025 ID=TCONS_00055025|Name=TCONS_00055025|organism=Clytia hemisphaerica|type=transcript|length=1577bpRun BLAST on NCBI protein sequence of TCONS_00055025-protein >TCONS_00055025-protein ID=TCONS_00055025-protein|Name=TCONS_00055025-protein|organism=Clytia hemisphaerica|type=polypeptide|length=483bp MDKAAKLQMQIRENSSELTDFLQDLTKWEENVKKEDEYLRTSKRIDEKLPRun BLAST on NCBI transcript from alignment at scaffold_248:73364..95869- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00055025 ID=TCONS_00055025|Name=TCONS_00055025|organism=Clytia hemisphaerica|type=transcript|length=22506bp|location=Sequence derived from alignment at scaffold_248:73364..95869- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_248:73364..95869- >TCONS_00055025 ID=TCONS_00055025|Name=TCONS_00055025|organism=Clytia hemisphaerica|type=CDS|length=15972bp|location=Sequence derived from alignment at scaffold_248:73364..95869- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00055025 vs. Swiss-Prot (Human)
Match: RPAP3 (RNA polymerase II-associated protein 3 OS=Homo sapiens GN=RPAP3 PE=1 SV=2) HSP 1 Score: 140.198 bits (352), Expect = 2.020e-35 Identity = 96/266 (36.09%), Postives = 160/266 (60.15%), Query Frame = 2
Query: 68 TIMDKAAKLQMQIRENSSELTDFLQDLTKWEENVKKEDEYLRTSKRI-DEKLPPVRKGKKSTDAESIGKSTDTEGDQNNNKNKKSPQVKKEKIKSYDYDAWSKFDVEAACADVDXXXXXXXXXXXXXXXXXXXXXXXXQRKLQQAAMEKDKGNQFFKEGKYEAAINRYTTAINIDPNNQIFYANRGMALLKMERFGAAEQDCTFALQLDPKYXXXXXXXXXXXXXXXXWKMALEDFNNVLEEEPSNKQAVTEIKNIEKMMKTEQDS 862
T +KA +LQ+Q+++N+ EL DF++DL WE+++K++D LR + +E LPP+R G + K + + + N KN+ IKSYDY+AW+K DV+ ++DK+ + +E E EE+ ++ Q+ L + K+KGN++FK+GKY+ AI+ YT ++ DP N + NR A ++++F AE DC A+ L+ YTKA RR AR L+K + A +D+ VLE EP+N +A E++ I + + ++++S
Sbjct: 2 TSANKAIELQLQVKQNAEELQDFMRDLENWEKDIKQKDMELRRQNGVPEENLPPIRNGNFRKKKKGKAKESSKKTREENTKNR---------IKSYDYEAWAKLDVDRILDELDKDDSTHESLSQESESEEDGIHVDSQKAL----VLKEKGNKYFKQGKYDEAIDCYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAVALNRSYTKAYSRRGAARFALQKLEEAKKDYERVLELEPNNFEATNELRKISQALASKENS 254 HSP 2 Score: 101.293 bits (251), Expect = 1.723e-22 Identity = 78/186 (41.94%), Postives = 102/186 (54.84%), Query Frame = 2
Query: 479 QRKLQQAAMEKDKGNQFFKEGKYEAAINRYTTAINIDPNNQIFYANRGMALLKMERFGAAEQDCTFALQLDPKYXXXXXXXXXXXXXXXXWKMALEDFNNVLEEEPSNKQAVTEIKNIEK-MMKTEQDSXXXXXXXXXXXXXXXXXXXXXXXXXXPLKRIYIQEVGGSEDESEQPQKTNEKSPVHN 1033
Q+ QQA EKD+GN FFKEGKYE AI YT I D N + ANR MA LK++++ AE+DCT A+ LD Y+KA RR TAR L K A +DF VL EP NKQAVTE+ I+K +++ ++ STKPLK++ I+E G + P T +P +N
Sbjct: 276 QQNKQQAISEKDRGNGFFKEGKYERAIECYTRGIAADGANALLPANRAMAYLKIQKYEEAEKDCTQAILLDGSYSKAFARRGTARTFLGKLNEAKQDFETVLLLEPGNKQAVTELSKIKKELIEKGHWDDVFLDSTQRQNVVKPIDNPPHPGSTKPLKKVIIEETGNLIQTIDVPDSTTAAAPENN 461 The following BLAST results are available for this feature:
BLAST of TCONS_00055025 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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