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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055032 ID=TCONS_00055032|Name=TCONS_00055032|organism=Clytia hemisphaerica|type=transcript|length=4191bpRun BLAST on NCBI transcript from alignment at scaffold_248:132812..159471- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00055032 ID=TCONS_00055032|Name=TCONS_00055032|organism=Clytia hemisphaerica|type=transcript|length=26660bp|location=Sequence derived from alignment at scaffold_248:132812..159471- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00055032 vs. Swiss-Prot (Human)
Match: CASR (Extracellular calcium-sensing receptor OS=Homo sapiens GN=CASR PE=1 SV=3) HSP 1 Score: 159.844 bits (403), Expect = 2.292e-39 Identity = 136/548 (24.82%), Postives = 243/548 (44.34%), Query Frame = 2
Query: 395 VVLAFSYNACAQCPGQADYDKTESNSDRLTTILEGNFTIQALITMTEERSNKK-----CHYVNREGVVRAFAMNYAIQKFNSNPKYAEYAKIGLQIDDVCQQLPTTMARGIEVISFHRKNSVCRADFLKCDAKPLNSAVKIQRASALIGTAMSFTTIPLASLMSLYSIPQVSPASSSRLLSKRDLYKSFFRTIPSDKNQIKAMLKVFKRFDWNYIFAVGSDDDYGKLGVSDLKQEAGPLEICITKDEYIPYQSDKTGEKVDSXXXXXXXXXXXXXXXLFLYVQGLGDLILQKAAAMKPPLERIWLTSESWNPSAAIHFSSNISRYYNQAVGILSISIKKYPMTELVDYMT-----EQVIENWECNFW---FRKYIQQNKPFECNIDSI---------SLDKNTFICKPDTNGKVKNISVAAVLTDIKKLPGNIDRLIDATTALGHAIHKVV-----RTQCNNSPCYIDTENLETASITKQMFKTNFTNEQGEIISFTKDGNPLNAYYTIENLIFNNETGAFEYVPVGHWALYNNSRTELKLNESAIVW 1957
V+LA +++ A P Q K + IL G F I + ++ + C N G AM +AI++ NS+P +G +I D C + + + ++ ++ +S+ +F C I A++G S + +A+L+ L+ IPQVS ASSSRLLS ++ +KSF RTIP+D++Q AM + + F WN++ + +DDDYG+ G+ ++EA +ICI E I SD+ + + + + + V+ ++ G L K + +IWL SE+W S+ I + +Y++ G + ++K + +++ + V + FW F ++Q+ +D+ ++ +P G SV D L + + + A ++ HA+ + R N C D + +E + K + NFTN GE ++F + G+ L Y+I N + E G+ + VG++ +Y L +NE I+W
Sbjct: 9 VLLALTWHTSAYGPDQRAQKKGD-------IILGGLFPIHFGVAAKDQDLKSRPESVECIRYNFRGFRWLQAMIFAIEEINSSPALLPNLTLGYRIFDTCNTVSKALEATLSFVAQNKIDSLNLDEFCNCSEH-------IPSTIAVVGATGSGVSTAVANLLGLFYIPQVSYASSSRLLSNKNQFKSFLRTIPNDEHQATAMADIIEYFRWNWVGTIAADDDYGRPGIEKFREEAEERDICIDFSELISQYSDE-----EEIQHVVEVIQNSTAKVIVVFSSGPDLEPLIKEIVRRNITGKIWLASEAWASSSLI----AMPQYFHVVGGTIGFALKAGQIPGFREFLKKVHPRKSVHNGFAKEFWEETFNCHLQEGAKGPLPVDTFLRGHEESGDRFSNSSTAFRPLCTGDENISSVETPYIDYTHLRISYNVYL-AVYSIAHALQDIYTCLPGRGLFTNGSC-ADIKKVEAWQVLKHLRHLNFTNNMGEQVTFDECGD-LVGNYSIINWHLSPEDGSIVFKEVGYYNVYAKKGERLFINEEKILW 530 The following BLAST results are available for this feature:
BLAST of TCONS_00055032 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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