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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055033 ID=TCONS_00055033|Name=TCONS_00055033|organism=Clytia hemisphaerica|type=transcript|length=5311bpRun BLAST on NCBI protein sequence of TCONS_00055033-protein >TCONS_00055033-protein ID=TCONS_00055033-protein|Name=TCONS_00055033-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1197bp MAVIRNRRRNSKTGRTRLSRCGLCDPCLKTEDCGKCRQCKNRLSGKQACKRun BLAST on NCBI transcript from alignment at scaffold_248:159533..171407- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00055033 ID=TCONS_00055033|Name=TCONS_00055033|organism=Clytia hemisphaerica|type=transcript|length=11875bp|location=Sequence derived from alignment at scaffold_248:159533..171407- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_248:159533..171407- >TCONS_00055033 ID=TCONS_00055033|Name=TCONS_00055033|organism=Clytia hemisphaerica|type=CDS|length=32346bp|location=Sequence derived from alignment at scaffold_248:159533..171407- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00055033 vs. Swiss-Prot (Human)
Match: TET3 (Methylcytosine dioxygenase TET3 OS=Homo sapiens GN=TET3 PE=1 SV=3) HSP 1 Score: 306.99 bits (785), Expect = 2.725e-84 Identity = 152/337 (45.10%), Postives = 213/337 (63.20%), Query Frame = 1
Query: 577 SGIEVSPLKRKNQSESS---TPVKVTKAKKGTRKLQRIEQQSCGCSIDI-DQQKTPFYTHLGSAPTIEVLHDNLSQRYSVAKEAIKIHLVSPTQVEGKNGDGCPLARWVVRRSGPDEKYLVVVKQNEDHTCQHIVTVVVIVAWEGITENYADQMYEYLTTNLNEAGFSTRRRCGTNDSKTCMCQGANEESNGASFTFGCSWSMYFDGCKFSKSTSARKFKM--QNSVKEKYMESVLQTMATNVSPLLRVLAPEAFNNMTQYESVASDCRIGNNTDGRPFSGVTCCLDFCAHSHKDQHNMNDGTTMVCTLLKPEEQR------NDEQLHVLPLYQLCD 1551
SG SPLK + S TP K +A E +C C I ++ + P+YTHLGS PT+ + + + +RY +AI+I V T EGK+ GCP+A+WV+RR +EK L +V+ H CQ+ V V++I+AWEGI + D +Y+ LT L + G T RRCG ND +TC CQG + + GASF+FGCSWSMYF+GCK+++S + RKF++ N +E+ + Q +AT V+PL + LAP+A+ N E +A DCR+G +GRPF+GVT C+DFCAH+HKDQHN+ +G T+VCTL K E+ R DEQLHVLPLY++ +
Sbjct: 661 SGFLESPLKYLDTPTKSLLDTPAKRAQA----------EFPTCDCVEQIVEKDEGPYYTHLGSGPTVASIRELMEERYGEKGKAIRIEKVIYTGKEGKSSRGCPIAKWVIRRHTLEEKLLCLVRHRAGHHCQNAVIVILILAWEGIPRSLGDTLYQELTDTLRKYGNPTSRRCGLNDDRTCACQGKDPNTCGASFSFGCSWSMYFNGCKYARSKTPRKFRLAGDNPKEEEVLRKSFQDLATEVAPLYKRLAPQAYQNQVTNEEIAIDCRLGLK-EGRPFAGVTACMDFCAHAHKDQHNLYNGCTVVCTLTK-EDNRCVGKIPEDEQLHVLPLYKMAN 985 HSP 2 Score: 89.7373 bits (221), Expect = 1.145e-17 Identity = 42/78 (53.85%), Postives = 55/78 (70.51%), Query Frame = 1
Query: 1999 DMGGVAIALGHGSFLIECAKKELHATTALQNPSRNQPTRLSMVFYQHKKLNRSQHGYHEYAEKAQQ--KRLRQSHEET 2226
++GGVA+A HGS LIECA++ELHATT L+ P+R PTR+S+VFYQHK LN+ HG + K +Q +R R EE
Sbjct: 1515 NIGGVAVAPAHGSILIECARRELHATTPLKKPNRCHPTRISLVFYQHKNLNQPNHGLALWEAKMKQLAERARARQEEA 1592 The following BLAST results are available for this feature:
BLAST of TCONS_00055033 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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